-
1
-
-
84455173447
-
Genomics of bacterial and archaeal viruses: Dynamics within the prokaryotic virosphere
-
Krupovic M, Prangishvili D, Hendrix RW, Bamford DH (2011) Genomics of bacterial and archaeal viruses: Dynamics within the prokaryotic virosphere. Microbiol Mol Biol Rev 75(4):610-635.
-
(2011)
Microbiol Mol Biol Rev
, vol.75
, Issue.4
, pp. 610-635
-
-
Krupovic, M.1
Prangishvili, D.2
Hendrix, R.W.3
Bamford, D.H.4
-
2
-
-
48749086251
-
Comparative genomics and evolutionary trajectories of viral ATP dependent DNA-packaging systems
-
Burroughs AM, Iyer LM, Aravind L (2007) Comparative genomics and evolutionary trajectories of viral ATP dependent DNA-packaging systems. Genome Dyn 3:48-65.
-
(2007)
Genome Dyn
, vol.3
, pp. 48-65
-
-
Burroughs, A.M.1
Iyer, L.M.2
Aravind, L.3
-
3
-
-
84863275912
-
Single-molecule studies of viral DNA packaging
-
Viral Molecular Machines. eds Rossmann MG, Rao VB (Springer, New York)
-
Chemla Y, Smith D (2012) Single-molecule studies of viral DNA packaging. Viral Molecular Machines. Advances in Experimental Medicine and Biology, eds Rossmann MG, Rao VB (Springer, New York), Vol 726, pp 549-584.
-
(2012)
Advances in Experimental Medicine and Biology
, vol.726
, pp. 549-584
-
-
Chemla, Y.1
Smith, D.2
-
4
-
-
49249093920
-
Structural frameworks for considering microbial protein- and nucleic acid-dependent motor ATPases
-
Thomsen ND, Berger JM (2008) Structural frameworks for considering microbial protein- and nucleic acid-dependent motor ATPases. Mol Microbiol 69(5):1071-1090.
-
(2008)
Mol Microbiol
, vol.69
, Issue.5
, pp. 1071-1090
-
-
Thomsen, N.D.1
Berger, J.M.2
-
5
-
-
0034619668
-
Structure of the bacteriophage phi29 DNA packaging motor
-
Simpson AA, et al. (2000) Structure of the bacteriophage phi29 DNA packaging motor. Nature 408(6813):745-750.
-
(2000)
Nature
, vol.408
, Issue.6813
, pp. 745-750
-
-
Simpson, A.A.1
-
7
-
-
57649226492
-
The bacteriophage DNA packaging motor
-
Rao VB, Feiss M (2008) The bacteriophage DNA packaging motor. Annu Rev Genet 42(1):647-681.
-
(2008)
Annu Rev Genet
, vol.42
, Issue.1
, pp. 647-681
-
-
Rao, V.B.1
Feiss, M.2
-
8
-
-
0029129145
-
Virus DNA packaging: The strategy used by phage λ
-
Catalano CE, Cue D, Feiss M (1995) Virus DNA packaging: The strategy used by phage λ. Mol Microbiol 16(6):1075-1086.
-
(1995)
Mol Microbiol
, vol.16
, Issue.6
, pp. 1075-1086
-
-
Catalano, C.E.1
Cue, D.2
Feiss, M.3
-
10
-
-
0037106323
-
Sequence analysis of bacteriophage T4 DNA packaging/terminase genes 16 and 17 reveals a common ATPase center in the large subunit of viral terminases
-
Mitchell MS, Matsuzaki S, Imai S, Rao VB (2002) Sequence analysis of bacteriophage T4 DNA packaging/terminase genes 16 and 17 reveals a common ATPase center in the large subunit of viral terminases. Nucleic Acids Res 30(18):4009-4021.
