Colonization on root surface by a phenanthrene-degrading endophytic bacterium and its application for reducing plant phenanthrene contamination

PLoS ONE

Volumn 9, Issue 9, 2014, Pages

  Liu, Juan ^a   Liu, Shuang ^a   Sun, Kai ^a   Sheng, Yuehui ^a   Gu, Yujun ^a   Gao, Yanzheng ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ACENAPHTHENE; AMPICILLIN; ANTHRACENE; BENZO[A]PYRENE; CHLORAMPHENICOL; NAPHTHALENE; PHENANTHRENE; POLYCYCLIC AROMATIC HYDROCARBON; PYRENE; RNA 16S; UNCLASSIFIED DRUG; PHENANTHRENE DERIVATIVE; SOIL POLLUTANT;

ALOPECURUS; ALOPECURUS AEQUALIS; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL COLONIZATION; BACTERIAL STRAIN; BACTERIAL TRANSLOCATION; BACTERIUM; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CONCENTRATION (PARAMETERS); CONTAMINATION; CONTROLLED STUDY; CULTURE MEDIUM; GENE SEQUENCE; GENE STRUCTURE; LOLIUM MULTIFLORUM; MASSILIA; MINIMAL SALT MEDIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENANTHRENE DEGRADING ENDOPHYTIC BACTERIUM; PLANT GROWTH; PLANT ROOT; PLANT TISSUE; POLLUTION; SHOOT; GENETICS; ISOLATION AND PURIFICATION; LOLIUM; METABOLISM; MICROBIOLOGY; POACEAE; PROTEOBACTERIA; SOIL POLLUTANT;

BACTERIA (MICROORGANISMS);

LOLIUM; PHENANTHRENES; PLANT ROOTS; PLANT SHOOTS; POACEAE; PROTEOBACTERIA; RNA, RIBOSOMAL, 16S; SOIL POLLUTANTS;

EID: 84907588657     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0108249     Document Type: Article

References (58)

1. Wu N, Zhang S, Huang H, Shan X, Christie P, et al. (2008) DDT uptake by arbuscular mycorrhizal alfalfa and depletion in soil as influenced by soil application of a non-ionic surfactant. Environ Pollut 151: 569-575.
2. Gao Y, Zhu L, Ling W (2005) Application of the partition-limited model for plant uptake of organic chemicals from soil and water. Sci Total Environ 336: 171-182.
3. Voutsa D, Samara C (1998) Dietary intake of trace elements and polycyclic aromatic hydrocarbons via vegetables grown in an industrial Greek area. Sci Total Environ 218: 203-216.
4. Jiao XC, Xu FL, Dawson R, Chen SH, Tao S (2007) Adsorption and absorption of polycyclic aromatic hydrocarbons to rice roots. Environ Pollut 148: 230-235.
5. Wu Y, Teng Y, Li Z, Liao X, Luo Y (2008) Potential role of polycyclic aromatic hydrocarbons (PAHs) oxidation by fungal laccase in the remediation of an aged contaminated soil. Soil Biol Biochem 40: 789-796.
6. Zhan XH, Ma HL, Zhou LX, Liang JR, Jiang TH, et al. (2010) Accumulation of phenanthrene by roots of intact wheat (Triticum acstivnm L.) seedlings: passive or active uptake? BMC Plant Biol 10: 52.
7. Zhu L, Chen Y, Zhou R (2008) Distribution of polycyclic aromatic hydrocarbons in water, sediment and soil in drinking water resource of Zhejiang Province, China. J Hazard Mater 150: 308-316.
8. Kipopoulou AM, Manoli E, Samara C (1999) Bioconcentration of polycyclic aromatic hydrocarbons in vegetables grown in an industrial area. Environ Pollut 106: 369-380.
9. Jacob J (1996) The significance of polycyclic aromatic hydrocarbons as environmental carcinogens. Pure Appl Chem 68: 301-308.
10. Chris Collins MF, Grosso A (2006) Plant uptake of non-ionic organic chemicals. Environ Sci Technol 40: 45-52.
11. Gao Y, Ling W, Wong MH (2006) Plant-accelerated dissipation of phenanthrene and pyrene from water in the presence of a nonionic-surfactant. Chemosphere 63: 1560-1567.
12. Gao Y, Shen Q, Ling W, Ren L (2008) Uptake of polycyclic aromatic hydrocarbons by Trifolium pretense L. from water in the presence of a nonionic surfactant. Chemosphere 72: 636-643.
13. Gao Y, Li H, Gong S (2012) Ascorbic acid enhances the accumulation of polycyclic aromatic hydrocarbons (PAHs) in roots of tall fescue (Festuca arundinacea Schreb.). PLoS ONE 7: e50467.
14. Sheng X, Chen X, He L (2008) Characteristics of an endophytic pyrenedegrading bacterium of Enterobacter sp. 12J1 from Allium macrostemon Bunge. Int Biodeter Biodegr 62: 88-95.
15. Harish S, Kavino M, Kumar N, Saravanakumara D, Soorianathasundaramb K, et al. (2008) Biohardening with plant growth promoting rhizosphere and endophytic bacteria induces systemic resistance against banana bunchy top virus. Appl Soil Ecol 39 (2): 187-200.
16. Ryan RP, Germaine K, Franks A, Ryan DJ, Dowling DN (2008) Bacterial endophytes: recent developments and applications. FEMS Microbiol Lett 278: 1-9.
17. Bandara WM, Seneviratne G, Kulasooriya SA (2006) Interactions among endophytic bacteria and fungi: effects and potentials. J Biosci 31: 645-650.
18. Germaine KJ, Keogh E, Ryan D, Dowling DN (2009) Bacterial endophytemediated naphthalene phytoprotection and phytoremediation. FEMS Microbiol Lett 296: 226-234.
19. Mastretta C, Barac T, Vangronsveld J, Newman L, Taghavi S, et al. (2006) Endophytic bacteria and their potential application to improve the phytoremediation of contaminated environments. Biotechnol Genet Eng 23: 175-188.
20. Newman LA, Reynolds CM (2005) Bacteria and phytoremediation: new uses for endophytic bacteria in plants. Trends Biotechnol 23: 6-8.
21. Germaine KJ, Cabellos GG, Hogan JP, Ryan D, Dowling DN (2006) Bacterial endophyte-enhanced phytoremediation of the organochlorine herbicide 2,4-dichlorophenoxyacetic acid. FEMS Microbiol Ecol: 302-310.
22. Dong RB, Xu DF, Liu LD (1999) Behavior of PAHs in the environment. Environ Dev (in Chinese) 14: 10-11.
23. Tao S, Cui YH, Xu FL, Li BG, Cao J, et al. (2004) Polycyclic aromatic hydrocarbons (PAHs) in agricultural soil and vegetables from Tianjin. Sci Total Environ 320: 11-24.
24. Yaws CL (1999) Chemical properties handbook. New York, McGraw-Hill, pp, 340-389.
25. Sun K, Liu J, Jin L, Gao Y (2014) Utilizing pyrene-degrading endophytic bacteria to reduce the risk of plant pyrene contamination. Plant Soil 374: 251-262.
26. Gao Y, Zhang Y, Liu J, Kong H (2013) Metabolism and subcellular distribution of anthracene in tall fescue (Festuca arundinacea Schreb.). Plant Soil 365: 171-182.
27. Peng AP, Liu J, Gao YZ, Chen ZY (2013) Distribution of endophytic bacteria in Alopecurus aequalis Sobol and Oxalis corniculata L. from soils contaminated by polycyclic aromatic hydrocarbons. PLoS ONE 8(12): e83054.
28. Li J, Liu J, Shen W, Zhao X, Hou Y, et al. (2010) Isolation and characterization of 3,5,6-trichloro-2-pyridinol-degrading Ralstonia sp. strain T6. Bioresour Technol 101: 7479-7483.
29. Zhang J, Zhang X, Liu J, Li R, Shen B (2012) Isolation of a thermophilic bacterium, Geobacillus sp. SH-1, capable of degrading aliphatic hydrocarbons and naphthalene simultaneously, and identification of its naphthalene degrading pathway. Bioresour Technol 124: 83-89.
30. Ghosal D, Dutta A, Chakraborty J, Basu S, Dutta TK (2013) Characterization of the metabolic pathway involved in assimilation of acenaphthene in Acinetobacter sp. strain AGAT-W. Res Microbiol 164: 155-163.
