메뉴 건너뛰기




Volumn 11, Issue 5, 2014, Pages 853-862

acc-Motif: Accelerated network motif detection

Author keywords

Algorithm analysis; Network motifs; Subgraph counting

Indexed keywords

DIRECTED GRAPHS;

EID: 84907962465     PISSN: 15455963     EISSN: 15579964     Source Type: Journal    
DOI: 10.1109/TCBB.2014.2321150     Document Type: Article
Times cited : (43)

References (31)
  • 2
    • 39649124450 scopus 로고    scopus 로고
    • What is a complex graph
    • Available
    • J. Kim and T. Wilhelm, (2008). What is a complex graph.Physica A: Statist. Mech. Appl. [Online]. 387(11), pp. 2637-2652. Available: http://www.sciencedirect.com/science/article/pii/S0378437108000319
    • (2008) Physica A: Statist. Mech. Appl. [Online] , vol.387 , Issue.11 , pp. 2637-2652
    • Kim, J.1    Wilhelm, T.2
  • 3
    • 42549148783 scopus 로고    scopus 로고
    • Web appearance disambiguation of personal names based on network motif
    • [Online]. Available
    • K.-H. Yang, K.-Y. Chiou, H.-M. Lee, and J.-M. Ho. (2006). "Web appearance disambiguation of personal names based on network motif." in Proc. IEEE/WIC/ACM Int. Conf. Web Intell., pp. 386-389. [Online]. Available: http://dx.doi.org/10.1109/WI.2006.189
    • (2006) Proc. IEEE/WIC/ACM Int. Conf. Web Intell. , pp. 386-389
    • Yang, K.-H.1    Chiou, K.-Y.2    Lee, H.-M.3    Ho, J.-M.4
  • 4
    • 77951575957 scopus 로고    scopus 로고
    • Using network motifs to identify application protocols
    • [Online]. Available
    • E. G. Allan, Jr., W. H. Turkett, Jr., and E. W. Fulp (2009). "Using network motifs to identify application protocols." in Proc. 28th IEEE Conf. Global Telecommun., pp. 4266-4272. [Online]. Available: http://portal.acm.org/citation.cfm?id=1811982.1812090
    • (2009) Proc. 28th IEEE Conf. Global Telecommun. , pp. 4266-4272
    • Allan, E.G.1    Turkett, W.H.2    Fulp, E.W.3
  • 5
    • 2942606066 scopus 로고    scopus 로고
    • Structure and evolution of transcriptional regulatory networks
    • Available
    • M. M. Babu, N. M. Luscombe, L. Aravind, M. Gerstein, and S. A. Teichmann, (2001). "Structure and evolution of transcriptional regulatory networks." Current Opinion Struct. Biol. [Online]. 14(3), pp. 283-291. Available: http://www.sciencedirect.com/science/article/pii/S0959440X04000788
    • (2001) Current Opinion Struct. Biol. [Online] , vol.14 , Issue.3 , pp. 283-291
    • Babu, M.M.1    Luscombe, N.M.2    Aravind, L.3    Gerstein, M.4    Teichmann, S.A.5
  • 6
    • 0037743679 scopus 로고    scopus 로고
    • Convergent evolution of gene circuits
    • Jul.. Available
    • G. C. Conant and A. Wagner, (2003, Jul.). Convergent evolution of gene circuits. Nature Genetics [Online]. 34(3), pp. 264-266. Available: http://dx.doi.org/10.1038/ng1181
    • (2003) Nature Genetics [Online] , vol.34 , Issue.3 , pp. 264-266
    • Conant, G.C.1    Wagner, A.2
  • 8
    • 4444268694 scopus 로고    scopus 로고
    • Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs
    • Jul.. Available
    • N. Kashtan, S. Itzkovitz, R. Milo, and U. Alon, (2004, Jul.). Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs. Bioinformatics, [Online]. 20(11), pp. 1746-1758. Available: http://dx.doi.org/10.1093/bioinformatics/bth163
    • (2004) Bioinformatics, [Online] , vol.20 , Issue.11 , pp. 1746-1758
    • Kashtan, N.1    Itzkovitz, S.2    Milo, R.3    Alon, U.4
