-
1
-
-
84878953434
-
Communication of genome regulatory elements in a folded chromosome
-
Razin, S. V., Gavrilov, A. A., Ioudinkova, E. S., and Iarovaia, O. V. (2013) Communication of genome regulatory elements in a folded chromosome. FEES Lett. 587,1840-1847
-
(2013)
FEES Lett.
, vol.587
, pp. 1840-1847
-
-
Razin, S.V.1
Gavrilov, A.A.2
Ioudinkova, E.S.3
Iarovaia, O.V.4
-
2
-
-
84877656114
-
Chromatin structure, pluripotency and differentiation
-
Serrano, L., Vazquez, B. N., and Tischfield, J. (2013) Chromatin structure, pluripotency and differentiation. Exp. Biol. Med. (Maywood) 238, 259-270
-
(2013)
Exp. Biol. Med. (Maywood)
, vol.238
, pp. 259-270
-
-
Serrano, L.1
Vazquez, B.N.2
Tischfield, J.3
-
3
-
-
84875537133
-
Epigenetic reprogramming in cancer
-
Suvà, M. L, Riggi, N., and Bernstein, B. E. (2013) Epigenetic reprogramming in cancer. Science 339,1567-1570
-
(2013)
Science
, vol.339
, pp. 1567-1570
-
-
Suvà, M.L.1
Riggi, N.2
Bernstein, B.E.3
-
4
-
-
11144339384
-
Long-range control of gene expression: Emerging mechanisms and disruption in disease
-
Kleinjan, D. A., and van Heyningen, V. (2005) Long-range control of gene expression: emerging mechanisms and disruption in disease. Am.J. Hum. Genet. 76, 8 -32
-
(2005)
Am.J. Hum. Genet.
, vol.76
, pp. 8-32
-
-
Kleinjan, D.A.1
Van Heyningen, V.2
-
5
-
-
0026758357
-
A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition
-
Dickinson, L. A., Joh, T., Kohwi, Y., and Kohwi-Shigematsu, T. (1992) A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition. Cell 70, 631-645
-
(1992)
Cell
, vol.70
, pp. 631-645
-
-
Dickinson, L.A.1
Joh, T.2
Kohwi, Y.3
Kohwi-Shigematsu, T.4
-
6
-
-
0034161939
-
The MAR-binding protein SATB1 orchestrates temporal and spatial expression of multiple genes during T-cell development
-
Alvarez, J. D., Yasui, D. H., Niida, H., Joh, T., Loh, D. Y., and KohwiShigematsu, T. (2000) The MAR-binding protein SATB1 orchestrates temporal and spatial expression of multiple genes during T-cell development. Genes Dev. 14, 521-535
-
(2000)
Genes Dev.
, vol.14
, pp. 521-535
-
-
Alvarez, J.D.1
Yasui, D.H.2
Niida, H.3
Joh, T.4
Loh, D.Y.5
KohwiShigematsu, T.6
-
7
-
-
75749152053
-
Global regulator SATB1 recruits β-catenin and regulates T(H)2 differentiation in Wnt-dependent manner
-
Notani, D., Gottimukkala, K. P., Jayani, R. S., Limaye, A. S., Damle, M. V., Mehta, S., Purbey, P. K., Joseph, J., and Galande, S. (2010) Global regulator SATB1 recruits β-catenin and regulates T(H)2 differentiation in Wnt-dependent manner. PLoS Biol. 8, el000296
-
(2010)
PLoS Biol.
