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Volumn 30, Issue 18, 2014, Pages 2656-2658

Tedna: A transposable element de novo assembler

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; DNA SEQUENCE; GENETICS; GENOMICS; METHODOLOGY; NUCLEOTIDE REPEAT; TRANSPOSON; WHEAT;

EID: 84907546045     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu365     Document Type: Article
Times cited : (31)

References (10)
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    • Fedoroff, N.1
  • 2
    • 79551624472 scopus 로고    scopus 로고
    • Considering transposable element diversification in de novo annotation approaches
    • Flutre, T. et al. (2011a) Considering transposable element diversification in de novo annotation approaches. PLoS One, 6, e16526.
    • (2011) PLoS One , vol.6 , pp. e16526
    • Flutre, T.1
  • 3
    • 84880850873 scopus 로고    scopus 로고
    • In search of lost trajectories: Recovering the diversification of transposable elements
    • Flutre, T. et al. (2011b) In search of lost trajectories: recovering the diversification of transposable elements. Mob. Genet. Elements, 1, 151-154.
    • (2011) Mob. Genet. Elements , vol.1 , pp. 151-154
    • Flutre, T.1
  • 4
    • 23844525077 scopus 로고    scopus 로고
    • Repbase Update, a database of eukaryotic repetitive elements
    • Jurka, J. et al. (2005) Repbase Update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res., 110, 462-467.
    • (2005) Cytogenet. Genome Res. , vol.110 , pp. 462-467
    • Jurka, J.1
  • 5
    • 55449118548 scopus 로고    scopus 로고
    • ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun
    • Li, R. et al. (2005) ReAS: recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun. PLoS Comput. Biol., 1, e43.
    • (2005) PLoS Comput. Biol. , vol.1 , pp. e43
    • Li, R.1
  • 6
    • 77954854627 scopus 로고    scopus 로고
    • Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
    • Novak, P. et al. (2010) Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data. BMC Bioinformatics, 11, 378.
    • (2010) BMC Bioinformatics , vol.11 , pp. 378
    • Novak, P.1
  • 7
    • 84875165671 scopus 로고    scopus 로고
    • RepeatExplorer: A Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
    • Novak, P. et al. (2013) RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads. Bioinformatics, 29, 792-793.
    • (2013) Bioinformatics , vol.29 , pp. 792-793
    • Novak, P.1
  • 8
    • 4644275238 scopus 로고    scopus 로고
    • De novo repeat classification and fragment assembly
    • Pevzner, P.A. et al. (2004) De novo repeat classification and fragment assembly. Genome Res., 14, 1786-1796.
    • (2004) Genome Res. , vol.14 , pp. 1786-1796
    • Pevzner, P.A.1
  • 9
    • 84859768479 scopus 로고    scopus 로고
    • Oases: Robust de novo RNA-seq assembly across the dynamic range of expression levels
    • Schulz, M.H. et al. (2012) Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. Bioinformatics, 28, 1086-1092.
    • (2012) Bioinformatics , vol.28 , pp. 1086-1092
    • Schulz, M.H.1
  • 10
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino, D.R. and Birney, E. (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res., 18, 821-829.
    • (2008) Genome Res. , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.