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Volumn 13, Issue 4, 2014, Pages 423-434

A sequential naïve Bayes classifier for DNA barcodes

Author keywords

DNA barcoding; Na ve Bayes classifier; phylogenetic analysis; sequential analysis; species classification; species discovery

Indexed keywords

CYTOCHROME C OXIDASE; MITOCHONDRIAL DNA;

EID: 84907705823     PISSN: None     EISSN: 15446115     Source Type: Journal    
DOI: 10.1515/sagmb-2013-0025     Document Type: Article
Times cited : (7)

References (30)
  • 4
    • 0034730598 scopus 로고    scopus 로고
    • High direct estimate of the mutation rate in the mitochondrial genome of caenorhabditis elegans
    • Denver, D., K. Morris, M. Lynch, L. Vassilieva and W. Thomas (2000): "High direct estimate of the mutation rate in the mitochondrial genome of caenorhabditis elegans," Science, 289, 2342-2344.
    • (2000) Science , vol.289 , pp. 2342-2344
    • Denver, D.1    Morris, K.2    Lynch, M.3    Vassilieva, L.4    Thomas, W.5
  • 5
    • 33748949249 scopus 로고    scopus 로고
    • Species discovery versus species identification in DNA barcoding efforts: Response to rubinoff
    • DeSalle, R. (2006): "Species discovery versus species identification in DNA barcoding efforts: response to rubinoff," Conserv. Biol., 20, 1545-1547.
    • (2006) Conserv. Biol. , vol.20 , pp. 1545-1547
    • Desalle, R.1
  • 7
    • 0003371652 scopus 로고    scopus 로고
    • A descriptive and phylogenetic analysis of plumulaceous feather chatacters in Charadriiformes
    • Dove, C. (2000): "A descriptive and phylogenetic analysis of plumulaceous feather chatacters in Charadriiformes," Ornithological Monographs, 51, 1-163.
    • (2000) Ornithological Monographs , vol.51 , pp. 1-163
    • Dove, C.1
  • 8
    • 0036553034 scopus 로고    scopus 로고
    • On the use of genetic divergence for identifying species
    • Ferguson, J. (2002): "On the use of genetic divergence for identifying species," Biol. J. Linn. Soc., 75, C509-C516.
    • (2002) Biol. J. Linn. Soc. , vol.75 , pp. C509-C516
    • Ferguson, J.1
  • 9
    • 50549092313 scopus 로고    scopus 로고
    • Four years of DNA barcoding: Current advances and prospects
    • Frézal, L. and R. Leblois (2008): "Four years of DNA barcoding: Current advances and prospects," Infection, Genetics and Evolution, 8, 727-736.
    • (2008) Infection, Genetics and Evolution , vol.8 , pp. 727-736
    • Frézal, L.1    Leblois, R.2
  • 10
    • 33749540417 scopus 로고    scopus 로고
    • Neighbor-joining revealed
    • Gascuel, O. and M. Steel (2006): "Neighbor-joining revealed," Mole. Biol. Evol., 23, 1997-2000.
    • (2006) Mole. Biol. Evol. , vol.23 , pp. 1997-2000
    • Gascuel, O.1    Steel, M.2
  • 14
    • 0037423543 scopus 로고    scopus 로고
    • Biological identifications through DNA barcodes
    • Hebert, P., A. Cywinska, S. Ball and J. deWaard (2003a): "Biological identifications through DNA barcodes," Proc. R. Soc. (B), 270, 313-322.
    • (2003) Proc. R. Soc. (B) , vol.270 , pp. 313-322
    • Hebert, P.1    Cywinska, A.2    Ball, S.3    Dewaard, J.4
  • 15
    • 0042531561 scopus 로고    scopus 로고
    • Barcoding animal life: Cytochomec oxidase subunit 1 divedrgences among closely related species
    • Hebert, P., S. Ratnasingham and J. deWaard (2003b): "Barcoding animal life: Cytochomec oxidase subunit 1 divedrgences among closely related species," Proc. Biol. Sciences, 270, S96-S99.
    • (2003) Proc. Biol. Sciences , vol.270 , pp. S96-S99
    • Hebert, P.1    Ratnasingham, S.2    Dewaard, J.3
  • 16
    • 0031761786 scopus 로고    scopus 로고
    • A comparative summary of genetic distances in the vertbrates from the mitochondrial cytochrome b gene
    • Johns, G. and J. Avice (1998): "A comparative summary of genetic distances in the vertbrates from the mitochondrial cytochrome b gene," Mole. Biol. Evol., 15, 1481-1490.
    • (1998) Mole. Biol. Evol. , vol.15 , pp. 1481-1490
    • Johns, G.1    Avice, J.2
  • 17
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin, S. and S. Altschul (1990): "Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes," Proc. Natl. Acad. Sci., 2264-2268.
    • (1990) Proc. Natl. Acad. Sci. , pp. 2264-2268
    • Karlin, S.1    Altschul, S.2
  • 20
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980): "A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences," J. Mol. Evol., 16, 111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 21
    • 0034992826 scopus 로고    scopus 로고
    • The closest BLAST hit is often not the nearest neighbor
    • Koski, L. and G. Goulding (2001): "The closest BLAST hit is often not the nearest neighbor," J. Mol. Evol., 52, 540-542.
    • (2001) J. Mol. Evol. , vol.52 , pp. 540-542
    • Koski, L.1    Goulding, G.2
  • 24
    • 29144473686 scopus 로고    scopus 로고
    • DNA barcoding: Error rates based on comprehensive sampling
    • Meyer, C. and G. Paulay (2005): "DNA barcoding: Error rates based on comprehensive sampling," Plos Biol., 3, 2229-2238.
    • (2005) Plos Biol. , vol.3 , pp. 2229-2238
    • Meyer, C.1    Paulay, G.2
  • 25
    • 34248149943 scopus 로고    scopus 로고
    • BOLD: The barcode of life data system
    • Ratnasingham, R. and P. Hebert (2007): "BOLD: The barcode of life data system," Mole. Ecol. Notes, 7, 355-364.
    • (2007) Mole. Ecol. Notes , vol.7 , pp. 355-364
    • Ratnasingham, R.1    Hebert, P.2
  • 26
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstruction phylogenetic trees
    • Saitou, N. and M. Nei (1987): "The neighbor-joining method: A new method for reconstruction phylogenetic trees," Mole. Biol. Evol., 4, 406-425.
    • (1987) Mole. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 27
    • 0141793707 scopus 로고    scopus 로고
    • Taxonomy, DNA, and the barcode of life
    • Stoeckle, M. (2003): "Taxonomy, DNA, and the barcode of life," Bioscience, 53, 2-3.
    • (2003) Bioscience , vol.53 , pp. 2-3
    • Stoeckle, M.1
  • 28
    • 0024114801 scopus 로고
    • A note on the neighbor-joining algorithm of Saitou and Nei
    • Studier, J. and K. Keppler (1988): "A note on the neighbor-joining algorithm of Saitou and Nei," Mole. Biol. Evol., 5, 729-731.
    • (1988) Mole. Biol. Evol. , vol.5 , pp. 729-731
    • Studier, J.1    Keppler, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.