, vol.8
, pp. el000296
-
-
Notani, D.1
Gottimukkala, K.P.2
Jayani, R.S.3
Limaye, A.S.4
Damle, M.V.5
Mehta, S.6
Purbey, P.K.7
Joseph, J.8
Galande, S.9
-
8
-
-
77956534729
-
SATB1 dictates expression of multiple genes including IL-5 involved in human T helper cell differentiation
-
Ahlfors, H., Limaye, A., Elo, L. L., Tuomela, S., Burute, M., Gottimukkala, K. V., Notani, D., Rasool, O., Galande, S., and Lahesmaa, R. (2010) SATB1 dictates expression of multiple genes including IL-5 involved in human T helper cell differentiation. Blood 116,1443-1453
-
(2010)
Blood
, vol.116
, pp. 1443-1453
-
-
Ahlfors, H.1
Limaye, A.2
Elo, L.L.3
Tuomela, S.4
Burute, M.5
Gottimukkala, K.V.6
Notani, D.7
Rasool, O.8
Galande, S.9
Lahesmaa, R.10
-
9
-
-
0038369968
-
Tissue-specific nuclear architecture and gene expression regulated by SATB1
-
Cai, S., Han, H. J., and Kohwi-Shigematsu, T. (2003) Tissue-specific nuclear architecture and gene expression regulated by SATB1. Nat. Genet. 34, 42-51
-
(2003)
Nat. Genet.
, vol.34
, pp. 42-51
-
-
Cai, S.1
Han, H.J.2
Kohwi-Shigematsu, T.3
-
10
-
-
0026597313
-
Biological significance of unwinding capability of nuclear matrix-associating DNAs
-
Bode, J., Kohwi, Y., Dickinson, L., Joh, T., Klehr, D., Mielke, C., and KohwiShigematsu, T. (1992) Biological significance of unwinding capability of nuclear matrix-associating DNAs. Science 255,195-197
-
(1992)
Science
, vol.255
, pp. 195-197
-
-
Bode, J.1
Kohwi, Y.2
Dickinson, L.3
Joh, T.4
Klehr, D.5
Mielke, C.6
KohwiShigematsu, T.7
-
11
-
-
0037057668
-
SATB1 targets chromatin remodelling to regulate genes over long distances
-
Yasui, D., Miyano, M., Cai, S., Varga-Weisz, P., and Kohwi-Shigematsu, T. (2002) SATB1 targets chromatin remodelling to regulate genes over long distances. Nature 419, 641-645
-
(2002)
Nature
, vol.419
, pp. 641-645
-
-
Yasui, D.1
Miyano, M.2
Cai, S.3
Varga-Weisz, P.4
Kohwi-Shigematsu, T.5
-
12
-
-
33750465872
-
SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes
-
Cai, S., Lee, C. C., and Kohwi-Shigematsu, T. (2006) SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes. Nat. Genet. 38,1278-1288
-
(2006)
Nat. Genet.
, vol.38
, pp. 1278-1288
-
-
Cai, S.1
Lee, C.C.2
Kohwi-Shigematsu, T.3
-
13
-
-
33845871732
-
Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus
-
Kumar, P. P., Bischof, O., Purbey, P. K., Notani, D., Urlaub, H., Dejean, A., and Galande, S. (2007) Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus. Nat. Cell Biol. 9, 45-56
-
(2007)
Nat. Cell Biol.
, vol.9
, pp. 45-56
-
-
Kumar, P.P.1
Bischof, O.2
Purbey, P.K.3
Notani, D.4
Urlaub, H.5
Dejean, A.6
Galande, S.7
-
14
-
-
61749083541
-
Acetylation-dependent interaction of SATB1 and CtBP1 mediates transcriptional repression by SATB1
-
Purbey, P. K., Singh, S., Notani, D., Kumar, P. P., Limaye, A. S., and Galande, S. (2009) Acetylation-dependent interaction of SATB1 and CtBP1 mediates transcriptional repression by SATB1. Mol. Cell Biol. 29, 1321-1337
-
(2009)
Mol. Cell Biol.
, vol.29
, pp. 1321-1337
-
-
Purbey, P.K.1
Singh, S.2
Notani, D.3
Kumar, P.P.4
Limaye, A.S.5
Galande, S.6
-
15
-
-
14044266330
-
Displacement of SATB1-bound histone deacetylase 1 corepressor by the human immunodeficiency virus type 1 transactivator induces expression of interleukin-2 and its receptor in T cells
-
Kumar, P. P., Purbey, P. K., Ravi, D. S., Mitra, D., and Galande, S. (2005) Displacement of SATB1-bound histone deacetylase 1 corepressor by the human immunodeficiency virus type 1 transactivator induces expression of interleukin-2 and its receptor in T cells. Mol. Cell Biol. 25,1620 -1633
-
(2005)
Mol. Cell Biol.
