-
1
-
-
33846951759
-
Biomass recalcitrance: Engineering plants and enzymes for biofuels production
-
Biomass recalcitrance: engineering plants and enzymes for biofuels production. Himmel ME, Ding SY, Johnson DK, Adney WS, Nimlos MR, Brady JW, Foust TD, Science 2007 315 804 807
-
(2007)
Science
, vol.315
, pp. 804-807
-
-
Himmel, M.E.1
Ding, S.Y.2
Johnson, D.K.3
Adney, W.S.4
Nimlos, M.R.5
Brady, J.W.6
Foust, T.D.7
-
2
-
-
27144509197
-
Bio-energy in Europe: Changing technology choices
-
Bio-energy in Europe: changing technology choices. Faaij APC, Energ Policy 2006 34 322 342
-
(2006)
Energ Policy
, vol.34
, pp. 322-342
-
-
Faaij, A.P.C.1
-
3
-
-
79959320676
-
Microbial diversity of cellulose hydrolysis
-
Microbial diversity of cellulose hydrolysis. Wilson DB, Curr Opin Microbiol 2011 14 259 263
-
(2011)
Curr Opin Microbiol
, vol.14
, pp. 259-263
-
-
Wilson, D.B.1
-
4
-
-
0036714783
-
Microbial cellulose utilization: Fundamentals and biotechnology
-
Table of contents
-
Microbial cellulose utilization: fundamentals and biotechnology. Lynd LR, Weimer PJ, van Zyl WH, Pretorius IS, Microbiol Mol Biol Rev 2002 66 506 577 Table of contents
-
(2002)
Microbiol Mol Biol Rev
, vol.66
, pp. 506-577
-
-
Lynd, L.R.1
Weimer, P.J.2
Van Zyl, W.H.3
Pretorius, I.S.4
-
5
-
-
84867521183
-
Architecture and active site of particulate methane monooxygenase
-
Architecture and active site of particulate methane monooxygenase. Culpepper MA, Rosenzweig AC, Crit Rev Biochem Mol Biol 2012 47 483 492
-
(2012)
Crit Rev Biochem Mol Biol
, vol.47
, pp. 483-492
-
-
Culpepper, M.A.1
Rosenzweig, A.C.2
-
6
-
-
84860389363
-
Cleavage of cellulose by a CBM33 protein
-
Cleavage of cellulose by a CBM33 protein. Forsberg Z, Vaaje-Kolstad G, Westereng B, Bunaes AC, Stenstrom Y, MacKenzie A, Sorlie M, Horn SJ, Eijsink VG, Protein Sci 2011 20 1479 1483
-
(2011)
Protein Sci
, vol.20
, pp. 1479-1483
-
-
Forsberg, Z.1
Vaaje-Kolstad, G.2
Westereng, B.3
Bunaes, A.C.4
Stenstrom, Y.5
Mackenzie, A.6
Sorlie, M.7
Horn, S.J.8
Eijsink, V.G.9
-
7
-
-
77950948151
-
Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: Structure and function of a large, enigmatic family
-
Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family. Harris PV, Welner D, McFarland KC, Re E, Navarro Poulsen JC, Brown K, Salbo R, Ding H, Vlasenko E, Merino S, Xu F, Cherry J, Larsen S, Lo Leggio L, Biochemistry 2010 49 3305 3316
-
(2010)
Biochemistry
, vol.49
, pp. 3305-3316
-
-
Harris, P.V.1
Welner, D.2
McFarland, K.C.3
Re, E.4
Navarro Poulsen, J.C.5
Brown, K.6
Salbo, R.7
Ding, H.8
Vlasenko, E.9
Merino, S.10
Xu, F.11
Cherry, J.12
Larsen, S.13
Lo Leggio, L.14
-
8
-
-
84876724822
-
The copper active site of CBM33 polysaccharide oxygenases
-
The copper active site of CBM33 polysaccharide oxygenases. Hemsworth GR, Taylor EJ, Kim RQ, Gregory RC, Lewis SJ, Turkenburg JP, Parkin A, Davies GJ, Walton PH, J Am Chem Soc 2013 135 6069 6077
-
(2013)
J Am Chem Soc
, vol.135
, pp. 6069-6077
-
-
Hemsworth, G.R.1
Taylor, E.J.2
Kim, R.Q.3
Gregory, R.C.4
Lewis, S.J.5
Turkenburg, J.P.6
Parkin, A.7
Davies, G.J.8
Walton, P.H.9
-
9
-
-
0028070108
-
The novel lectin-like protein CHB1 is encoded by a chitin-inducible Streptomyces olivaceoviridis gene and binds specifically to crystalline alpha-chitin of fungi and other organisms
-
