Planktonic actinobacterial diversity along a salinity gradient of a river and five lakes on the Tibetan Plateau

Extremophiles

Volumn 14, Issue 4, 2010, Pages 367-376

  Jiang, Hongchen ^a   Huang, Qiuyuan ^a   Deng, Shicai ^a   Dong, Hailiang ^a,b,c   Yu, Bingsong ^a  

^a China University of Geosciences   (China)

^b CHINA UNIVERSITY OF GEOSCIENCES   (China)

^c MIAMI UNIVERSITY   (United States)

Author keywords

Actinobacteria; Diversity; Salinity; Tibetan Plateau

Indexed keywords

FRESH WATER; PRIMER DNA; RNA 16S; SODIUM CHLORIDE;

ACTINOBACTERIA; ARTICLE; BIODIVERSITY; CHINA; CLASSIFICATION; GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION;

ACTINOBACTERIA; BASE SEQUENCE; BIODIVERSITY; DNA PRIMERS; FRESH WATER; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SODIUM CHLORIDE; TIBET;

ACIDIMICROBIDAE; ACTINOBACTERIA; ACTINOBACTERIDAE; CORYNEBACTERINEAE; FRANKINEAE; MICROCOCCINEAE; PROPIONIBACTERINEAE; STREPTOSPORANGINEAE; UNCLASSIFIED ACTINOBACTERIA; UNCLASSIFIED ACTINOBACTERIDAE;

EID: 77954424601     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-010-0316-5     Document Type: Article

References (36)