  • 9
    • 33749543885 scopus 로고    scopus 로고
    • Nemofinder: Dissecting genome-wide protein-protein interactions with mesoscale network motifs
    • [Online]. Available
    • J. Chen, W. Hsu, M. L. Lee, and S.-K. Ng. (2006). "Nemofinder: Dissecting genome-wide protein-protein interactions with mesoscale network motifs," in Proc. 12th ACM SIGKDD Int. Conf. Knowl. Discovery Data Mining, pp. 106-115. [Online]. Available: http://doi.acm.org/10.1145/1150402.1150418.
    • (2006) Proc. 12th ACM SIGKDD Int. Conf. Knowl. Discovery Data Mining , pp. 106-115
    • Chen, J.1    Hsu, W.2    Lee, M.L.3    Ng, S.-K.4
  • 10
    • 33646153295 scopus 로고    scopus 로고
    • Fanmod: A tool for fast network motif detection
    • S. Wernicke and F. Rasche, "Fanmod: A tool for fast network motif detection," Bioinformatics, vol. 22, no. 9, pp. 1152-1153, 2006.
    • (2006) Bioinformatics , vol.22 , Issue.9 , pp. 1152-1153
    • Wernicke, S.1    Rasche, F.2
  • 11
    • 34547469442 scopus 로고    scopus 로고
    • Network motif discovery using subgraph enumeration and symmetry-breaking
    • [Online]. Available
    • J. A. Grochow and M. Kellis. (2007). "Network motif discovery using subgraph enumeration and symmetry-breaking," in Proc. 11th Annu. Int. Conf. Res. Comput. Molecular Biol., pp. 92-106. [Online]. Available: http://dl.acm.org/citation.cfm?id=1758222.1758229.
    • (2007) Proc. 11th Annu. Int. Conf. Res. Comput. Molecular Biol. , pp. 92-106
    • Grochow, J.A.1    Kellis, M.2
  • 12
    • 76749118079 scopus 로고    scopus 로고
    • MODA: An efficient algorithm for network motif discovery in biological networks
    • S. Omidi, F. Schreiber, and A. Masoudi-Nejad, "MODA: An efficient algorithm for network motif discovery in biological networks," Genes Genetics Syst., vol. 84, pp. 385-395, 2009.
    • (2009) Genes Genetics Syst. , vol.84 , pp. 385-395
    • Omidi, S.1    Schreiber, F.2    Masoudi-Nejad, A.3
  • 14
    • 24144495559 scopus 로고    scopus 로고
    • Mavisto: A tool for the exploration of network motifs
    • F. Schreiber and H. Schwöbbermeyer, "Mavisto: A tool for the exploration of network motifs," Bioinformatics, vol. 21, no. 17, pp. 3572-3574, 2005.
    • (2005) Bioinformatics , vol.21 , Issue.17 , pp. 3572-3574
    • Schreiber, F.1    Schwöbbermeyer, H.2
  • 15
    • 44349107818 scopus 로고    scopus 로고
    • A review on models and algorithms for motif discovery in protein-protein interaction networks
    • G. Ciriello and C. Guerra, "A review on models and algorithms for motif discovery in protein-protein interaction networks," Briefings Functional Genomics Proteomics, vol. 7, no. 2, pp. 147-156, 2008.
    • (2008) Briefings Functional Genomics Proteomics , vol.7 , Issue.2 , pp. 147-156
    • Ciriello, G.1    Guerra, C.2
  • 16
    • 77949856178 scopus 로고    scopus 로고
    • Strategies for network motifs discovery
    • [Online]. Available
    • P. Ribeiro, F. Silva, and M. Kaiser. (2009). Strategies for network motifs discovery. in Proc. 5th IEEE Int. Conf. E-Sci., pp. 80-87. [Online]. Available: http://dx.doi.org/10.1109/e-Science.2009.20
    • (2009) Proc. 5th IEEE Int. Conf. E-Sci. , pp. 80-87
    • Ribeiro, P.1    Silva, F.2    Kaiser, M.3
  • 17
    • 84863253706 scopus 로고    scopus 로고
    • Biological network motif detection: Principles and practice