The novel lectin-like protein CHB1 is encoded by a chitin-inducible Streptomyces olivaceoviridis gene and binds specifically to crystalline alpha-chitin of fungi and other organisms. Schnellmann J, Zeltins A, Blaak H, Schrempf H, Mol Microbiol 1994 13 807 819
-
(1994)
Mol Microbiol
, vol.13
, pp. 807-819
-
-
Schnellmann, J.1
Zeltins, A.2
Blaak, H.3
Schrempf, H.4
-
10
-
-
0031602025
-
Chitin binding protein (CBP21) in the culture supernatant of Serratia marcescens 2170
-
Chitin binding protein (CBP21) in the culture supernatant of Serratia marcescens 2170. Suzuki K, Suzuki M, Taiyoji M, Nikaidou N, Watanabe T, Biosci Biotechnol Biochem 1998 62 128 135
-
(1998)
Biosci Biotechnol Biochem
, vol.62
, pp. 128-135
-
-
Suzuki, K.1
Suzuki, M.2
Taiyoji, M.3
Nikaidou, N.4
Watanabe, T.5
-
11
-
-
77957727454
-
An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides
-
An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides. Vaaje-Kolstad G, Westereng B, Horn SJ, Liu Z, Zhai H, Sorlie M, Eijsink VG, Science 2010 330 219 222
-
(2010)
Science
, vol.330
, pp. 219-222
-
-
Vaaje-Kolstad, G.1
Westereng, B.2
Horn, S.J.3
Liu, Z.4
Zhai, H.5
Sorlie, M.6
Eijsink, V.G.7
-
12
-
-
84875193804
-
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
-
Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes. Levasseur A, Drula E, Lombard V, Coutinho PM, Henrissat B, Biotechnol Biofuels 2013 6 41
-
(2013)
Biotechnol Biofuels
, vol.6
, pp. 41
-
-
Levasseur, A.1
Drula, E.2
Lombard, V.3
Coutinho, P.M.4
Henrissat, B.5
-
13
-
-
80053088478
-
Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components
-
Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components. Quinlan RJ, Sweeney MD, Lo Leggio L, Otten H, Poulsen JC, Johansen KS, Krogh KB, Jorgensen CI, Tovborg M, Anthonsen A, Tryfona T, Walter CP, Dupree P, Xu F, Davies GJ, Walton PH, Proc Natl Acad Sci U S A 2011 108 15079 15084
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 15079-15084
-
-
Quinlan, R.J.1
Sweeney, M.D.2
Lo Leggio, L.3
Otten, H.4
Poulsen, J.C.5
Johansen, K.S.6
Krogh, K.B.7
Jorgensen, C.I.8
Tovborg, M.9
Anthonsen, A.10
Tryfona, T.11
Walter, C.P.12
Dupree, P.13
Xu, F.14
Davies, G.J.15
Walton, P.H.16
-
14
-
-
81755166559
-
The putative endoglucanase PcGH61D from Phanerochaete chrysosporium is a metal-dependent oxidative enzyme that cleaves cellulose
-
The putative endoglucanase PcGH61D from Phanerochaete chrysosporium is a metal-dependent oxidative enzyme that cleaves cellulose. Westereng B, Ishida T, Vaaje-Kolstad G, Wu M, Eijsink VG, Igarashi K, Samejima M, Stahlberg J, Horn SJ, Sandgren M, PLoS One 2011 6 27807
-
(2011)
PLoS One
, vol.6
, pp. 527807
-
-
Westereng, B.1
Ishida, T.2
Vaaje-Kolstad, G.3
Wu, M.4
Eijsink, V.G.5
Igarashi, K.6
Samejima, M.7
Stahlberg, J.8
Horn, S.J.9
Sandgren, M.10
-
15
-
-
48649104231
-
Regulation and characterization of Thermobifida fusca carbohydrate-binding module proteins E7 and E8
-
Regulation and characterization of Thermobifida fusca carbohydrate-binding module proteins E7 and E8. Moser F, Irwin D, Chen S, Wilson DB, Biotechnol Bioeng 2008 100 1066 1077
-
(2008)
Biotechnol Bioeng
, vol.100
, pp. 1066-1077
-
-
Moser, F.1
Irwin, D.2
Chen, S.3
Wilson, D.B.4
-
16
-
-
84898944979
-
Comparative study of two chitin-active and two cellulose-active AA10-type lytic polysaccharide monooxygenases
-