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.18
, pp. 4009-4021
-
-
Mitchell, M.S.1
Matsuzaki, S.2
Imai, S.3
Rao, V.B.4
-
11
-
-
84908063758
-
Molecular architecture of tailed double-stranded DNA phages
-
Fokine A, Rossmann MG (2014) Molecular architecture of tailed double-stranded DNA phages. Bacteriophage 4(1):e28281.
-
(2014)
Bacteriophage
, vol.4
, Issue.1
, pp. e28281
-
-
Fokine, A.1
Rossmann, M.G.2
-
12
-
-
57649228017
-
The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces
-
Sun S, et al. (2008) The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces. Cell 135(7):1251-1262.
-
(2008)
Cell
, vol.135
, Issue.7
, pp. 1251-1262
-
-
Sun, S.1
-
13
-
-
36749028241
-
Single phage T4 DNA packaging motors exhibit large force generation, high velocity, and dynamic variability
-
Fuller DN, Raymer DM, Kottadiel VI, Rao VB, Smith DE (2007) Single phage T4 DNA packaging motors exhibit large force generation, high velocity, and dynamic variability. Proc Natl Acad Sci USA 104(43):16868-16873.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.43
, pp. 16868-16873
-
-
Fuller, D.N.1
Raymer, D.M.2
Kottadiel, V.I.3
Rao, V.B.4
Smith, D.E.5
-
14
-
-
0023933829
-
Cloning, overexpression and purification of the terminase proteins gp16 and gp17 of bacteriophage T4. Construction of a defined in-vitro DNA packaging system using purified terminase proteins
-
Rao VB, Black LW (1988) Cloning, overexpression and purification of the terminase proteins gp16 and gp17 of bacteriophage T4. Construction of a defined in-vitro DNA packaging system using purified terminase proteins. J Mol Biol 200(3):475-488.
-
(1988)
J Mol Biol
, vol.200
, Issue.3
, pp. 475-488
-
-
Rao, V.B.1
Black, L.W.2
-
15
-
-
0034711268
-
Biochemical characterization of an ATPase activity associated with the large packaging subunit gp17 from bacteriophage T4
-
Leffers G, Rao VB (2000) Biochemical characterization of an ATPase activity associated with the large packaging subunit gp17 from bacteriophage T4. J Biol Chem 275(47):37127-37136.
-
(2000)
J Biol Chem
, vol.275
, Issue.47
, pp. 37127-37136
-
-
Leffers, G.1
Rao, V.B.2
-
16
-
-
84856402988
-
Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages
-
Sun S, et al. (2012) Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages. Proc Natl Acad Sci USA 109(3):817-822.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.3
, pp. 817-822
-
-
Sun, S.1
-
17
-
-
84876815569
-
Function and horizontal transfer of the small terminase subunit of the tailed bacteriophage Sf6 DNA packaging nanomotor
-
Leavitt JC, Gilcrease EB, Wilson K, Casjens SR (2013) Function and horizontal transfer of the small terminase subunit of the tailed bacteriophage Sf6 DNA packaging nanomotor. Virology 440(2):117-133.
-
(2013)
Virology
, vol.440
, Issue.2
, pp. 117-133
-
-
Leavitt, J.C.1
Gilcrease, E.B.2
Wilson, K.3
Casjens, S.R.4
-
18
-
-
1942436909
-
Initial cos cleavage of bacteriophage lambda concatemers requires proheads and gpFI in vivo
-
Sippy J, Feiss M (2004) Initial cos cleavage of bacteriophage lambda concatemers requires proheads and gpFI in vivo. Mol Microbiol 52(2):501-513.
