Interactions among soil, plants, and microorganisms drive secondary succession in a dry environment

Soil Biology and Biochemistry

Volumn 78, Issue , 2014, Pages 298-306

  Lozano, Yudi M ^a   Hortal, Sara ^a,b   Armas, Cristina ^a,c,d   Pugnaire, Francisco I ^a  

^a DEPARTAMENTO DE ECOLOGÍA FUNCIONAL Y EVOLUTIVA   (Spain)

^b WESTERN SYDNEY UNIVERSITY   (Australia)

^c INSTITUTO DE ECOLOGÍA Y BIODIVERSIDAD IEB   (Chile)

^d DEPARTAMENTO DE BIOLOGÍA   (Chile)

Author keywords

Chronosequence; Community structure; Microbial activity; Plant soil interactions; Pyrosequencing; Soil bacterial communities; Soil microbial biomass; Soil nutrients

Indexed keywords

CHRONOSEQUENCES; COMMUNITY STRUCTURES; MICROBIAL ACTIVITIES; PLANT-SOIL INTERACTIONS; PYROSEQUENCING; SOIL BACTERIAL COMMUNITY; SOIL MICROBIAL BIOMASS; SOIL NUTRIENTS;

ARABLE LAND; CHRONOSEQUENCE; ECOSYSTEM FUNCTION; ENZYME ACTIVITY; MICROBIAL COMMUNITY; PLANT COMMUNITY; SECONDARY SUCCESSION; SOIL MICROORGANISM; SOIL NUTRIENT; SOIL PROPERTY;

BACTERIA (MICROORGANISMS);

EID: 84908030319     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2014.08.007     Document Type: Article

References (62)

