메뉴 건너뛰기




Volumn 2, Issue 1, 2014, Pages 58-63

Identification and validation of loss of function variants in clinical contexts

Author keywords

GATK; Pipelines; Sequencing; Variant calling

Indexed keywords


EID: 84907700204     PISSN: None     EISSN: 23249269     Source Type: Journal    
DOI: 10.1002/mgg3.42     Document Type: Article
Times cited : (12)

References (12)
  • 1
    • 84860564877 scopus 로고    scopus 로고
    • Whole-exome sequencing and homozygosity analysis implicate depolarizationregulated neuronal genes in autism
    • Chahrour, M. H., T. W. Yu, E. T. Lim, B. Ataman, M. E. Coulter, R. S. Hill, et al. 2012. Whole-exome sequencing and homozygosity analysis implicate depolarizationregulated neuronal genes in autism. PLoS Genet. 8: e1002635.
    • (2012) Plos Genet , vol.8
    • Chahrour, M.H.1    Yu, T.W.2    Lim, E.T.3    Ataman, B.4    Coulter, M.E.5    Hill, R.S.6
  • 2
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation DNA sequencing data
    • DePristo, M. A., E. Banks, R. Poplin, K. V. Garimella, J. R. Maguire, C. Hartl, et al. 2011. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet. 43:491–498.
    • (2011) Nat. Genet , vol.43 , pp. 491-498
    • Depristo, M.A.1    Banks, E.2    Poplin, R.3    Garimella, K.V.4    Maguire, J.R.5    Hartl, C.6
  • 4
    • 84865530942 scopus 로고    scopus 로고
    • Vat: A computational framework to functionally annotate variants in personal genomes within a cloud-computing environment
    • Habegger, L., S. Balasubramanian, D. Z. Chen, E. Khurana, A. Sboner, A. Harmanci, et al. 2012. Vat: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment. Bioinformatics 28:2267–2269.
    • (2012) Bioinformatics , vol.28 , pp. 2267-2269
    • Habegger, L.1    Balasubramanian, S.2    Chen, D.Z.3    Khurana, E.4    Sboner, A.5    Harmanci, A.6
  • 5
    • 79953825909 scopus 로고    scopus 로고
    • Revisiting mendelian disorders through exome sequencing
    • Ku, C.-S., N. Naidoo, and Y. Pawitan. 2011. Revisiting mendelian disorders through exome sequencing. Hum. Genet. 129:351–370.
    • (2011) Hum. Genet , vol.129 , pp. 351-370
    • Ku, C.-S.1    Naidoo, N.2    Pawitan, Y.3
  • 7
    • 78650895972 scopus 로고    scopus 로고
    • Loss-of-function variants in the genomes of healthy humans
    • Macarthur, D. G., and C. Tyler-Smith. 2010. Loss-of-function variants in the genomes of healthy humans. Hum. Mol. Genet. 19:R125–R130.
    • (2010) Hum. Mol. Genet , vol.19
    • Macarthur, D.G.1    Tyler-Smith, C.2
  • 8
  • 10
    • 84875312984 scopus 로고    scopus 로고
    • Low concordance of multiple variant-calling pipelines: Practical implications for exome and genome sequencing
    • O’Rawe, J., S. Guangqing, W. Wang, J. Hu, P. Bodily, L. Tian, et al. 2013. Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing. Genome Med. 5:28.
    • (2013) Genome Med , vol.5 , pp. 28
    • O’Rawe, J.1    Guangqing, S.2    Wang, W.3    Hu, J.4    Bodily, P.5    Tian, L.6
  • 11
    • 84871227763 scopus 로고    scopus 로고
    • Lofreq: A sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
    • Wilm, A., P. P. K. Aw, D. Bertrand, G. H. T. Yeo, S. H. Ong, C. H. Wong, et al. 2012. Lofreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets. Nucleic Acids Res. 40:11189–11201.
    • (2012) Nucleic Acids Res , vol.40 , pp. 11189-11201
    • Wilm, A.1    Aw, P.P.K.2    Bertrand, D.3    Yeo, G.H.T.4    Ong, S.H.5    Wong, C.H.6
  • 12
    • 84871726922 scopus 로고    scopus 로고
    • Exome capture sequencing of adenoma reveals genetic alterations in multiple cellular pathways at the early stage of colorectal tumorigenesis
    • Zhou, D., L. Yang, L. Zheng, W. Ge, D. Li, Y. Zhang, et al. 2013. Exome capture sequencing of adenoma reveals genetic alterations in multiple cellular pathways at the early stage of colorectal tumorigenesis. PLoS ONE 8:e53310.
    • (2013) Plos ONE , vol.8
    • Zhou, D.1    Yang, L.2    Zheng, L.3    Ge, W.4    Li, D.5    Zhang, Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.