-
1
-
-
61349179532
-
Phosphorylation analysis of primary human T lymphocytes using sequential IMAC and titanium oxide enrichment
-
Carrascal, M., Ovelleiro, D., Casas, V., Gay, M., Abian, J., Phosphorylation analysis of primary human T lymphocytes using sequential IMAC and titanium oxide enrichment. J. Proteome Res. 2008, 7, 5167-5176.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 5167-5176
-
-
Carrascal, M.1
Ovelleiro, D.2
Casas, V.3
Gay, M.4
Abian, J.5
-
2
-
-
33749853607
-
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
-
Beausoleil, S. A., Villén, J., Gerber, S. A., Rush, J., Gygi, S. P., A probability-based approach for high-throughput protein phosphorylation analysis and site localization. Nat. Biotechnol. 2006, 24, 1285-1292.
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 1285-1292
-
-
Beausoleil, S.A.1
Villén, J.2
Gerber, S.A.3
Rush, J.4
Gygi, S.P.5
-
3
-
-
68049108471
-
LymPHOS: design of a phosphosite database of primary human T cells
-
Ovelleiro, D., Carrascal, M., Casas, V., Abian, J., LymPHOS: design of a phosphosite database of primary human T cells. Proteomics 2009, 9, 3741-3751.
-
(2009)
Proteomics
, vol.9
, pp. 3741-3751
-
-
Ovelleiro, D.1
Carrascal, M.2
Casas, V.3
Abian, J.4
-
4
-
-
84907869714
-
-
The GNU General Public License v3.0-GNU project-free software Foundation (FSF) n.d.
-
The GNU General Public License v3.0-GNU project-free software Foundation (FSF) n.d.
-
-
-
-
5
-
-
7044246160
-
Open mass spectrometry search algorithm
-
Geer, L. Y., Markey, S. P., Kowalak, J. A., Wagner, L. et al., Open mass spectrometry search algorithm. J. Proteome Res. 2004, 3, 958-964.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 958-964
-
-
Geer, L.Y.1
Markey, S.P.2
Kowalak, J.A.3
Wagner, L.4
-
6
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng, J. K., McCormack, A. L., Yates, J. R., III, An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates III, J.R.3
-
7
-
-
0141989734
-
PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry
-
Ma, B., Zhang, K., Hendrie, C., Liang, C. et al., PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry. Rapid Commun. Mass Spectrom. 2003, 17, 2337-2342.
-
(2003)
Rapid Commun. Mass Spectrom.
, vol.17
, pp. 2337-2342
-
-
Ma, B.1
Zhang, K.2
Hendrie, C.3
Liang, C.4
-
8
-
-
0041358793
-
OLAV: towards high-throughput tandem mass spectrometry data identification
-
Colinge, J., Masselot, A., Giron, M., Dessingy, T., Magnin, J., OLAV: towards high-throughput tandem mass spectrometry data identification. Proteomics 2003, 3, 1454-1463.
-
(2003)
Proteomics
, vol.3
, pp. 1454-1463
-
-
Colinge, J.1
Masselot, A.2
Giron, M.3
Dessingy, T.4
Magnin, J.5
-
9
-
-
84872387673
-
EasyProt-an easy-to-use graphical platform for proteomics data analysis
-
Gluck, F., Hoogland, C., Antinori, P., Robin, X. et al., EasyProt-an easy-to-use graphical platform for proteomics data analysis. J. Proteomics 2013, 79, 146-160.
-
(2013)
J. Proteomics
, vol.79
, pp. 146-160
-
-
Gluck, F.1
Hoogland, C.2
Antinori, P.3
Robin, X.4
-
10
-
-
84907869713
-
MS Amanda: a new scoring system for high resolution MS/MS spectra
-
Dorfer, V., Pichler, P., Winkler, S., Mechtler, K., MS Amanda: a new scoring system for high resolution MS/MS spectra. Austrian Proteomic Res. Symp. 2012.
-
(2012)
Austrian Proteomic Res. Symp.
