A pilgrim's guide to G-quadruplex nucleic acid folding

Biochimie

Volumn 105, Issue , 2014, Pages 1-3

  Gabelica, Valérie ^a,b  

^a UNIVERSITÉ DE BORDEAUX   (France)

^b INSERM U869   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BIOPOLYMER; GUANINE QUADRUPLEX; DNA; NUCLEIC ACID;

CELL DIVISION; CHEMICAL REACTION; CIRCULAR DICHROISM; DNA SEQUENCE; HUMAN; HYDRODYNAMICS; HYDROGEN BOND; LANDSCAPE; MOLECULAR DYNAMICS; MOLECULAR MECHANICS; MOLECULAR MODEL; NOTE; NUCLEOTIDE SEQUENCE; PROTEIN DENATURATION; PROTEIN FOLDING; RNA FOLDING; SIGNAL TRANSDUCTION; TEMPERATURE; CHEMISTRY; CONFORMATION; GENETICS; TELOMERE;

BASE SEQUENCE; DNA; G-QUADRUPLEXES; NUCLEIC ACID CONFORMATION; NUCLEIC ACIDS; TELOMERE;

EID: 84907846138     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2014.08.007     Document Type: Letter

References (12)

1. J.N. Onuchic, N.D. Socci, Z. Luthey-Schulten, and P.G. Wolynes Protein folding funnels: the nature of the transition state ensemble Fold. Des. 1 1996 441 450
2. D. Thirumalai, and C. Hyeon RNA and protein folding: common themes and variations Biochemistry 44 2005 4957 4970
3. M. Webba da Silva, M. Trajkovski, Y. Sannohe, N. Ma'ani Hessari, H. Sugiyama, and J. Plavec Design of a G-quadruplex topology through glycosidic bond angles Angew. Chem. Int. Ed. Engl. 48 2009 9167 9170
4. P. Stadlbauer, M. Krepl, T.E. Cheatham 3rd, J. Koca, and J. Sponer Structural dynamics of possible late-stage intermediates in folding of quadruplex DNA studied by molecular simulations Nucleic Acids Res. 41 2013 7128 7143
5. P. Stadlbauer, L. Trantirek, T.E. Cheatham III, J. Koca, and J. Sponer Triplex intermediates in folding of human telomeric quadruplexes probed by microsecond-scale molecular dynamics simulations Biochimie 105 2014 22 35
6. D. Koirala, T. Mashimo, Y. Sannohe, Z. Yu, H. Mao, and H. Sugiyama Intramolecular folding in three tandem guanine repeats of human telomeric DNA Chem. Commun. 48 2012 2006 2008
7. T. Mashimo, H. Yagi, Y. Sannohe, A. Rajendran, and H. Sugiyama Folding pathways of human telomeric type-1 and type-2 G-quadruplex structures J. Am. Chem. Soc. 132 2010 14910 14918
8. R. Buscaglia, R.D. Gray, and J.B. Chaires Thermodynamic characterization of human telomere quadruplex unfolding Biopolymers 99 2013 1006 1018
9. R.D. Gray, J.O. Trent, and J.B. Chaires Folding and unfolding pathways of the human telomeric G-quadruplex J. Mol. Biol. 426 2014 1629 1650
10. A.I. Karsisiotis, N. Ma'ani Hessari, E. Novellino, G.P. Spada, A. Randazzo, and M. Webba da Silva Topological characterization of nucleic acid G-quadruplexes by UV absorption and circular dichroism Angew. Chem. Int. Ed. 50 2011 10645 10648
11. V. Limongelli, S. De Tito, L. Cerofolini, M. Fragai, B. Pagano, R. Trotta, S. Cosconati, L. Marinelli, E. Novellino, I. Bertini, A. Randazzo, C. Luchinat, and M. Parrinello The G-triplex DNA Angew. Chem. Int. Ed. Engl. 52 2013 2269 2273
12. M. Zentgraf, Map of the way of St James in Europe, http://en.wikipedia.org/wiki/Way-of-St.-James#mediaviewer/File:Stjacquescompostelle1.png (accessed July 30.07.14).