, vol.25
, pp. 1620-1633
-
-
Kumar, P.P.1
Purbey, P.K.2
Ravi, D.S.3
Mitra, D.4
Galande, S.5
-
16
-
-
79959469938
-
The BCL2 gene is regulated by a special AT-rich sequence binding protein 1-mediated long range chromosomal interaction between the promoter and the distal element located within the 3' -UTR
-
Gong, F., Sun, L., Wang, Z., Shi, J., Li, W., Wang, S., Han, X., and Sun, Y. (2011) The BCL2 gene is regulated by a special AT-rich sequence binding protein 1-mediated long range chromosomal interaction between the promoter and the distal element located within the 3' -UTR. Nucleic Acids Res. 39, 4640-4652
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 4640-4652
-
-
Gong, F.1
Sun, L.2
Wang, Z.3
Shi, J.4
Li, W.5
Wang, S.6
Han, X.7
Sun, Y.8
-
17
-
-
35648954086
-
The third dimension of gene regulation: Organization of dynamic chromatin loopscape by SATB1
-
Galande, S., Purbey, P. K., Notani, D., and Kumar, P. P. (2007) The third dimension of gene regulation: organization of dynamic chromatin loopscape by SATB1. Curr. Opin. Genet. Dev. 17, 408-414
-
(2007)
Curr. Opin. Genet. Dev.
, vol.17
, pp. 408-414
-
-
Galande, S.1
Purbey, P.K.2
Notani, D.3
Kumar, P.P.4
-
18
-
-
40749094918
-
SATB1 reprogrammes gene expression to promote breast tumour growth and metastasis
-
Han, H. J., Russo, J., Kohwi, Y., and Kohwi-Shigematsu, T. (2008) SATB1 reprogrammes gene expression to promote breast tumour growth and metastasis. Nature 452,187-193
-
(2008)
Nature
, vol.452
, pp. 187-193
-
-
Han, H.J.1
Russo, J.2
Kohwi, Y.3
Kohwi-Shigematsu, T.4
-
19
-
-
84863512872
-
Upregulation of SATB1 promotes tumor growth and metastasis in liver cancer
-
Tu, W., Luo, M., Wang, Z., Yan, W., Xia, Y., Deng, H., He, J., Han, P., and Tian, D. (2012) Upregulation of SATB1 promotes tumor growth and metastasis in liver cancer. Liverint. 32,1064-1078
-
(2012)
Liverint.
, vol.32
, pp. 1064-1078
-
-
Tu, W.1
Luo, M.2
Wang, Z.3
Yan, W.4
Xia, Y.5
Deng, H.6
He, J.7
Han, P.8
Tian, D.9
-
20
-
-
84885432245
-
Expression and biological roles of SATB1 in human bladder cancer
-
Han, B., Luan, L., Xu, Z., and Wu, B. (2013) Expression and biological roles of SATB1 in human bladder cancer. Tumour Biol. 34, 2943-2949
-
(2013)
Tumour Biol.
, vol.34
, pp. 2943-2949
-
-
Han, B.1
Luan, L.2
Xu, Z.3
Wu, B.4
-
21
-
-
33646490450
-
Phosphorylation of SATB1, a global gene regulator, acts as a molecular switch regulating its transcriptional activity in vivo
-
Pavan Kumar, P., Purbey, P. K., Sinha, C. K., Notani, D., Limaye, A., Jayani, R. S., and Galande, S. (2006) Phosphorylation of SATB1, a global gene regulator, acts as a molecular switch regulating its transcriptional activity in vivo. Mol. Cell 22, 231-243
-
(2006)
Mol. Cell
, vol.22
, pp. 231-243
-
-
Pavan Kumar, P.1
Purbey, P.K.2
Sinha, C.K.3
Notani, D.4
Limaye, A.5
Jayani, R.S.6
Galande, S.7
-
22
-
-
49649100923
-
SUMO conjugation to the matrix attachment region-binding protein, special AT-rich sequence-binding protein-1 (SATB1), targets SATB1 to promyelocytic nuclear bodies where it undergoes caspase cleavage
-
Tan, J. A., Sun, Y., Song, J., Chen, Y., Krontiris, T. G., and Durrin, L. K. (2008) SUMO conjugation to the matrix attachment region-binding protein, special AT-rich sequence-binding protein-1 (SATB1), targets SATB1 to promyelocytic nuclear bodies where it undergoes caspase cleavage.J. Biol. Chem. 283,18124-18134
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 18124-18134
-
-
Tan, J.A.1
Sun, Y.2
Song, J.3
Chen, Y.4
Krontiris, T.G.5
Durrin, L.K.6
-
23
-
-
77952650673
-
Phosphorylation-dependent interaction of SATB1 and PIAS1 directs SUMO-regulated caspase cleavage of SATB1
-
Tan, J. A., Song, J., Chen, Y., and Durrin, L. K. (2010) Phosphorylation-dependent interaction of SATB1 and PIAS1 directs SUMO-regulated caspase cleavage of SATB1. Mol. Cell Biol. 30, 2823-2836
-
(2010)
Mol. Cell Biol.
