메뉴 건너뛰기




Volumn 40, Issue 9, 2012, Pages 4193-4202

The structural basis for the oligomerization of the N-terminal domain of SATB1

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; SPECIAL AT RICH SEQUENCE BINDING PROTEIN 1; UNCLASSIFIED DRUG;

EID: 84861406736     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr1284     Document Type: Article
Times cited : (33)

References (37)
  • 1
    • 11144339384 scopus 로고    scopus 로고
    • Long-range control of gene expression: Emerging mechanisms and disruption in disease
    • DOI 10.1086/426833
    • Kleinjan, D.A. and van Heyningen, V. (2005) Long-range control of gene expression: Emerging mechanisms and disruption in disease. Am. J. Hum. Genet., 76, 8-32. (Pubitemid 40023762)
    • (2005) American Journal of Human Genetics , vol.76 , Issue.1 , pp. 8-32
    • Kleinjan, D.A.1    Van Heyningen, V.2
  • 2
    • 0042767995 scopus 로고    scopus 로고
    • The dynamics of chromosome organization and gene regulation
    • DOI 10.1146/annurev.biochem.72.121801.161724
    • Spector, D.L. (2003) The dynamics of chromosome organization and gene regulation. Annu. Rev. Biochem., 72, 573-608. (Pubitemid 36930454)
    • (2003) Annual Review of Biochemistry , vol.72 , pp. 573-608
    • Spector, D.L.1
  • 3
    • 0026758357 scopus 로고
    • A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition
    • Dickinson, L.A., Joh, T., Kohwi, Y. and Kohwi-Shigematsu, T. (1992) A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition. Cell, 70, 631-645.
    • (1992) Cell , vol.70 , pp. 631-645
    • Dickinson, L.A.1    Joh, T.2    Kohwi, Y.3    Kohwi-Shigematsu, T.4
  • 4
    • 0026597313 scopus 로고
    • Biological significance of unwinding capability of nuclear matrix-associating DNAs
    • Bode, J., Kohwi, Y., Dickinson, L., Joh, T., Klehr, D., Mielke, C. and Kohwi-Shigematsu, T. (1992) Biological significance of unwinding capability of nuclear matrix-associating DNAs. Science, 255, 195-197.
    • (1992) Science , vol.255 , pp. 195-197
    • Bode, J.1    Kohwi, Y.2    Dickinson, L.3    Joh, T.4    Klehr, D.5    Mielke, C.6    Kohwi-Shigematsu, T.7
  • 5
    • 17044363230 scopus 로고    scopus 로고
    • SATB1 family protein expressed during early erythroid differentiation modifies globin gene expression
    • Wen, J., Huang, S.M., Rogers, H., Dickinson, L.A., Kohwi-Shigematsu, T. and Noguchi, C.T. (2005) SATB1 family protein expressed during early erythroid differentiation modifies globin gene expression. Blood, 105, 3330-3339.
    • (2005) Blood , vol.105 , pp. 3330-3339
    • Wen, J.1    Huang, S.M.2    Rogers, H.3    Dickinson, L.A.4    Kohwi-Shigematsu, T.5    Noguchi, C.T.6
  • 6
    • 14044266330 scopus 로고    scopus 로고
    • Displacement of SATB1-bound histone deacetylase 1 corepressor by the human immunodeficiency virus type 1 transactivator induces expression of interleukin-2 and its receptor in T cells
    • DOI 10.1128/MCB.25.5.1620-1633.2005
    • Kumar, P.P., Purbey, P.K., Ravi, D.S., Mitra, D. and Galande, S. (2005) Displacement of SATB1-bound histone deacetylase 1 corepressor by the human immunodeficiency virus type 1 transactivator induces expression of interleukin-2 and its receptor in T cells. Mol. Cell. Biol., 25, 1620-1633. (Pubitemid 40280132)
    • (2005) Molecular and Cellular Biology , vol.25 , Issue.5 , pp. 1620-1633
    • Kumar, P.P.1    Purbey, P.K.2    Ravi, D.S.3    Mitra, D.4    Galande, S.5
  • 7
    • 61749083541 scopus 로고    scopus 로고
    • Acetylation-dependent interaction of SATB1 and CtBP1 mediates transcriptional repression by SATB1
    • Purbey, P.K., Singh, S., Notani, D., Kumar, P.P., Limaye, A.S. and Galande, S. (2009) Acetylation-dependent interaction of SATB1 and CtBP1 mediates transcriptional repression by SATB1. Mol. Cell. Biol., 29, 1321-1337.
    • (2009) Mol. Cell. Biol. , vol.29 , pp. 1321-1337
    • Purbey, P.K.1    Singh, S.2    Notani, D.3    Kumar, P.P.4    Limaye, A.S.5    Galande, S.6
  • 9
    • 0037057668 scopus 로고    scopus 로고
    • SATB1 targets chromatin remodelling to regulate genes over long distances
    • Yasui, D., Miyano, M., Cai, S.T., Varga-WEisz, P. and Kohwi-Shigematsu, T. (2002) SATB1 targets chromatin remodelling to regulate genes over long distances. Nature, 419, 641-645.
    • (2002) Nature , vol.419 , pp. 641-645
    • Yasui, D.1    Miyano, M.2    Cai, S.T.3    Varga-Weisz, P.4    Kohwi-Shigematsu, T.5
  • 10
    • 33750465872 scopus 로고    scopus 로고
    • SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes
    • DOI 10.1038/ng1913, PII NG1913
    • Cai, S.T., Lee, C.C. and Kohwi-Shigematsu, T. (2006) SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes. Nat. Genet., 38, 1278-1288. (Pubitemid 44646290)
    • (2006) Nature Genetics , vol.38 , Issue.11 , pp. 1278-1288
    • Cai, S.1    Lee, C.C.2    Kohwi-Shigematsu, T.3
  • 11
    • 33845871732 scopus 로고    scopus 로고
    • Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus
    • DOI 10.1038/ncb1516, PII NCB1516
    • Kumar, P., Bischof, O., