Using textons to rank crystallization droplets by the likely presence of crystals

Acta Crystallographica Section D: Biological Crystallography

Volumn 70, Issue 10, 2014, Pages 2702-2718

  Ng, Jia Tsing ^a   Dekker, Carien ^b   Kroemer, Markus ^b   Osborne, Michael ^c   Von Delft, Frank ^a,d,e  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b NOVARTIS PHARMA AG   (Switzerland)

^c UNIVERSITY OF OXFORD   (United Kingdom)

^d DIAMOND LIGHT SOURCE LTD   (United Kingdom)

^e UNIVERSITY OF JOHANNESBURG   (South Africa)

Author keywords

crystallization; identification of crystals; textons

Indexed keywords

PROTEIN;

ALGORITHM; CHEMISTRY; CRYSTALLIZATION; IMAGE PROCESSING; PROCEDURES; REPRODUCIBILITY; X RAY CRYSTALLOGRAPHY;

ALGORITHMS; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; IMAGE PROCESSING, COMPUTER-ASSISTED; PROTEINS; REPRODUCIBILITY OF RESULTS;

EID: 84907855879     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S1399004714017581     Document Type: Article

References (34)

1. Bern, M., Goldberg, D., Stevens, R. C. & Kuhn, P. (2004). J. Appl. Cryst. 37, 279-287.
2. Breiman, L. (2001). Mach. Learn. 45, 5-32.
3. Buchala, S. & Wilson, J. C. (2008). Acta Cryst. D64, 823-833.
4. Corduneanu, A. & Bishop, C. M. (2001). Proceedings of the Eighth International Conference on Artificial Intelligence and Statistics, edited by T. Richardson & T. Jaakkola, pp. 27-34. Burlington: Morgan Kaufmann.
5. Cumbaa, C. A. & Jurisica, I. (2010). J. Struct. Funct. Genomics, 11, 61-69.
6. Gordon, A. D. (1987). J. R. Stat. Soc. Ser. A, 150, 119-137.
7. Islam, A., Reza, S. M. S. & Iftekharuddin, K. M. (2013). IEEE Trans. Biomed. Eng. 60, 3204-3215.
8. Julesz, B. (1981). Nature (London), 290, 91-97.
9. Kawabata, K., Takahashi, M., Saitoh, K., Asama, H., Mishima, T., Sugahara, M. & Miyano, M. (2006). Acta Cryst. D62, 239-245.
10. Kulis, B. & Jordan, M. I. (2011). Proceedings of the 29th International Conference on Machine Learning, edited by J. Langford & J. Pineau, pp. 513-520. Madison: Omnipress.
11. Lekamge, B. M. T., Sowmya, A., Mele, K., Fazio, V. J. & Newman, J. (2013). AIP Conf. Proc. 1557, 270-276.
12. Leung, T. & Malik, J. (2001). Int. J. Comput. Vis. 43, 29-44.
13. Li, X., Williams, S., Lee, G. & Deng, M. (2012). 2012 12th International Conference on Control Automation Robotics and Vision (ICARCV), pp. 1431-1436. doi:10.1109/ICARCV.2012.6485399.
14. Liu, R., Freund, Y. & Spraggon, G. (2008). Acta Cryst. D64, 1187-1195.
15. McPherson, A. & Gavira, J. A. (2014). Acta Cryst. F70, 2-20.
16. Medeiros, R. S., Scharcanski, J. & Wong, A. (2013). 2013 IEEE International Conference on Multimedia and Expo Workshops (ICMEW), pp. 1-4. doi:10.1109/ICMEW.2013.6618258.
17. Mele, K., Lekamge, B. M. T., Fazio, V. J. & Newman, J. (2014). Cryst. Growth Des. 14, 261-269.
18. Morgado, P., Silveira, M. & Costa, D. (2013). 2013 IEEE International Workshop on Machine Learning for Signal Processing (MLSP), pp. 1-6. doi: 10.1109/MLSP.2013.6661913.
19. Newman, J., Bolton, E. E., Müller-Dieckmann, J., Fazio, V. J., Gallagher, D. T., Lovell, D., Luft, J. R., Peat, T. S., Ratcliffe, D., Sayle, R. A., Snell, E. H., Taylor, K., Vallotton, P., Velanker, S. & von Delft, F. (2012). Acta Cryst. F68, 253-258.
20. Pan, S., Shavit, G., Penas-Centeno, M., Xu, D.-H., Shapiro, L., Ladner, R., Riskin, E., Hol, W. & Meldrum, D. (2006). Acta Cryst. D62, 271-279.
21. Qiu, X., Sun, Z. & Tan, T. (2007). IEEE International Conference on Image Processing, 2007. ICIP 2007, Vol. 2, pp. II-405-II-408. doi:10.1109/ICIP.2007.4379178.
22. Schmid, C. (2001). Proceedings of the 2001 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2001.
23. CVPR 2001, Vol. 2, pp. II-39-II-45. doi:10.1109/CVPR.2001.990922
24. Spraggon, G., Lesley, S. A., Kreusch, A. & Priestle, J. P. (2002). Acta Cryst. D58, 1915-1923.
25. Vallotton, P., Sun, C., Lovell, D., Fazio, V. J. & Newman, J. (2010). J. Appl. Cryst. 43, 1548-1552.
26. Varma, M. & Zisserman, A. (2005). Int. J. Comput. Vis. 62, 61-81.
27. Walker, C. G., Foadi, J. & Wilson, J. (2007). J. Appl. Cryst. 40, 418-426.
28. Ward, K. B., Perozzo, M. A. & Zuk, W. M. (1988). J. Cryst. Growth, 90, 325-339.
29. Watts, D., Cowtan, K. & Wilson, J. (2008). J. Appl. Cryst. 41, 8-17.
30. Wei, Z., Qiu, X., Sun, Z. & Tan, T. (2008). 19th International Conference on Pattern Recognition, 2008. ICPR 2008, pp. 1-4. doi:10.1109/ICPR.2008.4761673.
31. Wilson, J. (2002). Acta Cryst. D58, 1907-1914.
32. Zhong, C., Sun, Z. & Tan, T. (2007). IEEE Conference on Computer Vision and Pattern Recognition, 2007. CVPR '07, pp. 1-6. doi:10.1109/CVPR.2007.383279.
33. Zhu, X., Sun, S. & Bern, M. (2004). 26th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2004. IEMBS '04, pp. 1628-1631. doi:10.1109/IEMBS.2004.1403493.
34. Zuk, W. M. & Ward, K. B. (1991). J. Cryst. Growth, 110, 148-155.