, vol.30
, pp. 2823-2836
-
-
Tan, J.A.1
Song, J.2
Chen, Y.3
Durrin, L.K.4
-
24
-
-
84862233585
-
SIRTI deacetylates SATB1 to facilitate MAR HS2-MAR epsilon interaction and promote epsilon-globin expression
-
Xue, Z., Lv, X., Song, W., Wang, X., Zhao, G. N., Wang, W. T., Xiong, J., Mao, B. B., Yu, W., Yang, B., Wu, J., Zhou, L. Q., Hao, D. L, Dong, W. J., Liu, D. P., and Liang, C. C. (2012) SIRTI deacetylates SATB1 to facilitate MAR HS2-MAR epsilon interaction and promote epsilon-globin expression. Nucleic Acids Res. 40, 4804-4815
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4804-4815
-
-
Xue, Z.1
Lv, X.2
Song, W.3
Wang, X.4
Zhao, G.N.5
Wang, W.T.6
Xiong, J.7
Mao, B.B.8
Yu, W.9
Yang, B.10
Wu, J.11
Zhou, L.Q.12
Hao, D.L.13
Dong, W.J.14
Liu, D.P.15
Liang, C.C.16
-
25
-
-
84861406736
-
The structural basis for the oligomerization of the N-terminal domain of SATB1
-
Wang, Z., Yang, X., Chu, X., Zhang, J., Zhou, H., Shen, Y., and Long, J. (2012) The structural basis for the oligomerization of the N-terminal domain of SATB1. Nucleic Acids Res. 40, 4193-4202
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4193-4202
-
-
Wang, Z.1
Yang, X.2
Chu, X.3
Zhang, J.4
Zhou, H.5
Shen, Y.6
Long, J.7
-
26
-
-
0028219858
-
A novel DNA-binding motif in the nuclear matrix attachment DNA-binding protein SATB1
-
Nakagomi, K., Kohwi, Y., Dickinson, L. A., and Kohwi-Shigematsu, T. (1994) A novel DNA-binding motif in the nuclear matrix attachment DNA-binding protein SATB1. Mol. Cell Biol. 14,1852-1860
-
(1994)
Mol. Cell Biol.
, vol.14
, pp. 1852-1860
-
-
Nakagomi, K.1
Kohwi, Y.2
Dickinson, L.A.3
Kohwi-Shigematsu, T.4
-
27
-
-
0030977226
-
An atypical homeodomain in SATB1 promotes specific recognition of the key structural element in a matrix attachment region
-
Dickinson, L. A., Dickinson, C. D., and Kohwi-Shigematsu, T. (1997) An atypical homeodomain in SATB1 promotes specific recognition of the key structural element in a matrix attachment region. J. Biol. Chem. 272, 11463-11470
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 11463-11470
-
-
Dickinson, L.A.1
Dickinson, C.D.2
Kohwi-Shigematsu, T.3
-
28
-
-
34548599879
-
Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1
-
Yamasaki, K., Akiba, T., Yamasaki, T., and Harat a, K. (2007) Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1. Nucleic Acids Res. 35, 5073-5084
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 5073-5084
-
-
Yamasaki, K.1
Akiba, T.2
Yamasaki, T.3
-
29
-
-
0034928793
-
SATB1 cleavage by caspase 6 disrupts PDZ domainmediated dimerization, causing detachment from chromatin early in Tcell apoptosis
-
Galande, S., Dickinson, L. A., Mian, I. S., Sikorska, M., and Kohwi-Shigematsu, T. (2001) SATB1 cleavage by caspase 6 disrupts PDZ domainmediated dimerization, causing detachment from chromatin early in Tcell apoptosis. Mol. Cell Biol. 21, 5591-5604
-
(2001)
Mol. Cell Biol.