Comparative study of two chitin-active and two cellulose-active AA10-type lytic polysaccharide monooxygenases. Forsberg Z, Rohr AK, Mekasha S, Andersson KK, Eijsink VG, Vaaje-Kolstad G, Sorlie M, Biochemistry 2014 53 1647 1656
-
(2014)
Biochemistry
, vol.53
, pp. 1647-1656
-
-
Forsberg, Z.1
Rohr, A.K.2
Mekasha, S.3
Andersson, K.K.4
Eijsink, V.G.5
Vaaje-Kolstad, G.6
Sorlie, M.7
-
17
-
-
84869205445
-
NMR structure of a lytic polysaccharide monooxygenase provides insight into copper binding, protein dynamics, and substrate interactions
-
NMR structure of a lytic polysaccharide monooxygenase provides insight into copper binding, protein dynamics, and substrate interactions. Aachmann FL, Sorlie M, Skjak-Braek G, Eijsink VG, Vaaje-Kolstad G, Proc Natl Acad Sci U S A 2012 109 18779 18784
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 18779-18784
-
-
Aachmann, F.L.1
Sorlie, M.2
Skjak-Braek, G.3
Eijsink, V.G.4
Vaaje-Kolstad, G.5
-
18
-
-
84861987031
-
Structural basis for substrate targeting and catalysis by fungal polysaccharide monooxygenases
-
Structural basis for substrate targeting and catalysis by fungal polysaccharide monooxygenases. Li X, Beeson WT, Phillips CM, Marletta MA, Cate JH, Structure 2012 20 1051 1061
-
(2012)
Structure
, vol.20
, pp. 1051-1061
-
-
Li, X.1
Beeson, W.T.2
Phillips, C.M.3
Marletta, M.A.4
Cate, J.H.5
-
19
-
-
84055197660
-
Cellobiose dehydrogenase and a copper-dependent polysaccharide monooxygenase potentiate cellulose degradation by Neurospora crassa
-
Cellobiose dehydrogenase and a copper-dependent polysaccharide monooxygenase potentiate cellulose degradation by Neurospora crassa. Phillips CM, Beeson WT, Cate JH, Marletta MA, ACS Chem Biol 2011 6 1399 1406
-
(2011)
ACS Chem Biol
, vol.6
, pp. 1399-1406
-
-
Phillips, C.M.1
Beeson, W.T.2
Cate, J.H.3
Marletta, M.A.4
-
20
-
-
84891926133
-
Quantum mechanical calculations suggest that lytic polysaccharide monooxygenases use a copper-oxyl, oxygen-rebound mechanism
-
Quantum mechanical calculations suggest that lytic polysaccharide monooxygenases use a copper-oxyl, oxygen-rebound mechanism. Kim S, Stahlberg J, Sandgren M, Paton RS, Beckham GT, Proc Natl Acad Sci U S A 2014 111 149 154
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 149-154
-
-
Kim, S.1
Stahlberg, J.2
Sandgren, M.3
Paton, R.S.4
Beckham, G.T.5
-
21
-
-
84892745213
-
Determinants of regioselective hydroxylation in the fungal polysaccharide monooxygenases
-
Determinants of regioselective hydroxylation in the fungal polysaccharide monooxygenases. Vu VV, Beeson WT, Phillips CM, Cate JHD, Marletta MA, J Am Chem Soc 2014 136 562 565
-
(2014)
J Am Chem Soc
, vol.136
, pp. 562-565
-
-
Vu, V.V.1
Beeson, W.T.2
Phillips, C.M.3
Cate, J.H.D.4
Marletta, M.A.5
-
22
-
-
84893460463
-
A C4-oxidizing lytic polysaccharide monooxygenase cleaving both cellulose and cello-oligosaccharides
-
A C4-oxidizing lytic polysaccharide monooxygenase cleaving both cellulose and cello-oligosaccharides. Isaksen T, Westereng B, Aachmann FL, Agger JW, Kracher D, Kittl R, Ludwig R, Haltrich D, Eijsink VG, Horn SJ, J Biol Chem 2014 289 2632 2642
-
(2014)
J Biol Chem
, vol.289
, pp. 2632-2642
-
-
Isaksen, T.1
Westereng, B.2
Aachmann, F.L.3
Agger, J.W.4
Kracher, D.5
Kittl, R.6
Ludwig, R.7
Haltrich, D.8
Eijsink, V.G.9
Horn, S.J.10
-
23
-
-
84892379836