31. Jacques RJS, Santos EC, Bento FM, Peralba MCR, Selbach PA, et al. (2005) Anthracene biodegradation by Pseudomonas sp. isolated from a petrochemical sludge landfarming site. Int Biodeter Biodegr 56: 143-150.
32. Moody JD, Freeman JP, Fu PP, Cerniglia CE (2004) Degradation of Benzo[a]pyrene by Mycobacterium vanbaalenii PYR-1. Appl Environ Microbiol 70: 340-345.
33. Binet JMP, Leyval C (2000) Dissipation of 3-6-ring polycyclic aromatic hydrocarbons in the rhizosphere of ryegrass. Soil Biol Biochem 32: 2011-2017.
34. Child R, Miller CD, Liang Y, Narasimham G, Chatterton J, et al. (2007) Polycyclic aromatic hydrocarbon-degrading Mycobacterium isolates: their association with plant roots. Appl Microbiol Biotechnol 75: 655-663.
35. Gao Y, Zhu L (2004) Plant uptake, accumulation and translocation of phenanthrene and pyrene in soils. Chemosphere 55: 1169-1178.
36. Andreolli M, Lampis S, Poli M, Gullner G, Biró B, et al. (2013) Endophytic Burkholderia fungorum DBT1 can improve phytoremediation efficiency of polycyclic aromatic hydrocarbons. Chemosphere 92: 688-694.
37. Toledo FL, Calvo C, Rodelas B, Gonzalez-Lopez J (2006) Selection and identification of bacteria isolated from waste crude oil with polycyclic aromatic hydrocarbons removal capacities. Syst Appl Microbiol 29: 244-252.
38. Samanta AKC, Jain RK (1999) Degradation of phenanthrene by different bacteria evidence for novel transformation sequences involving the formation of 1-naphthol. Appl Microbiol Biotechnol 53: 98-107.
39. Kang H, Hwang SY, Kim YM, Kim E, Kim YS, et al. (2003) Degradation of phenanthrene and naphthalene by a Burkholderia species strain. Can J Microbiol 49: 139-144.
40. Romero MCC, Giorgieri S, Arambarri AM (1998) Phenanthrene degradation by microorganisms isolated from a contaminated stream. Environ Pollut 101: 355-359.
41. Yamazoe A, Yagi O, Oyaizu H (2004) Degradation of polycyclic aromatic hydrocarbons by a newly isolated dibenzofuran-utilizing Janibacter sp. strain YY-1. Appl Microbiol Biotechnol 65: 211-218.
42. Moody JD, Freeman JP, Doerge DR, Cerniglia CE (2001) Degradation of phenanthrene and anthracene by cell suspensions of Mycobacterium sp. strain PYR-1. Appl Environ Microbiol 67: 1476-1483.
43. Mallick S, Chatterjee S, Dutta TK (2007) A novel degradation pathway in the assimilation of phenanthrene by Staphylococcus sp. strain PN/Y via metacleavage of 2-hydroxy-1-naphthoic acid: formation of trans-2,3-dioxo-5-(2-hydroxyphenyl)-pent-4-enoic acid. Microbiology 153: 2104-2115.
44. Bodour AA, Wang JM, Brusseau ML, Maier RM (2003) Temporal change in culturable phenanthrene degraders in response to long-term exposure to phenanthrene in a soil column system. Environ Microbiol 5: 888-895.
45. Zhang W, Wang H, Zhang R, Yu XZ, Qian PY, et al. (2010) Bacterial communities in PAH contaminated soils at an electronic-waste processing center in China. Ecotoxicology 19: 96-104.
46. Liu L, Jiang CY, Liu XY, Wu JF, Han JG, et al. (2007) Plant-microbe association for rhizoremediation of chloronitroaromatic pollutants with Comamonas sp. strain CNB-1. Environ Microbiol 9: 465-473.
47. Compant S, Clément C, Sessitsch A (2010) Plant growth-promoting bacteria in the rhizo-and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization. Soil Biol Biochem 42: 669-678.
48. Weyens N, van der Lelie D, Taghavi S, Newman L, Vangronsveld J (2009) Exploiting plant-microbe partnerships to improve biomass production and remediation. Trends Biotechnol 27: 591-598.
49. Malfanova N, Kamilova F, Validov S, Shcherbakov A, Chebotar V, et al. (2011) Characterization of Bacillus subtilis HC8, a novel plant-beneficial endophytic strain from giant hogweed. Microb Biotechnol 4(4): 523-532.
50. Jha PN, Gupta G, Jha P, Mehrotra R (2013) Association of rhizospheric/ endophytic bacteria with plants: a potential gateway to sustainable agriculture. Greener J Agri Sci 3 (2): 73-84.
51. Sgroy V, Cassán F, Masciarelli O, Papa MFD, Lagares A, et al. (2009) Isolation and characterization of endophytic plant growth-promoting (PGPB) or stress homeostasis-regulating (PSHB) bacteria associated to the halophyte Prosopis strombulifera. Appl Microbiol Biotechnol 85: 371-381.
52. MaY, Prasad MNV, Rajkumar M, Freitas H (2011) Plant growth promoting rhizobacteria and endophytes accelerate phytoremediation of metalliferous soils. Biotechnol Adv 29: 248-258.
53. Reinhold-Hurek B, Hurek T (2011) Living inside plants: bacterial endophytes. Curr Opin Plant Biol 14: 435-443.
54. Weyens N, van der Lelie D, Taghavi S, Vangronsveld J (2009) Phytoremediation: plant-endophyte partnerships take the challenge. Curr Opin Biotechnol 20: 248-254.
55. Siciliano SD, Fortin N, Mihoc A, Wisse G, Labelle S, et al. (2001) Selection of specific endophytic bacterial genotypes by plants in response to soil contamination. Appl Environ Microbiol 67: 2469-2475.
56. Taghavi S, Barac T, Greenberg B, Borremans B, Vangronsveld J, et al. (2005) Horizontal gene transfer to endogenous endophytic bacteria from poplar improves phytoremediation of toluene. Appl Environ Microbiol 71: 8500-8505.
57. Kvesitadze TS, Kvesitadze G (2009) Mechanisms of organic contaminants uptake and degradation in plants. WASET 55: 458-468.
58. Nele Weyens DVDL, Artois T, Smeets K, Taghavi S, Newman L, et al. (2009) Bioaugmentation with engineered endophytic bacteria improves contaminant fate in phytoremediation. Environ Sci Technol 43: 9413-9418.