Label-free mass spectrometric profiling of urinary proteins and metabolites from paediatric idiopathic nephrotic syndrome

Biochemical and Biophysical Research Communications

Volumn 452, Issue 1, 2014, Pages 21-26

  Sedic, Mirela ^a   Gethings, Lee A ^b   Vissers, Johannes P C ^b   Shockcor, John P ^b   McDonald, Stephen ^b   Vasieva, Olga ^c   Lemac, Maja ^d   Langridge, James I ^b   Batinić, Danica ^d   Pavelić, Sandra Kraljević ^a  

^a University of Rijeka   (Croatia)

^b WATERS CORPORATION   (United States)

^c UNIVERSITY OF LIVERPOOL   (United Kingdom)

^d KBC Zagreb   (Croatia)

Author keywords

Afamin; Metabolomics; Oxidative stress; Pediatric nephrotic syndrome; Proteomics; Urine

Indexed keywords

ACYLPYRUVASE FAHD1 PROTEIN; AFAMIN; ANGIOTENSINOGEN; BILIVERDIN REDUCTASE A; COPPER ZINC SUPEROXIDE DISMUTASE; GLUTAMINE; MANDELIC ACID; PHENYLALANINE; POTASSIUM SODIUM HYPERPOLARIZATION ACTIVATED CYCLIC NUCLEOTIDE GATED CHANNEL 3; PROTEIN; PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1A; TRANSCORTIN; UNCLASSIFIED DRUG; URIDINE; XAA PRO AMINOPEPTIDASE 1;

ARTICLE; CLINICAL ARTICLE; CONTROLLED STUDY; DOWN REGULATION; HUMAN; KIDNEY FUNCTION; LABEL FREE MASS SPECTROMETRY; MASS SPECTROMETRY; METABOLITE; METABOLOMICS; MOLECULE; NEPHROTIC SYNDROME; NUCLEOTIDE SEQUENCE; OXIDATIVE STRESS; PROTEIN ANALYSIS; PROTEIN URINE LEVEL; PROTEOMICS; UPREGULATION; URINALYSIS; CHILD; FEMALE; KIDNEY DISEASE; MALE; METABOLISM; PROCEDURES; PROTEINURIA; URINE; WESTERN BLOTTING;

BLOTTING, WESTERN; CHILD; FEMALE; HUMANS; KIDNEY DISEASES; MALE; MASS SPECTROMETRY; METABOLOMICS; PROTEINURIA;

EID: 84907858527     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2014.08.016     Document Type: Article

References (27)