1. Abella S. Disturbance and plant succession in the Mojave and Sonoran deserts of the American southwest. International Journal of Environmental Research and Public Health 2010, 7:1248-1284.
2. Acosta-Martínez V., Dowd S.E., Sun Y., Wester D., Allen V. Pyrosequencing analysis for characterization of soil bacterial populations as affected by an integrated livestock-cotton production system. Applied Soil Ecology 2010, 45:13-25.
3. Austin A., Piñeiro G., Gonzalez Polo M. More is less: agricultural impacts on the N cycle in Argentina. Biogeochemistry 2006, 79:45-60.
4. Austin A., Sala O.E., Jackson R.B. Inhibition of nitrification alters carbon turnover in the Patagonian steppe. Ecosystems 2006, 9:1257-1265.
5. Banning N.C., Gleeson D.B., Grigg A.H., Grant C.D., Andersen G.L., Brodie E.L., Murphy D.V. Soil microbial community successional patterns during forest ecosystem restoration. Applied and Environmental Microbiology 2011, 77:6158-6164.
6. Bever J.D. Soil community feedback and the coexistence of competitors: conceptual frameworks and empirical tests. New phytologist 2003, 157:465-473.
7. Bonet A. Secondary succession of semi-arid Mediterranean old-fields in south-eastern Spain: insights for conservation and restoration of degraded lands. Journal of Arid Environments 2004, 56:213-233.
8. Bontemps C., Toussaint M., Revol P.-V., Hotel L., Jeanbille M., Uroz S., Turpault M.-P., Blaudez D., Leblond P. Taxonomic and functional diversity of Streptomyces in a forest soil. FEMS Microbiology Letters 2013, 342:157-167.
9. Boudsocq S., Niboyet A., Lata J.C., Raynaud X., Loeuille N., Mathieu J., Blouin M., Abbadie L., Barot S. Plant preference for ammonium versus nitrate: a neglected determinant of ecosystem functioning?. American Naturalist 2012, 180:60-69.
10. Bragg L., Stone G., Imelfort M., Hugenholtz P., Tyson G.W. Fast, accurate error-correction of amplicon pyrosequences using Acacia. Nature Methods 2012, 9:425-426.
11. Carrick P., Krüger R. Restoring degraded landscapes in lowland Namaqualand: lessons from the mining experience and from regional ecological dynamics. Journal of Arid Environments 2007, 70:767-781.
12. Conant R.T., Dalla-Betta P., Klopatek C.C., Klopatek J.A. Controls on soil respiration in semiarid soils. Soil Biology & Biochemistry 2004, 36:945-951.
13. Cramer V.A., Hobbs R.J. Old Fields: Dynamics and Restoration of Abandoned Farmland 2007, Island Press, Washington.
14. Chancellor W., Schafer R., Gill W., Wismer R., Bowen H., Garner T., Vaughan D. Advances in Soil Dynamics 1994, American Society of Agricultural Engineers, St Joseph.
15. Dana E.D., Mota J.F. Vegetation and soil recovery on gypsum outcrops in semi-arid Spain. Journal of Arid Environments 2006, 65:444-459.
16. Di Rienzo J.A., Casanoves F., Balzarini M.G., Gonzalez L., Tablada M., Robledo C.W. InfoStat, Versión 2013 2013, http://www.infostat.com.ar.
17. Duchaufour P. Pedology: Soil, Vegetation and Environment 1995, Masson, Paris. fourth ed.
18. Dungait J.A.J., Kemmitt S.J., Michallon L., Guo S., Wen Q. Variable responses of the soil microbial biomass to trace concentrations of 13C-labelled glucose, using 13C-PLFA analysis. European Journal of Soil Science 2011, 62:117-126.
19. Fierer N., Bradford M.A., Jackson R.B. Toward an ecological classification of soil bacteria. Ecology 2007, 88:1354-1364.
20. Foster B.L., Tilman D. Dynamic and static views of succession: testing the descriptive power of the chronosequence approach. Plant Ecology 2000, 146:1-10.
21. Girvan M., Bullimore J., Pretty J., Osborn A.M., Ball A. Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Applied and Environmental Microbiology 2003, 69:1800-1809.
22. Hammer Ø., Harper D.A.T., Ryan P.D. PAST: paleontological statistics software package for education and data analysis. Palaeontologia Electronica 2001, 4(9). http://palaeo-electronica.org/2001_1/past/issue1_01.htm.
23. Hortal S., Bastida F., Armas C., Lozano Y.M., Moreno J.L., García C., Pugnaire F.I. Soil microbial community under a nurse-plant species changes in composition, biomass and activity as the nurse grows. Soil Biology & Biochemistry 2013, 64:139-146.
24. Jangid K., Williams M.A., Franzluebbers A.J., Schmidt T.M., Coleman D.C., Whitman W.B. Land-use history has a stronger impact on soil microbial community composition than aboveground vegetation and soil properties. Soil Biology & Biochemistry 2011, 43:2184-2193.
25. Jiang H., Huang Q., Deng S., Dong H., Yu B. Planktonic actinobacterial diversity along a salinity gradient of a river and five lakes on the Tibetan Plateau. Extremophiles 2010, 14:367-376.
26. Kandeler E., Gerber H. Short-term assay of soil urease activity using colorimetric determination of ammonium. Biology and Fertility of Soils 1988, 6:68-72.
27. Kardol P., De Deyn G.B., Laliberte E., Mariotte P., Hawkes C.V. Biotic plant-soil feedbacks across temporal scales. Journal of Ecology 2013, 101:309-315.
28. Kersters K., De Vos P., Gillis M., Swings J., Vandamme P., Stackebrandt E. Introduction to the Proteobacteria. The Prokaryotes: a Handbook on the Biology of Bacteria 2006, 3-37. Springer, New York. M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer, E. Stackebrandt (Eds.).
29. Klironomos J. FeedMack with soil biota contributes to plant rarity and invasiveness in communities. Nature 2002, 417:67-70.
30. Köberl M., Ramadan E.M., Adam M., Cardinale M., Hallmann J., Heuer H., Smalla K., Berg G. Bacillus and streptomyces were selected as broad-spectrum antagonists against soilborne pathogens from arid areas in Egypt. FEMS Microbiology Letters 2013, 342:168-178.
31. Kowalchuk G.A., Buma D., de Boer W., Klinkhamer P.L., van Veen J. Effectsof above-ground plant species composition and diversity on the diversity of soil-borne microorganisms. Antonie van Leeuwenhoek 2002, 81:509-520.