-
-
Dorfer, V.1
Pichler, P.2
Winkler, S.3
Mechtler, K.4
-
11
-
-
84887052462
-
LuciPHOr: algorithm for phosphorylation site localization with false localization rate estimation using modified target-decoy approach
-
Fermin, D., Walmsley, S. J., Gingras, A.-C., Choi, H., Nesvizhskii, A. I., LuciPHOr: algorithm for phosphorylation site localization with false localization rate estimation using modified target-decoy approach. Mol. Cell. Proteomics 2013, 12, 3409-3419.
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 3409-3419
-
-
Fermin, D.1
Walmsley, S.J.2
Gingras, A.-C.3
Choi, H.4
Nesvizhskii, A.I.5
-
12
-
-
74849138649
-
Combining low- and high-energy tandem mass spectra for optimized peptide quantification with isobaric tags
-
Dayon, L., Pasquarello, C., Hoogland, C., Sanchez, J.-C., Scherl, A., Combining low- and high-energy tandem mass spectra for optimized peptide quantification with isobaric tags. J. Proteomics 2010, 73, 769-777.
-
(2010)
J. Proteomics
, vol.73
, pp. 769-777
-
-
Dayon, L.1
Pasquarello, C.2
Hoogland, C.3
Sanchez, J.-C.4
Scherl, A.5
-
13
-
-
76749122411
-
Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses
-
Rudnick, P. A., Clauser, K. R., Kilpatrick, L. E., Tchekhovskoi, D. V. et al., Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses. Mol. Cell. Proteomics 2010, 9, 225-241.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 225-241
-
-
Rudnick, P.A.1
Clauser, K.R.2
Kilpatrick, L.E.3
Tchekhovskoi, D.V.4
-
14
-
-
63049120021
-
Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines
-
Jones, A. R., Siepen, J. A., Hubbard, S. J., Paton, N. W., Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines. Proteomics 2009, 9, 1220-1229.
-
(2009)
Proteomics
, vol.9
, pp. 1220-1229
-
-
Jones, A.R.1
Siepen, J.A.2
Hubbard, S.J.3
Paton, N.W.4
-
15
-
-
48249129089
-
OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine
-
Tharakan, R., Martens, L., Van Eyk, J. E., Graham, D. R., OMSSAGUI: an open-source user interface component to configure and run the OMSSA search engine. Proteomics 2008, 8, 2376-2378.
-
(2008)
Proteomics
, vol.8
, pp. 2376-2378
-
-
Tharakan, R.1
Martens, L.2
Van Eyk, J.E.3
Graham, D.R.4
-
16
-
-
79951750784
-
SearchGUI: an open-source graphical user interface for simultaneous OMSSA and X!Tandem searches
-
Vaudel, M., Barsnes, H., Berven, F. S., Sickmann, A., Lennart Martens, L., SearchGUI: an open-source graphical user interface for simultaneous OMSSA and X!Tandem searches. Proteomics 2011, 11, 996-999.
-
(2011)
Proteomics
, vol.11
, pp. 996-999
-
-
Vaudel, M.1
Barsnes, H.2
Berven, F.S.3
Sickmann, A.4
Lennart Martens, L.5
-
17
-
-
2942568222
-
Unimod: protein modifications for mass spectrometry
-
Creasy, D. M., Cottrell, J. S., Unimod: protein modifications for mass spectrometry. Proteomics 2004, 4, 1534-1536.
-
(2004)
Proteomics
, vol.4
, pp. 1534-1536
-
-
Creasy, D.M.1
Cottrell, J.S.2
-
18
-
-
76149133112
-
Characterization of the human plasma phosphoproteome using linear ion trap mass spectrometry and multiple search engines
-
Carrascal, M., Gay, M., Ovelleiro, D., Casas, V. et al., Characterization of the human plasma phosphoproteome using linear ion trap mass spectrometry and multiple search engines. J. Proteome Res. 2009, 9, 876-884.
-
(2009)
J. Proteome Res.
, vol.9
, pp. 876-884
-
-
Carrascal, M.1
Gay, M.2
Ovelleiro, D.3
Casas, V.4
-
19
-
-
84907869712
-
-
RFC 4627: the application/json Media Type for JavaScript Object Notation (JSON)
-
Crockford, D., RFC 4627: the application/json Media Type for JavaScript Object Notation (JSON) 2006.
-
(2006)
-
-
Crockford, D.1
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