-
(2004)
Mol Microbiol
, vol.52
, Issue.2
, pp. 501-513
-
-
Sippy, J.1
Feiss, M.2
-
19
-
-
84877853462
-
Structures of the phage Sf6 large terminase provide new insights into DNA translocation and cleavage
-
Zhao H, Christensen TE, Kamau YN, Tang L (2013) Structures of the phage Sf6 large terminase provide new insights into DNA translocation and cleavage. Proc Natl Acad Sci USA 110(20):8075-8080.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.20
, pp. 8075-8080
-
-
Zhao, H.1
Christensen, T.E.2
Kamau, Y.N.3
Tang, L.4
-
20
-
-
33846551354
-
Counting of six pRNAs of phi29 DNA-packaging motor with customized single-molecule dual-view system
-
Shu D, Zhang H, Jin J, Guo P (2007) Counting of six pRNAs of phi29 DNA-packaging motor with customized single-molecule dual-view system. EMBO J 26(2):527-537.
-
(2007)
EMBO J
, vol.26
, Issue.2
, pp. 527-537
-
-
Shu, D.1
Zhang, H.2
Jin, J.3
Guo, P.4
-
21
-
-
75849131151
-
DNA crunching by a viral packaging motor: Compression of a procapsid-portal stalled Y-DNA substrate
-
Ray K, Sabanayagam CR, Lakowicz JR, Black LW (2010) DNA crunching by a viral packaging motor: Compression of a procapsid-portal stalled Y-DNA substrate. Virology 398(2):224-232.
-
(2010)
Virology
, vol.398
, Issue.2
, pp. 224-232
-
-
Ray, K.1
Sabanayagam, C.R.2
Lakowicz, J.R.3
Black, L.W.4
-
22
-
-
33645828216
-
Single-particle light microscopy of bacteriophages
-
Serwer P, Wang H (2005) Single-particle light microscopy of bacteriophages. J Nanosci Nanotechnol 5(12):2014-2028.
-
(2005)
J Nanosci Nanotechnol
, vol.5
, Issue.12
, pp. 2014-2028
-
-
Serwer, P.1
Wang, H.2
-
23
-
-
44449134820
-
A practical guide to single-molecule FRET
-
Roy R, Hohng S, Ha T (2008) A practical guide to single-molecule FRET. Nat Methods 5(6):507-516.
-
(2008)
Nat Methods
, vol.5
, Issue.6
, pp. 507-516
-
-
Roy, R.1
Hohng, S.2
Ha, T.3
-
24
-
-
84861350662
-
Portal-large terminase interactions of the bacteriophage T4 DNA packaging machine implicate a molecular lever mechanism for coupling ATPase to DNA translocation
-
Hegde S, Padilla-Sanchez V, Draper B, Rao VB (2012) Portal-large terminase interactions of the bacteriophage T4 DNA packaging machine implicate a molecular lever mechanism for coupling ATPase to DNA translocation. J Virol 86(8):4046-4057.
-
(2012)
J Virol
, vol.86
, Issue.8
, pp. 4046-4057
-
-
Hegde, S.1
Padilla-Sanchez, V.2
Draper, B.3
Rao, V.B.4
-
25
-
-
53549123557
-
Packaging of a unit-length viral genome: The role of nucleotides and the gpD decoration protein in stable nucleocapsid assembly in bacteriophage lambda
-
Yang Q, Maluf NK, Catalano CE (2008) Packaging of a unit-length viral genome: the role of nucleotides and the gpD decoration protein in stable nucleocapsid assembly in bacteriophage lambda. J Mol Biol 383(5):1037-1048.
-
(2008)
J Mol Biol
, vol.383
, Issue.5
, pp. 1037-1048
-
-
Yang, Q.1
Maluf, N.K.2
Catalano, C.E.3
-
26
-
-
0028960132
-
Structural and functional domains of the large subunit of the bacteriophage T3 DNA packaging enzyme: Importance of the C-terminal region in prohead binding
-
Morita M, Tasaka M, Fujisawa H (1995) Structural and functional domains of the large subunit of the bacteriophage T3 DNA packaging enzyme: Importance of the C-terminal region in prohead binding. J Mol Biol 245(5):635-644.