-
Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay
-
Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay. Hori C, Gaskell J, Igarashi K, Samejima M, Hibbett D, Henrissat B, Cullen D, Mycologia 2013 105 1412 1427
-
(2013)
Mycologia
, vol.105
, pp. 1412-1427
-
-
Hori, C.1
Gaskell, J.2
Igarashi, K.3
Samejima, M.4
Hibbett, D.5
Henrissat, B.6
Cullen, D.7
-
24
-
-
52049106382
-
The first structure of a glycoside hydrolase family 61 member, Cel61B from Hypocrea jecorina, at 1.6 A resolution
-
The first structure of a glycoside hydrolase family 61 member, Cel61B from Hypocrea jecorina, at 1.6 A resolution. Karkehabadi S, Hansson H, Kim S, Piens K, Mitchinson C, Sandgren M, J Mol Biol 2008 383 144 154
-
(2008)
J Mol Biol
, vol.383
, pp. 144-154
-
-
Karkehabadi, S.1
Hansson, H.2
Kim, S.3
Piens, K.4
Mitchinson, C.5
Sandgren, M.6
-
25
-
-
15744367514
-
Crystal structure and binding properties of the Serratia marcescens chitin-binding protein CBP21
-
Crystal structure and binding properties of the Serratia marcescens chitin-binding protein CBP21. Vaaje-Kolstad G, Houston DR, Riemen AH, Eijsink VG, van Aalten DM, J Biol Chem 2005 280 11313 11319
-
(2005)
J Biol Chem
, vol.280
, pp. 11313-11319
-
-
Vaaje-Kolstad, G.1
Houston, D.R.2
Riemen, A.H.3
Eijsink, V.G.4
Van Aalten, D.M.5
-
26
-
-
84857461967
-
The Vibrio cholerae colonization factor GbpA possesses a modular structure that governs binding to different host surfaces
-
The Vibrio cholerae colonization factor GbpA possesses a modular structure that governs binding to different host surfaces. Wong E, Vaaje-Kolstad G, Ghosh A, Hurtado-Guerrero R, Konarev PV, Ibrahim AF, Svergun DI, Eijsink VG, Chatterjee NS, van Aalten DM, PLoS Pathog 2012 8 1002373
-
(2012)
PLoS Pathog
, vol.8
, pp. 51002373
-
-
Wong, E.1
Vaaje-Kolstad, G.2
Ghosh, A.3
Hurtado-Guerrero, R.4
Konarev, P.V.5
Ibrahim, A.F.6
Svergun, D.I.7
Eijsink, V.G.8
Chatterjee, N.S.9
Van Aalten, D.M.10
-
27
-
-
84856500612
-
Characterization of the chitinolytic machinery of Enterococcus faecalis V583 and high-resolution structure of its oxidative CBM33 enzyme
-
Characterization of the chitinolytic machinery of Enterococcus faecalis V583 and high-resolution structure of its oxidative CBM33 enzyme. Vaaje-Kolstad G, Bohle LA, Gaseidnes S, Dalhus B, Bjoras M, Mathiesen G, Eijsink VG, J Mol Biol 2012 416 239 254
-
(2012)
J Mol Biol
, vol.416
, pp. 239-254
-
-
Vaaje-Kolstad, G.1
Bohle, L.A.2
Gaseidnes, S.3
Dalhus, B.4
Bjoras, M.5
Mathiesen, G.6
Eijsink, V.G.7
-
28
-
-
84877151161
-
Crystal structure and computational characterization of the lytic polysaccharide monooxygenase GH61D from the Basidiomycota fungus Phanerochaete chrysosporium
-
Crystal structure and computational characterization of the lytic polysaccharide monooxygenase GH61D from the Basidiomycota fungus Phanerochaete chrysosporium. Wu M, Beckham GT, Larsson AM, Ishida T, Kim S, Payne CM, Himmel ME, Crowley MF, Horn SJ, Westereng B, Igarashi K, Samejima M, Ståhlberg J, Eijsink VG, Sandgren M, J Biol Chem 2013 288 12828 12839
-
(2013)
J Biol Chem
, vol.288
, pp. 12828-12839
-
-
Wu, M.1
Beckham, G.T.2
Larsson, A.M.3
Ishida, T.4
Kim, S.5
Payne, C.M.6
Himmel, M.E.7
Crowley, M.F.8
Horn, S.J.9
Westereng, B.10
Igarashi, K.11
Samejima, M.12
Ståhlberg, J.13
Eijsink, V.G.14
Sandgren, M.15
-
29
-
-
33749394275