, vol.21
, pp. 5591-5604
-
-
Galande, S.1
Dickinson, L.A.2
Mian, I.S.3
Sikorska, M.4
Kohwi-Shigematsu, T.5
-
30
-
-
42449085407
-
PDZ domain-mediated dimerization and homeodomain-directed specificity are required for high-affinity DNA binding by SATB1
-
Purbey, P. K., Singh, S., Kumar, P. P., Mehta, S., Ganesh, K. N., Mitra, D., and Galande, S. (2008) PDZ domain-mediated dimerization and homeodomain-directed specificity are required for high-affinity DNA binding by SATB1. Nucleic Acids Res. 36, 2107-2122
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2107-2122
-
-
Purbey, P.K.1
Singh, S.2
Kumar, P.P.3
Mehta, S.4
Ganesh, K.N.5
Mitra, D.6
Galande, S.7
-
31
-
-
0034057614
-
The fate of the nuclear matrix-associated-region-binding protein SATB1 during apoptosis
-
Gotzmann, J., Meissner, M., and Gerner, C. (2000) The fate of the nuclear matrix-associated-region-binding protein SATB1 during apoptosis. Cell Death Differ. 7, 425-438
-
(2000)
Cell Death Differ.
, vol.7
, pp. 425-438
-
-
Gotzmann, J.1
Meissner, M.2
Gerner, C.3
-
32
-
-
33244469524
-
The behavior of SATB1, a MAR-binding protein, in response to apoptosis stimulation
-
Sun, Y., Wang, T., Su, Y., Yin, Y., Xu, S., Ma, C., and Han, X. (2006) The behavior of SATB1, a MAR-binding protein, in response to apoptosis stimulation. Cell Biol. Int. 30, 244-247
-
(2006)
Cell Biol. Int.
, vol.30
, pp. 244-247
-
-
Sun, Y.1
Wang, T.2
Su, Y.3
Yin, Y.4
Xu, S.5
Ma, C.6
Han, X.7
-
33
-
-
0031059866
-
Processing of x-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of x-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
34
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., and Read, R. J. (2007) Phaser crystallographic software. J. Appl. Crystallogr. 40, 658 - 674
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
35
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K. (2010) Features and development of Coot. Acta Crystallogr. D Biol. Crystallogr. 66, 486-501
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
36
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L. W., Kapral, G. J., Grosse-Kunstleve, R. W., McCoy, A. J., Moriarty, N. W., Oeffner, R., Read, R. J., Richardson, D. C., Richardson, J. S., Terwilliger, T. C., and Zwart, P. H. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 66, 213-221
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
37
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
38
-
-
0034009520
-
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling
-
Schuck, P. (2000) Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling. Biophys. J. 78,1606-1619
-
(2000)
Biophys. J.
, vol.78
, pp. 1606-1619
-
-
Schuck, P.1
-
39
-
-
0042855798
-
On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation
-
Schuck, P. (2003) On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation. Anal. Biochem. 320, 104-124
-
(2003)
Anal. Biochem.
, vol.320
, pp. 104-124
-
-
Schuck, P.1
-
40
-
-
0030025170
-
Oct-1 POU domain-DNA interactions: Cooperative binding of isolated subdomains and effects of covalent linkage
-
Klemm, J. D., and Pabo, C. O. (1996) Oct-1 POU domain-DNA interactions: cooperative binding of isolated subdomains and effects of covalent linkage. Genes Dev. 10, 27-36
-
(1996)
Genes Dev.
, vol.10
, pp. 27-36
-
-
Klemm, J.D.1
Pabo, C.O.2
|