32. Kuramae E., Gamper H., Van Veen J., Kowalchuk G. Soil and plant factors driving the community of soil-borne microorganisms across chronosequences of secondary succession of chalk grasslands with a neutral pH. FEMS Microbiology Ecology 2011, 77:285-294.
33. Lázaro R., Rodrigo F.S., Gutierrez L., Domingo F., Puigdefabregas J. Analysis of a 30-year rainfall record (1967-1997) in semi-arid SE Spain for implications on vegetation. Journal of Arid Environments 2001, 48:373-395.
34. Lucas-Borja M.E., Wic-Baena C., Moreno J.L., Dadi T., García C. Microbial activity in soils under fast-growing Paulownia (Paulownia elongata x fortunei) plantations in Mediterranean areas. Applied Soil Ecology 2011, 51:42-51.
35. Martínez-García L.B., Armas C., Miranda J.d.D., Padilla F.M., Pugnaire F.I. Shrubs influence arbuscular mycorrhizal fungi communities in a semi-arid environment. Soil Biology & Biochemistry 2011, 43:682-689.
36. McLendon T., Redente E.F. Effects of nitrogen limitation on species replacement dynamics during early secondary succession on a semiarid sagebrush site. Oecologia 1992, 91:312-317.
37. Mitchell A. The ESRI Guide to GIS Analysis: Geographic Patterns and Relationships 1999, ESRI Press, California.
38. Mitchell R.J., Hester A.J., Campbell C.D., Chapman S.J., Cameron C.M., Hewison R.L., Potts J.M. Explaining the variation in the soil microbial community: do vegetation composition and soil chemistry explain the same or different parts of the microbial variation?. Plant and Soil 2012, 351:355-362.
39. Nemergut D., Anderson S., Cleveland C., Martin A., Miller A. Microbial community succession in an unvegetated, recently deglaciated soil. Microbial Ecology 2007, 53:110-122.
40. Otto R., Krusi B.O., Burga C.A., Fernandez Palacios J.M. Old-field succession along a precipitation gradient in the semi-arid coastal region of Tenerife. Journal of Arid Environments 2006, 65:156-178.
41. Peinado M., Alcaraz F., Martínez-Parra J.M. Vegetation of Southeastern Spain 1992, Cramer, J., Berlin.
42. Pérez Pujalte A., Oyonarte C., García-Chicano J.L., Burgos R., Quesada M.C., Guirado J.L., Diaz J.L. Mapa de Suelos de Tabernas a escala 1:100.000 1987, Proyecto LUCDEME. Revisatlas, Madrid.
43. Pugnaire F.I., Armas C., Valladares F. Soil as a mediator in plant-plant interactions in a semi-arid community. Journal of Vegetation Science 2004, 15:85-92.
44. Rayner A.D.M., Boddy L. Fungal Decomposition of Wood: its Biology and Ecology 1988, Wiley, California.
45. Rodríguez-Echeverría S., Armas C., Piston N., Hortal S., Pugnaire F.I. Arole for below-ground biota in plant-plant facilitation. Journal of Ecology 2013, 101:1420-1428.
46. Rowlands P.G. Recovery, Succession, and Revegetation in the Mojave Desert, the Effects of Disturbance on Desert Soils, Vegetation, and Community Processes with Emphasis on Off-road Vehicles: a Critical Review 1980, Bureau of Land Management, California.
47. Scott A.J., Morgan J.W. Recovery of soil and vegetation in semi-arid Australian old fields. Journal of Arid Environments 2012, 76:61-71.
48. Schlatter D.C., DavelosBaines A.L., Xiao K., Kinkel L.L. Resource use of soilborne Streptomyces varies with location, phylogeny, and nitrogen amendment. Microbial Ecology 2013, 66:961-971.
49. Schumacher B.A. Methods for the Determination of Total Organic Carbon (TOC) in Soils and Sediments 2002, Ecological Risk Assessment Support Center Office of Research and Development, US, Las vegas.
50. Sessitsch A., Weilharter A., Gerzabek M.H., Kirchmann H., Kandeler E. Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment. Applied and Environmental Microbiology 2001, 67:4215-4224.
51. Suela Silva M., Naves Sales A., Teixeira Magalhaes-Guedes K., Ribeiro Dias D., Schwan R. Brazilian Cerrado soil actinobacteria ecology. BioMed Research International 2013, 2013:503805. 10.1155/2013/503805.
52. Tarafdar J.C., Claassen N. Organic phosphorus compounds as a phosphorus source for higher plants through the activity of phosphatases produced by plant roots and microorganisms. Biology and Fertility of Soils 1988, 5:308-312.
53. Tarlera S., Jangid K., Ivester A., Whitman W., Williams M. Microbial community succession and bacterial diversity in soils during 77,000 years of ecosystem development. FEMS Microbiology Ecology 2008, 64:129-140.
54. Tedersoo L., Nilsson R.H., Abarenkov K., Jairus T., Sadam A., Saar I., Bahram M., Bechem E., Chuyong G., Kõljalg U. 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New phytologist 2010, 188:291-301.
55. Tortora G.J., Funke B.R., Case C.L. Introducción a la Microbiología 2007, Editorial Médica Panamericana, Buenos Aires.
56. Tscherko D., Hammesfahr U., Zeltner G., Kandeler E., Bocker R. Plant succession and rhizosphere microbial communities in a recently deglaciated alpine terrain. Basic and Applied Ecology 2005, 6:367-383.
57. Urich P.B. Land Use in Karst Terrain: Review of Impacts of Primary Activities on Temperate Karst Ecosystems 2002, Science Publishing, Wellington.
58. Van der Putten W.H., Bardgett R.D., Bever J.D., Bezemer T.M., Casper B.B., Fukami T., Kardol P., Klironomos J.N., Kulmatiski A., Schweitzer J.A., Suding K.N., Van de Voorde T.F.J., Wardle D.A. Plant-soil feedbacks: the past, the present and future challenges. Journal of Ecology 2013, 101:265-276.
59. Vonmersi W., Schinner F. An improved and accurate method for determining the dehydrogenase-activity of soils with iodonitrotetrazolium chloride. Biology and Fertility of Soils 1991, 11:216-220.
60. Wang Q., Garrity G., Tiedje J., Cole J. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology 2007, 73:5261-5267.
61. Wright E., Yilmaz L.S., Noguera D. DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences. Applied and Environmental Microbiology 2012, 78:717-725.
62. Yang L., Liu N., Ren H., Wang J. Facilitation by two exotic Acacia: Acacia auriculiformis and Acacia mangium as nurse plants in South China. Forest Ecology and Management 2009, 257:1786-1793.