-
Understanding the biological rationale for the diversity of cellulose-directed carbohydrate-binding modules in prokaryotic enzymes
-
Understanding the biological rationale for the diversity of cellulose-directed carbohydrate-binding modules in prokaryotic enzymes. Blake AW, McCartney L, Flint JE, Bolam DN, Boraston AB, Gilbert HJ, Knox JP, J Biol Chem 2006 281 29321 29329
-
(2006)
J Biol Chem
, vol.281
, pp. 29321-29329
-
-
Blake, A.W.1
McCartney, L.2
Flint, J.E.3
Bolam, D.N.4
Boraston, A.B.5
Gilbert, H.J.6
Knox, J.P.7
-
30
-
-
0037799892
-
The modular architecture of Cellvibrio japonicus mannanases in glycoside hydrolase families 5 and 26 points to differences in their role in mannan degradation
-
The modular architecture of Cellvibrio japonicus mannanases in glycoside hydrolase families 5 and 26 points to differences in their role in mannan degradation. Hogg D, Pell G, Dupree P, Goubet F, Martin-Orue SM, Armand S, Gilbert HJ, Biochem J 2003 371 1027 1043
-
(2003)
Biochem J
, vol.371
, pp. 1027-1043
-
-
Hogg, D.1
Pell, G.2
Dupree, P.3
Goubet, F.4
Martin-Orue, S.M.5
Armand, S.6
Gilbert, H.J.7
-
31
-
-
39049188138
-
Gene cloning and characterization of a novel alpha-amylase from alkaliphilic Alkalimonas amylolytica
-
Gene cloning and characterization of a novel alpha-amylase from alkaliphilic Alkalimonas amylolytica. Wang N, Zhang Y, Wang Q, Liu J, Wang H, Xue Y, Ma Y, Biotechnol J 2006 1 1258 1265
-
(2006)
Biotechnol J
, vol.1
, pp. 1258-1265
-
-
Wang, N.1
Zhang, Y.2
Wang, Q.3
Liu, J.4
Wang, H.5
Xue, Y.6
Ma, Y.7
-
32
-
-
0024075419
-
Identification of a celE-binding protein and its potential role in induction of the celE gene in Thermomonospora fusca
-
Identification of a celE-binding protein and its potential role in induction of the celE gene in Thermomonospora fusca. Lin ES, Wilson DB, J Bacteriol 1988 170 3843 3846
-
(1988)
J Bacteriol
, vol.170
, pp. 3843-3846
-
-
Lin, E.S.1
Wilson, D.B.2
-
33
-
-
0028920918
-
Characterization of a Thermomonospora fusca exocellulase
-
Characterization of a Thermomonospora fusca exocellulase. Zhang S, Lao G, Wilson DB, Biochemistry 1995 34 3386 3395
-
(1995)
Biochemistry
, vol.34
, pp. 3386-3395
-
-
Zhang, S.1
Lao, G.2
Wilson, D.B.3
-
34
-
-
84857685961
-
Isolation of genes coding for chitin-degrading enzymes in the novel chitinolytic bacterium, Chitiniphilus shinanonensis, and characterization of a gene coding for a family 19 chitinase
-
Isolation of genes coding for chitin-degrading enzymes in the novel chitinolytic bacterium, Chitiniphilus shinanonensis, and characterization of a gene coding for a family 19 chitinase. Huang L, Garbulewska E, Sato K, Kato Y, Nogawa M, Taguchi G, Shimosaka M, J Biosci Bioeng 2012 113 293 299
-
(2012)
J Biosci Bioeng
, vol.113
, pp. 293-299
-
-
Huang, L.1
Garbulewska, E.2
Sato, K.3
Kato, Y.4
Nogawa, M.5
Taguchi, G.6
Shimosaka, M.7
-
35
-
-
84860109324
-
MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space
-
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Hohna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP, Syst Biol 2012 61 539 542
-
(2012)
Syst Biol
, vol.61
, pp. 539-542
-
-
Ronquist, F.1
Teslenko, M.2
Van Der Mark, P.3
Ayres, D.L.4
Darling, A.5
Hohna, S.6
Larget, B.7
Liu, L.8
Suchard, M.A.9
Huelsenbeck, J.P.10
-
36
-
-
84871874790
-
