A functional involvement of ABCE1, eukaryotic ribosome recycling factor, in nonstop mRNA decay in Drosophila melanogaster cells

Biochimie

Volumn 106, Issue , 2014, Pages 10-16

  Kashima, Isao ^a,b   Takahashi, Masaki ^a   Hashimoto, Yoshifumi ^a   Sakota, Eri ^a   Nakamura, Yoshikazu ^a   Inada, Toshifumu ^b  

^a UNIVERSITY OF TOKYO   (Japan)

^b TOHOKU UNIVERSITY   (Japan)

Author keywords

ABCE1; mRNA surveillance; Nonstop decay (NSD); Protein surveillance; Translation termination

Indexed keywords

ABCE 1 PROTEIN; DOUBLE STRANDED RNA; MESSENGER RNA; RIBOSOME RECYCLING FACTOR; UBIQUITIN PROTEIN LIGASE E3; UNCLASSIFIED DRUG; ABC TRANSPORTER; DROSOPHILA PROTEIN; PIXIE PROTEIN, DROSOPHILA; RNA; STOP CODON; UBIQUITIN PROTEIN LIGASE;

ANIMAL CELL; ARTICLE; DROSOPHILA MELANOGASTER; NONHUMAN; NONSENSE MEDIATED MRNA DECAY; NONSTOP DECAY; PROTEIN DEGRADATION; QUALITY CONTROL; RNA INTERFERENCE; STOP CODON; ANIMAL; CELL LINE; CYTOLOGY; GENE EXPRESSION; GENETICS; METABOLISM; NORTHERN BLOTTING; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RIBOSOME; RNA STABILITY; TRANSGENIC ANIMAL; WESTERN BLOTTING;

ANIMALS; ANIMALS, GENETICALLY MODIFIED; ATP-BINDING CASSETTE TRANSPORTERS; BLOTTING, NORTHERN; BLOTTING, WESTERN; CELL LINE; CODON, TERMINATOR; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; GENE EXPRESSION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RIBOSOMES; RNA; RNA INTERFERENCE; RNA STABILITY; RNA, MESSENGER; UBIQUITIN-PROTEIN LIGASES;

EID: 84908030206     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2014.08.001     Document Type: Article

References (39)