-
(1995)
J Mol Biol
, vol.245
, Issue.5
, pp. 635-644
-
-
Morita, M.1
Tasaka, M.2
Fujisawa, H.3
-
27
-
-
84861908388
-
One influenza virus particle packages eight unique viral RNAs as shown by FISH analysis
-
Chou YY, et al. (2012) One influenza virus particle packages eight unique viral RNAs as shown by FISH analysis. Proc Natl Acad Sci USA 109(23):9101-9106.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.23
, pp. 9101-9106
-
-
Chou, Y.Y.1
-
28
-
-
0035976782
-
The N-terminal ATPase site in the large terminase protein gp17 is critically required for DNA packaging in bacteriophage T4
-
Rao VB, Mitchell MS (2001) The N-terminal ATPase site in the large terminase protein gp17 is critically required for DNA packaging in bacteriophage T4. J Mol Biol 314(3):401-411.
-
(2001)
J Mol Biol
, vol.314
, Issue.3
, pp. 401-411
-
-
Rao, V.B.1
Mitchell, M.S.2
-
29
-
-
58749087869
-
Intersubunit coordination in a homomeric ring ATPase
-
Moffitt JR, et al. (2009) Intersubunit coordination in a homomeric ring ATPase. Nature 457(7228):446-450.
-
(2009)
Nature
, vol.457
, Issue.7228
, pp. 446-450
-
-
Moffitt, J.R.1
-
30
-
-
84899563168
-
A viral packaging motor varies its DNA rotation and step size to preserve subunit coordination as the capsid fills
-
Liu S, et al. (2014) A viral packaging motor varies its DNA rotation and step size to preserve subunit coordination as the capsid fills. Cell 157(3):702-713.
-
(2014)
Cell
, vol.157
, Issue.3
, pp. 702-713
-
-
Liu, S.1
-
31
-
-
0037335488
-
Bacteriophage T4 genome
-
Miller ES, et al. (2003) Bacteriophage T4 genome. Microbiol Mol Biol Rev 67(1):86-156.
-
(2003)
Microbiol Mol Biol Rev
, vol.67
, Issue.1
, pp. 86-156
-
-
Miller, E.S.1
-
32
-
-
84870885884
-
Compression of the DNA substrate by a viral packaging motor is supported by removal of intercalating dye during translocation
-
Dixit AB, Ray K, Black LW (2012) Compression of the DNA substrate by a viral packaging motor is supported by removal of intercalating dye during translocation. Proc Natl Acad Sci USA 109(50):20419-20424.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.50
, pp. 20419-20424
-
-
Dixit, A.B.1
Ray, K.2
Black, L.W.3
-
33
-
-
84870589316
-
The dynamic pause-unpackaging state, an off-translocation recovery state of a DNA packaging motor from bacteriophage T4
-
Kottadiel VI, Rao VB, Chemla YR (2012) The dynamic pause-unpackaging state, an off-translocation recovery state of a DNA packaging motor from bacteriophage T4. Proc Natl Acad Sci USA 109(49):20000-20005.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.49
, pp. 20000-20005
-
-
Kottadiel, V.I.1
Rao, V.B.2
Chemla, Y.R.3
-
34
-
-
79952264222
-
A promiscuous DNA packaging machine from bacteriophage T4
-
Zhang Z, et al. (2011) A promiscuous DNA packaging machine from bacteriophage T4. PLoS Biol 9(2):e1000592.
-
(2011)
PLoS Biol
, vol.9
, Issue.2
, pp. e1000592
-
-
Zhang, Z.1
-
35
-
-
4544321685
-
Phages and the evolution of bacterial pathogens: From genomic rearrangements to lysogenic conversion
-
Brüssow H, Canchaya C, Hardt W-D (2004) Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol Mol Biol Rev 68(3):560-602.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, Issue.3
, pp. 560-602
-
-
Brüssow, H.1
Canchaya, C.2
Hardt, W.-D.3
|