On the need for an international effort to capture, share and use crystallization screening data

Acta Crystallographica Section F: Structural Biology and Crystallization Communications

Volumn 68, Issue 3, 2012, Pages 253-258

  Newman, Janet ^a   Bolton, Evan E ^b   Müller Dieckmann, Jochen ^c   Fazio, Vincent J ^a   Gallagher, D Travis ^d   Lovell, David ^e   Luft, Joseph R ^f,g   Peat, Thomas S ^a   Ratcliffe, David ^e   Sayle, Roger A ^h   Snell, Edward H ^f,g   Taylor, Kerry ^e   Vallotton, Pascal ⁱ   Velanker, Sameer ^j   Von Delft, Frank ^k  

^a CSIRO   (Australia)

^b NLM ^*  (United States)

^c EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^d NATIONAL INSTITUTE OF STANDARDS AND TECHNOLOGY   (United States)

^e AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^f HAUPTMAN WOODWARD MEDICAL RESEARCH INSTITUTE   (United States)

^g UNIVERSITY AT BUFFALO   (United States)

^h NextMove Software Ltd   (United Kingdom)

ⁱ MACQUARIE UNIVERSITY   (Australia)

^j WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^k UNIVERSITY OF OXFORD   (United Kingdom)

more..

Author keywords

crystallization ontology; crystallization screening data

Indexed keywords

CRYSTALLIZATION; FACTUAL DATABASE; REVIEW; X RAY CRYSTALLOGRAPHY;

CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; DATABASES, FACTUAL;

EID: 84858990702     PISSN: None     EISSN: 17443091     Source Type: Journal    
DOI: 10.1107/S1744309112002618     Document Type: Review

References (35)

1. Benvenuti, M. & Mangani, S. (2007). Nature Protoc. 2, 1633-1651.
2. Berman, H., Henrick, K., Nakamura, H. &Markley, J. L. (2007). Nucleic Acids Res. 35, D301-D303.
3. Berman, H. M. et al. (2002). Acta Cryst. D58, 899-907.
4. Berman, H. M. et al. (2009). Nucleic Acids Res. 37, D365-D368.
5. Bourne, P. E., Berman, H. M.,McMahon, B.,Watenpaugh, K. D.,Westbrook, J. & Fitzgerald, P. M. D. (1997). Methods Enzymol. 277, 571-590.
6. Carter, C. W. Jr & Carter, C. W. (1979). J. Biol. Chem. 254, 12219-12223.
7. Charles, M., Veesler, S. & Bonneté, F. (2006). Acta Cryst. D62, 1311-1318.
8. Chayen, N. E. & Saridakis, E. (2008). Nature Methods, 5, 147-153.
9. Collins, B., Stevens, R. C. & Page, R. (2005). Acta Cryst. F61, 1035-1038.
10. Cumbaa, C. & Jurisica, I. (2005). J. Struct. Funct. Genomics, 6, 195-202.
11. Gorrec, F. (2009). J. Appl. Cryst. 42, 1035-1042.
12. Hall, S. R., Allen, F. H. & Brown, I. D. (1991). Acta Cryst. A47, 655-685.
13. Jancarik, J. & Kim, S.-H. (1991). J. Appl. Cryst. 24, 409-411.
14. Kimber, M. S., Vallee, F., Houston, S., Necakov, A., Skarina, T., Evdokimova, E., Beasley, S., Christendat, D., Savchenko, A., Arrowsmith, C. H., Vedadi, M., Gerstein, M. & Edwards, A. M. (2003). Proteins, 51, 562-568.
15. Kotseruba, Y., Cumbaa, C. A. & Jurisica, I. (2012). J. Phys. Conf. Ser. In the press.
16. Luft, J. R., Collins, R. J., Fehrman, N. A., Lauricella, A. M., Veatch, C. K. & DeTitta, G. T. (2003). J. Struct. Biol. 142, 170-179.
17. Luft, J. R., Snell, E. H. & DeTitta, G. T. (2011). Expert Opin. Drug Discov. 6, 465-480.
18. Luft, J. R.,Wolfley, J. R. & Snell, E. H. (2011). Cryst. Growth Des. 11, 651-663.
19. Musen, M. A. (2007). Modeling Complex Systems, edited by B. Shuart, W. Spaulding & J. Poland, pp. 145-184. Lincoln: University of Nebraska.
20. Newman, J., Fazio, V. J., Lawson, B. & Peat, T. S. (2010). Cryst. Growth Des. 10, 2785-2792.
21. Noy, N. F. & McGuinness, D. L. (2001). Stanford Knowledge Systems Laboratory Technical Report KSL-01-05 and Stanford Medical Informatics Technical Report SMI-2001-0880, pp. 1-25.
22. Page, R., Grzechnik, S. K., Canaves, J. M., Spraggon, G., Kreusch, A., Kuhn, P., Stevens, R. C. & Lesley, S. A. (2003). Acta Cryst. D59, 1028-1037.
23. Page, R. & Stevens, R. C. (2004). Methods, 34, 373-389.
24. Pan, S., Shavit, G., Penas-Centeno, M., Xu, D.-H., Shapiro, L., Ladner, R., Riskin, E., Hol, W. & Meldrum, D. (2006). Acta Cryst. D62, 271-279.
25. Peat, T. S., Christopher, J. A. & Newman, J. (2005). Acta Cryst. D61, 1662-1669.
26. Price, W. N. et al. (2009). Nature Biotechnol. 27, 51-57.
27. Rupp, B. (2003). J. Struct. Biol. 142, 162-169.
28. Rupp, B. & Wang, J. (2004). Methods, 34, 390-407.
29. Santayana, G. (1905). The Life of Reason, Vol. 1. New York: C. Scribner's Sons.
30. Segelke, B. W. (2001). J. Cryst. Growth, 232, 553-562.
31. Slabinski, L., Jaroszewski, L., Rodrigues, A. P., Rychlewski, L., Wilson, I. A., Lesley, S. A. & Godzik, A. (2007). Protein Sci. 16, 2472-2482.
32. Snell, E. H., Nagel, R. M., Wojtaszcyk, A., O'Neill, H., Wolfley, J. L. & Luft, J. R. (2008). Acta Cryst. D64, 1240-1249.
33. Soldatova, L. N., Clare, A., Sparkes, A. & King, R. D. (2006). Bioinformatics, 22, e464-e471.
34. Tung, M. & Gallagher, D. T. (2009). Acta Cryst. D65, 18-23.
35. Walker, C. G., Foadi, J. & Wilson, J. (2007). J. Appl. Cryst. 40, 418-426.