1. P.A. Frischmeyer, A. van Hoof, K. O'Donnell, A.L. Guerrerio, R. Parker, and H.C. Dietz An mRNA surveillance mechanism that eliminates transcripts lacking termination codons Science 295 2002 2258 2261
2. A. van Hoof, P.A. Frischmeyer, H.C. Dietz, and R. Parker Exosome-mediated recognition and degradation of mRNAs lacking a termination codon Science 295 2002 2262 2264
3. T. Izawa, T. Tsuboi, K. Kuroha, T. Inada, S. Nishikawa, and T. Endo Roles of dom34:hbs1 in nonstop protein clearance from translocators for normal organelle protein influx Cell Rep. 2 2012 447 453
4. T.I. Orban, and E. Izaurralde Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome RNA 11 2005 459 469
5. T. Inada Quality control systems for aberrant mRNAs induced by aberrant translation elongation and termination Biochim. Biophys. Acta 1829 2013 634 642
6. T. Inada, and H. Aiba Translation of aberrant mRNAs lacking a termination codon or with a shortened 3'-UTR is repressed after initiation in yeast EMBO J. 24 2005 1584 1595
7. S. Meaux, and A. Van Hoof Yeast transcripts cleaved by an internal ribozyme provide new insight into the role of the cap and poly(A) tail in translation and mRNA decay RNA 12 2006 1323 1337
8. G.C. Atkinson, S.L. Baldauf, and V. Hauryliuk Evolution of nonstop, no-go and nonsense-mediated mRNA decay and their termination factor-derived components BMC Evol. Biol. 8 2008 290
9. K. Kobayashi, I. Kikuno, K. Kuroha, K. Saito, K. Ito, R. Ishitani, T. Inada, and O. Nureki Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1alpha complex Proc. Natl. Acad. Sci. U. S. A. 107 2010 17575 17579
10. K. Saito, K. Kobayashi, M. Wada, I. Kikuno, A. Takusagawa, M. Mochizuki, T. Uchiumi, R. Ishitani, O. Nureki, and K. Ito Omnipotent role of archaeal elongation factor 1 alpha (EF1alpha in translational elongation and termination, and quality control of protein synthesis Proc. Natl. Acad. Sci. U. S. A. 107 2010 19242 19247
11. A. Carr-Schmid, C. Pfund, E.A. Craig, and T.G. Kinzy Novel G-protein complex whose requirement is linked to the translational status of the cell Mol. Cell. Biol. 22 2002 2564 2574
12. L. Chen, D. Muhlrad, V. Hauryliuk, Z. Cheng, M.K. Lim, V. Shyp, R. Parker, and H. Song Structure of the Dom34-Hbs1 complex and implications for no-go decay Nat. Struct. Mol. Biol. 17 2010 1233 1240
13. A.M. van den Elzen, J. Henri, N. Lazar, M.E. Gas, D. Durand, F. Lacroute, M. Nicaise, H. van Tilbeurgh, B. Seraphin, and M. Graille Dissection of Dom34-Hbs1 reveals independent functions in two RNA quality control pathways Nat. Struct. Mol. Biol. 17 2010 1446 1452
14. Y. Nakamura, and K. Ito tRNA mimicry in translation termination and beyond Wiley Interdiscip. Rev. RNA 2 2011 647 668
15. C.J. Shoemaker, and R. Green Translation drives mRNA quality control Nat. Struct. Mol. Biol. 19 2012 594 601
16. S. Franckenberg, T. Becker, and R. Beckmann Structural view on recycling of archaeal and eukaryotic ribosomes after canonical termination and ribosome rescue Curr. Opin. Struct. Biol. 22 2012 786 796
17. C.J. Shoemaker, D.E. Eyler, and R. Green Dom34:Hbs1 promotes subunit dissociation and peptidyl-tRNA drop-off to initiate no-go decay Science 330 2010 369 372
18. C.J. Shoemaker, and R. Green Kinetic analysis reveals the ordered coupling of translation termination and ribosome recycling in yeast Proc. Natl. Acad. Sci. U. S. A. 108 2011 E1392 E1398
19. T. Tsuboi, K. Kuroha, K. Kudo, S. Makino, E. Inoue, I. Kashima, and T. Inada Dom34:hbs1 plays a general role in quality-control systems by dissociation of a stalled ribosome at the 3' end of aberrant mRNA Mol. Cell. 46 2012 518 529
20. S. Saito, N. Hosoda, and S. Hoshino The Hbs1-Dom34 protein complex functions in non-stop mRNA decay in mammalian cells J. Biol. Chem. 288 2013 17832 17843
21. A.V. Pisarev, M.A. Skabkin, V.P. Pisareva, O.V. Skabkina, A.M. Rakotondrafara, M.W. Hentze, C.U. Hellen, and T.V. Pestova The role of ABCE1 in eukaryotic posttermination ribosomal recycling Mol. Cell. 37 2010 196 210
22. V.P. Pisareva, M.A. Skabkin, C.U. Hellen, T.V. Pestova, and A.V. Pisarev Dissociation by Pelota, Hbs1 and ABCE1 of mammalian vacant 80S ribosomes and stalled elongation complexes EMBO J. 30 2011 1804 1817
23. L.N. Dimitrova, K. Kuroha, T. Tatematsu, and T. Inada Nascent peptide-dependent translation arrest leads to Not4p-mediated protein degradation by the proteasome J. Biol. Chem. 284 2009 10343 10352
24. D. Gatfield, L. Unterholzner, F.D. Ciccarelli, P. Bork, and E. Izaurralde Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways EMBO J. 22 2003 3960 3970
25. R. Matsuda, K. Ikeuchi, S. Nomura, and T. Inada Protein quality control systems associated with no-go and nonstop mRNA surveillance in yeast Genes Cells 19 2013 1 12
26. M.H. Bengtson, and C.A. Joazeiro Role of a ribosome-associated E3 ubiquitin ligase in protein quality control Nature 467 2010 470 473
27. M.W. Popp, and L.E. Maquat Organizing principles of mammalian nonsense-mediated mRNA decay Annu. Rev. Genet. 47 2013 139 165
28. J. Lykke-Andersen, and E.J. Bennett Quality control: protecting the proteome: eukaryotic cotranslational quality control pathways J. Cell Biol. 204 2014 467 476
29. S. Kervestin, and A. Jacobson NMD: a multifaceted response to premature translational termination Nat. Rev. Mol. Cell Biol. 13 2012 700 712
30. S. Khoshnevis, T. Gross, C. Rotte, C. Baierlein, R. Ficner, and H. Krebber The iron-sulphur protein RNase L inhibitor functions in translation termination EMBO Rep. 11 2010 214 219
31. T. Becker, S. Franckenberg, S. Wickles, C.J. Shoemaker, A.M. Anger, J.P. Armache, H. Sieber, C. Ungewickell, O. Berninghausen, I. Daberkow, A. Karcher, M. Thomm, K.P. Hopfner, R. Green, and R. Beckmann Structural basis of highly conserved ribosome recycling in eukaryotes and archaea Nature 482 2012 501 506
32. M.K. Doma, and R. Parker Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation Nature 440 2006 561 564
33. K. Kuroha, M. Akamatsu, L. Dimitrova, T. Ito, Y. Kato, K. Shirahige, and T. Inada Receptor for activated C kinase 1 stimulates nascent polypeptide-dependent translation arrest EMBO Rep. 11 2010 956 961
34. K. Kuroha, N. Horiguchi, H. Aiba, and T. Inada Analysis of nonstop mRNA translation in the absence of tmRNA in Escherichia coli Genes Cells 14 2009 739 749
35. S. Ito-Harashima, K. Kuroha, T. Tatematsu, and T. Inada Translation of the poly(A) tail plays crucial roles in nonstop mRNA surveillance via translation repression and protein destabilization by proteasome in yeast Genes Dev. 21 2007 519 524
36. C. Bebeacua, A. Forster, C. McKeown, H.H. Meyer, X. Zhang, and P.S. Freemont Distinct conformations of the protein complex p97-Ufd1-Npl4 revealed by electron cryomicroscopy Proc. Natl. Acad. Sci. U. S. A. 109 2012 1098 1103
37. O. Brandman, J. Stewart-Ornstein, D. Wong, A. Larson, C.C. Williams, G.W. Li, S. Zhou, D. King, P.S. Shen, J. Weibezahn, J.G. Dunn, S. Rouskin, T. Inada, A. Frost, and J.S. Weissman A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress Cell 151 2012 1042 1054
38. Q. Defenouillere, Y. Yao, J. Mouaikel, A. Namane, A. Galopier, L. Decourty, A. Doyen, C. Malabat, C. Saveanu, A. Jacquier, and M. Fromont-Racine Cdc48-associated complex bound to 60S particles is required for the clearance of aberrant translation products Proc. Natl. Acad. Sci. U. S. A. 110 2013 5046 5051
39. K.J. Livak, and T.D. Schmittgen Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method Methods 25 2001 402 408