1. Allgaier M, Grossart HP (2006) Diversity and seasonal dynamics of Actinobacteria populations in four lakes in northeastern Germany. Appl Environ Microbiol 72: 3489-3497.
2. Cottrell MT, Kirchman DL (2000) Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl Environ Microbiol 66: 5116-5122.
3. Dong H, Zhang G, Jiang H, Yu B, Leah RC, Courtney RL, Fields MW (2006) Microbial diversity in sediment of saline Qinghai Lake, China: linking geochemical controls to microbial ecology. Microb Ecol 51: 65-82.
4. Dong H, Jiang H, Yu B, Li XQ, Zhang CL (2010) Impacts of climate change and human activities on microbial ecosystems on the Tibetan Plateau, NW China. GSA Today 20. doi: 10. 1130/GSATG1175A. 1.
5. Embley TM, Stackebrandt E (1994) The molecular phylogeny and systematics of the Actinomycetes. Annu Rev Microbiol 48: 257-289.
6. Frontier S (1985) Diversity and structure in aquatic ecosystems. Oceanogr Mar Biol 23: 253-312.
7. Hacine H, Rafa F, Chebhouni N, Boutaiba S, Bhatnagar T, Barratti JC, Ollivier B (2004) Biodiversity of prokaryotic microflora in E1 Golea Salt lake, Algerian Sahara. J Arid Environ 58: 273-284.
8. Hahn MW (2009) Description of seven candidate species affiliated with the phylum Actinobacteria, representing planktonic freshwater bacteria. Int J Syst Evol Microbiol 59: 112-117.
9. Hahn MW, Lunsdorf H, Wu QL, Schauer M, Hofle MG, Boenigk J, Stadler P (2003) Isolation of novel ultramicrobacteria classified as actinobacteria from five freshwater habitats in Europe and Asia. Appl Environ Microbiol 69: 1442-1451.
10. Hammer UT (1986) Saline lake ecosystems of the world. Springer, The Netherlands.
11. Harris JK, Kelley ST, Pace NR (2004) New perspective on uncultured bacterial phylogenetic division OP11. Appl Environ Microbiol 70: 845-849.
12. Holmfeldt K, Dziallas C, Titelman J, Pohlmann K, Grossart H-P, Riemann L (2009) Diversity and abundance of freshwater Actinobacteria along environmental gradients in the brackish northern Baltic Sea. Environ Microbiol 11: 2042-2054.
13. Hosomi M, Sudo R (1986) Simultaneous determination of total nitrogen and total phosphorus in freshwater samples using persulfate digestion. Int J Environ Stud 27: 267-275.
14. Hugenholtz P, Pitulle C, Hershberger KL, Pace NR (1998) Novel division level bacterial diversity in a Yellowstone hot spring. J Bacteriol 180: 366-376.
15. Jiang H, Dong H, Zhang G, Yu B, Chapman LR, Fields MW (2006) Microbial diversity in water and sediment of Lake Chaka: an athalassohaline lake in northwestern China. Appl Environ Microbiol 72: 3832-3845.
16. Jiang H, Dong H, Yu B, Ye Q, Shen J, Rowe H, Zhang C (2008) Dominance of putative marine benthic archaea in Qinghai Lake, northwestern China. Environ Microbiol 10: 2355-2367.
17. Jiang H, Dong H, Deng S, Yu B, Huang Q, Wu Q (2009a) Response of archaeal community structure to environmental changes in lakes on the Tibetan Plateau, northwestern China. Geomicrobiol J 26: 289-297.
18. Jiang H, Dong H, Yu B, Lv G, Deng S, Wu Y, Dai M, Jiao N (2009b) Abundance and diversity of aerobic anoxygenic phototrophic bacteria in saline lakes on the Tibetan Plateau. FEMS Microbiol Ecol 67: 268-278.
19. Liu Y, Yao T, Jiao N, Kang S, Huang S, Li Q, Wang K, Liu X (2009) Culturable bacteria in glacial meltwater at 6, 350 m on the East Rongbuk Glacier, Mount Everest. Extremophiles 13: 89-99.
20. Mancinelli RL (2005) Microbial life in brines, evaporites and saline sediments: the search for life on Mars. In: Tokano T (eds) Water on Mars and life. Springer, Berlin, pp 277-297.
21. Mendez MO, Neilson JW, Maier RM (2008) Characterization of a bacterial community in an abandoned semiarid lead-zinc mine tailing site. Appl Environ Microbiol 74: 3899-3907.
22. Mevs U, Stackebrandt E, Schumann P, Gallikowski CA, Hirsch P (2000) Modestobacter multiseptatus gen. nov., sp. nov., a budding actinomycete from soils of the Asgard Range (Transantarctic Mountains). Int J Syst Evol Microbiol 50: 337-346.
23. Mohagheghi A, Grohmann K, Himmel M, Leighton L, Updegraff DM (1986) Isolation and characterization of Acidothermus cellulolyticus gen. nov., sp. nov., a new genus of thermophilic, acidophilic, cellulolytic bacteria. Int J Syst Bacteriol 36: 435-443.
24. Newton RJ, Jones SE, Helmus MR, McMahon KD (2007) Phylogenetic ecology of the freshwater Actinobacteria acI lineage. Appl Environ Microbiol 73: 7169-7176.
25. Piao Z, Yang L, Zhao L, Yin S (2008) Actinobacterial community structure in soils receiving long-term organic and inorganic amendments. Appl Environ Microbiol 74: 526-530.
26. Schloss PD, Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
27. Song Z, Jiang H, Zhi X, Zhang C, Dong H, Li W (2009) Actinobacterial diversity in hot springs in Tengchong (China), Kamchatka (Russia), and Nevada (USA). Geomicrobiol J 26: 256-263.
28. Stach JE, Bull AT (2005) Estimating and comparing the diversity of marine Actinobacteria. Antonie van Leeuwenhoek 87: 1572-9699.
29. Stach JE, Maldonado LA, Ward AC, Goodfellow M, Bull AT (2003) New primers for the class Actinobacteria: application to marine and terrestrial environments. Environ Microbiol 5: 828-841.
30. Tiago I, Chung AP, Verissimo A (2004) Bacterial diversity in a nonsaline alkaline environment: heterotrophic aerobic populations. Appl Environ Microbiol 70: 7378-7387.
31. Wang S-M, Dou H-S (1998) Lakes in China (in Chinese). Science Press, Beijing.
32. Warnecke F, Amann R, Pernthaler J (2004) Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages. Environ Microbiol 6: 242-253.
33. Warnecke F, Sommaruga R, Sekar R, Hofer JS, Pernthaler J (2005) Abundances, identity, and growth state of actinobacteria in mountain lakes of different UV transparency. Appl Environ Microbiol 71: 5551-5559.
34. Wu J, Guan T, Jiang H, Zhi X, Tang S, Dong H, Zhang L, Li W (2009) Diversity of actinobacterial community in saline sediments from Yunnan and Xinjiang, China. Extremophiles 13: 623-632.
35. Zheng MP (1995) An introduction to saline lakes on the Qinghai-Tibet Plateau. Kluwer, Dordrecht.
36. Zwart G, Crump BC, Kamst-van Agterveld MP, Hagen F, Han S-K (2002) Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers. Aquat Microb Ecol 128: 141-155.