    • E. Wong, B. Baur, S. Quader, and C.-H. Huang, "Biological network motif detection: Principles and practice," Brief Bioinformat., vol. 13, pp. 202-215, 2011.
    • (2011) Brief Bioinformat. , vol.13 , pp. 202-215
    • Wong, E.1    Baur, B.2    Quader, S.3    Huang, C.-H.4
  • 21
    • 84871286847 scopus 로고    scopus 로고
    • Netmode: Network motif detection without nauty
    • X. Li, D.S. Stones, H. Wang, H. Deng, X. Liu, and G. Wang, "Netmode: Network motif detection without nauty," PloS One, vol. 7, no. 12, p. e50093, 2012.
    • (2012) PloS One , vol.7 , Issue.12 , pp. e50093
    • Li, X.1    Stones, D.S.2    Wang, H.3    Deng, H.4    Liu, X.5    Wang, G.6
  • 22
    • 84857913562 scopus 로고    scopus 로고
    • Arboricity, h-index, and dynamic algorithms
    • Available
    • M. C. Lin, F. J. Soulignac, and J. L. Szwarcfiter, (2012). Arboricity, h-index, and dynamic algorithms. Theoretical Comput. Sci. [Online]. 426-427, pp. 75-90. Available: http://www.sciencedirect.com/science/article/pii/S0304397511009662
    • (2012) Theoretical Comput. Sci. [Online] , vol.426-427 , pp. 75-90
    • Lin, M.C.1    Soulignac, F.J.2    Szwarcfiter, J.L.3
  • 23
    • 12344273375 scopus 로고    scopus 로고
    • Modeling interactome: Scale-free or geometric?
    • N. Pržulj, D. G. Corneil, and I. Jurisica, "Modeling interactome: Scale-free or geometric?" Bioinformatics, vol. 20, no. 18, pp. 3508-3515, 2004.
    • (2004) Bioinformatics , vol.20 , Issue.18 , pp. 3508-3515
    • Pržulj, N.1    Corneil, D.G.2    Jurisica, I.3
  • 24
    • 84907986908 scopus 로고    scopus 로고
    • Uncovering biological network function via graphlet degree signatures
    • Jan.. arXiv, Available
    • T. Milenkovic and N. Przulj. (2008, Jan.). "Uncovering biological network function via graphlet degree signatures.," arXiv, q-bio. MN. [Online]. Available: http://arxiv.org/abs/0802.0556v1
    • (2008) Q-bio. MN. [Online]
    • Milenkovic, T.1    Przulj, N.2
  • 26
    • 33646153295 scopus 로고    scopus 로고
    • Fanmod: A tool for fast network motif detection
    • S. Wernicke and F. Rasche., "Fanmod: A tool for fast network motif detection," Bioinformatics, vol. 22, pp. 1152-1153, 2006.
    • (2006) Bioinformatics , vol.22 , pp. 1152-1153
    • Wernicke, S.1    Rasche, F.2
  • 27
    • 84907973669 scopus 로고    scopus 로고
    • Weakly connected digraph
    • Jun.. [Online]. Available
    • E. W. Weisstein, "Weakly connected digraph," From MathWorld-AWolfram Web Resource. (2014, Jun.). [Online]. Available: http://mathworld.wolfram.com/WeaklyConnectedDigraph.html
    • (2014) From MathWorld-AWolfram Web Resource
    • Weisstein, E.W.1
  • 28
    • 0022011993 scopus 로고
    • Arboricity and subgraph listing algorithms
    • Feb. Available
    • N. Chiba and T. Nishizeki, (1985, Feb). Arboricity and subgraph listing algorithms. SIAM J. Comput. [Online]. 14(1), pp. 210-223. Available: http://dx.doi.org/10.1137/0214017
    • (1985) SIAM J. Comput. [Online] , vol.14 , Issue.1 , pp. 210-223
    • Chiba, N.1    Nishizeki, T.2
  • 30
    • 54949104981 scopus 로고    scopus 로고
    • [Online]. Available
    • V. Batagelj and A. Mrvar, Pajek data sets. (2005) [Online]. Available: http://vlado.fmf.uni-lj.si/pub/networks/data/
    • (2005) Pajek Data Sets
    • Batagelj, V.1    Mrvar, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.