1. J.C. Davin, and N.W. Rutjes Nephrotic syndrome in children: from bench to treatment Int. J. Nephrol. 2011 2011 372304 372310
2. A.E. Allison, and J.M. Symons Nephrotic syndrome in childhood Lancet 362 2003 629 639
3. D. Fliser, J. Novak, V. Thongboonkerd, and A. Argilés Advances in urinary proteome analysis and biomarker discovery J. Am. Soc. Nephrol. 18 2007 1057 1071
4. K. Dettmer, P.A. Aronov, and B.D. Hammock Mass spectrometry-based metabolomics Mass Spectrom. Rev. 26 2007 51 78
5. R.H. Bateman, R. Carruthers, J.B. Hoyes, and C. Jones A novel precursor ion discovery method on a hybrid quadrupole orthogonal acceleration time-of-flight (Q-TOF) mass spectrometer for studying protein phosphorylation J. Am. Soc. Mass Spectrom. 13 2002 792 803
6. S.J. Geromanos, J.P. Vissers, J.C. Silva, and C.A. Dorschel The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS Proteomics 9 2009 1683 1695
7. A.R. Vaezzadeh, A.C. Briscoe, H. Steen, and R.S. Lee One-step sample concentration, purification, and albumin depletion method for urinary proteomics J. Proteome Res. 9 2010 6082 6089
8. E. Rodriguez-Suarez, C. Hughes, L.A. Gethings, and K. Giles An ion mobility assisted data independent LC-MS strategy for the analysis of complex biological samples Curr. Anal. Chem. 9 2013 199 211
9. G.Z. Li, J.P. Vissers, J.C. Silva, D. Golick, and M.V. Gorenstein Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures Proteomics 9 2009 1696 1719
10. F. Reisinger, and L. Martens Database on Demand - an online tool for the custom generation of FASTA-formatted sequence databases Proteomics 9 2009 4421 4424
11. J. Zachwieja, W. Bobkowski, A. Dobrowolska-Zachwieja, and M. Lewandowska-Stachowiak Intracellular cytokines of peripheral blood lymphocytes in nephrotic syndrome Pediatr. Nephrol. 17 2002 733 740
12. N. Piyaphanee, Q. Ma, O. Kremen, and K. Czech Discovery and initial validation of α 1-B glycoprotein fragmentation as a differential urinary biomarker in pediatric steroid-resistant nephrotic syndrome Proteomics Clin. Appl. 5 2011 334 342
13. M. Tkaczyk, A. Czupryniak, M. Nowicki, G. Chwatko, and E. Bald Homocysteine and glutathione metabolism in steroid-treated relapse of idiopathic nephrotic syndrome Pol. Merkuriusz Lek. 26 2009 294 297
14. M. Heiser, B. Hutter-Paier, L. Jerkovic, and R. Pfragner Vitamin E binding protein afamin protects neuronal cells in vitro J. Neural Transm. Suppl. 62 2002 337 345
15. T. Shokoji, Y. Fujisawa, S. Kimura, and M. Rahman Effects of local administrations of tempol and diethyldithio-carbamic on peripheral nerve activity Hypertension 44 2004 236 243
16. R. Zeng, Y. Yao, M. Han, and X. Zhao Biliverdin reductase mediates hypoxia-induced EMT via PI3-kinase and Akt JASN 19 2008 380 387
17. M.G. Suranyi, A. Guasch, B.M. Hall, and B.D. Myers Elevated levels of tumor necrosis factor-alpha in the nephrotic syndrome in humans Am. J. Kidney Dis. 21 1993 251 259
18. P.E. Gibbs, and M.D. Maines Biliverdin inhibits activation of NF-kappaB: reversal of inhibition by human biliverdin reductase Int. J. Cancer 121 2007 2567 2574
19. S. Hussain, L. Romio, M. Saleem, and P. Mathieson Nephrin deficiency activates NF-kappaB and promotes glomerular injury J. Am. Soc. Nephrol. 20 2009 1733 1743
20. W. Liao, H. Wei, X. Wang, and Y. Qiu Metabonomic variations associated with AOM-induced precancerous colorectal lesions and resveratrol treatment J. Proteome Res. 11 2012 3436 3448
21. H. Shen, W. Xu, J. Zhang, and M. Chen Urinary metabolic biomarkers link oxidative stress indicators associated with general arsenic exposure to male infertility in a han chinese population Environ. Sci. Technol. 47 2013 8843 8845
22. W. Sui, L. Li, W. Che, and G. Zuo A proton nuclear magnetic resonance-based metabonomics study of metabolic profiling in immunoglobulin a nephropathy Clinics 67 2012 363 373
23. M. Julio-Pieper, P.J. Flor, T.G. Dinan, and J.F. Cryan Exciting times beyond the brain: metabotropic glutamate receptors in peripheral and non-neural tissues Pharmacol. Rev. 63 2011 35 58
24. M.A. Hediger Glutamate transporters in kidney and brain Am. J. Physiol. 277 1999 F487 92
25. A. Puliti, P.I. Rossi, G. Caridi, and A. Corbelli Albuminuria and glomerular damage in mice lacking the metabotropic glutamate receptor 1 Am. J. Pathol. 178 2011 1257 1269
26. M.R. Jones, J.D. Kopple, and M.E. Swendseid Phenylalanine metabolism in uremic and normal man Kidney Int. 14 1978 169 179
27. J.D. Kopple Phenylalanine and tyrosine metabolism in chronic kidney failure J. Nutr. 137 2007 1586S 1590S