Cello-oligosaccharide oxidation reveals differences between two lytic polysaccharide monooxygenases (family GH61) from Podospora anserina
-
Cello-oligosaccharide oxidation reveals differences between two lytic polysaccharide monooxygenases (family GH61) from Podospora anserina. Bey M, Zhou S, Poidevin L, Henrissat B, Coutinho PM, Berrin JG, Sigoillot JC, Appl Environ Microbiol 2013 79 488 496
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 488-496
-
-
Bey, M.1
Zhou, S.2
Poidevin, L.3
Henrissat, B.4
Coutinho, P.M.5
Berrin, J.G.6
Sigoillot, J.C.7
-
37
-
-
84867753151
-
Production of four Neurospora crassa lytic polysaccharide monooxygenases in Pichia pastoris monitored by a fluorimetric assay
-
Production of four Neurospora crassa lytic polysaccharide monooxygenases in Pichia pastoris monitored by a fluorimetric assay. Kittl R, Kracher D, Burgstaller D, Haltrich D, Ludwig R, Biotechnol Biofuels 2012 5 79
-
(2012)
Biotechnol Biofuels
, vol.5
, pp. 79
-
-
Kittl, R.1
Kracher, D.2
Burgstaller, D.3
Haltrich, D.4
Ludwig, R.5
-
38
-
-
81755178934
-
Oxidoreductive cellulose depolymerization by the enzymes cellobiose dehydrogenase and glycoside hydrolase 61
-
Oxidoreductive cellulose depolymerization by the enzymes cellobiose dehydrogenase and glycoside hydrolase 61. Langston JA, Shaghasi T, Abbate E, Xu F, Vlasenko E, Sweeney MD, Appl Environ Microbiol 2011 77 7007 7015
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7007-7015
-
-
Langston, J.A.1
Shaghasi, T.2
Abbate, E.3
Xu, F.4
Vlasenko, E.5
Sweeney, M.D.6
-
39
-
-
84855912007
-
Oxidative cleavage of cellulose by fungal copper-dependent polysaccharide monooxygenases
-
Oxidative cleavage of cellulose by fungal copper-dependent polysaccharide monooxygenases. Beeson WT, Phillips CM, Cate JH, Marletta MA, J Am Chem Soc 2012 134 890 892
-
(2012)
J Am Chem Soc
, vol.134
, pp. 890-892
-
-
Beeson, W.T.1
Phillips, C.M.2
Cate, J.H.3
Marletta, M.A.4
-
40
-
-
84872706898
-
Aerobic deconstruction of cellulosic biomass by an insect-associated Streptomyces
-
Aerobic deconstruction of cellulosic biomass by an insect-associated Streptomyces. Takasuka TE, Book AJ, Lewin GR, Currie CR, Fox BG, Sci Rep 2013 3 1030
-
(2013)
Sci Rep
, vol.3
, pp. 1030
-
-
Takasuka, T.E.1
Book, A.J.2
Lewin, G.R.3
Currie, C.R.4
Fox, B.G.5
-
41
-
-
77954065271
-
I-TASSER: A unified platform for automated protein structure and function prediction
-
I-TASSER: a unified platform for automated protein structure and function prediction. Roy A, Kucukural A, Zhang Y, Nat Protoc 2010 5 725 738
-
(2010)
Nat Protoc
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
42
-
-
33747823564
-
MEME: Discovering and analyzing DNA and protein sequence motifs
-
MEME: discovering and analyzing DNA and protein sequence motifs. Bailey TL, Williams N, Misleh C, Li WW, Nucleic Acids Res 2006 34 369 W373
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 23369-W373
-
-
Bailey, T.L.1
Williams, N.2
Misleh, C.3
Li, W.W.4
-
43
-
-
0036720020
-
The Ka/Ks ratio: Diagnosing the form of sequence evolution
-
The Ka/Ks ratio: diagnosing the form of sequence evolution. Hurst LD, Trends Genet 2002 18 486
-
(2002)
Trends Genet
, vol.18
, pp. 486
-
-
Hurst, L.D.1
-
44
-
-
84880055388
-
Fusion of dioxygenase and lignin-binding domains in a novel secreted enzyme from cellulolytic streptomyces sp SirexAA-E
-
Fusion of dioxygenase and lignin-binding domains in a novel secreted enzyme from cellulolytic streptomyces sp SirexAA-E. Bianchetti CM, Harmann CH, Takasuka TE, Hura GL, Dyer K, Fox BG, J Biol Chem 2013 288 18574 18587
-
(2013)
J Biol Chem
, vol.288
, pp. 18574-18587
-
-
Bianchetti, C.M.1
Harmann, C.H.2
Takasuka, T.E.3
Hura, G.L.4
Dyer, K.5
Fox, B.G.6
-
45
-
-
58149200943
-
The carbohydrate-active EnZymes database (CAZy): An expert resource for glycogenomics
-
The carbohydrate-active EnZymes database (CAZy): an expert resource for glycogenomics. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B, Nucleic Acids Res 2009 37 233 D238
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 4233-D238
-
-
Cantarel, B.L.1
Coutinho, P.M.2
Rancurel, C.3
Bernard, T.4
Lombard, V.5
Henrissat, B.6
-
46
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ, Nucleic Acids Res 1997 25 3389 3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
47
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Cytoscape: a software environment for integrated models of biomolecular interaction networks. Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T, Genome Res 2003 13 2498 2504
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
48
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Edgar RC, Nucleic Acids Res 2004 32 1792 1797
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
49
-
-
84855824416
-
Accounting for alignment uncertainty in phylogenomics
-
Accounting for alignment uncertainty in phylogenomics. Wu M, Chatterji S, Eisen JA, PLoS One 2012 7 30288
-
(2012)
PLoS One
, vol.7
, pp. 530288
-
-
Wu, M.1
Chatterji, S.2
Eisen, J.A.3
-
50
-
-
84899553363
-
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies
-
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Stamatakis A, Bioinformatics 2014 30 1312 1313
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
51
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
PAML: a program package for phylogenetic analysis by maximum likelihood. Yang Z, Comput Appl Biosci 1997 13 555 556
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
52
-
-
0030749810
-
Bayesian phylogenetic inference using DNA sequences: A Markov Chain Monte Carlo Method
-
Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method. Yang Z, Rannala B, Mol Biol Evol 1997 14 717 724
-
(1997)
Mol Biol Evol
, vol.14
, pp. 717-724
-
-
Yang, Z.1
Rannala, B.2
-
53
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Dali server: conservation mapping in 3D. Holm L, Rosenstrom P, Nucleic Acids Res 2010 38 545 W549
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 23545-W549
-
-
Holm, L.1
Rosenstrom, P.2
-
54
-
-
84908094391
-
-
The Model Archive. http://www.modelarchive.org/doi/10.5452/ma-asp8e
-
The Model Archive
-
-
-
55
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Shindyalov IN, Bourne PE, Protein Eng 1998 11 739 747
-
(1998)
Protein Eng
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
56
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
Electrostatics of nanosystems: application to microtubules and the ribosome. Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA, Proc Natl Acad Sci U S A 2001 98 10037 10041
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
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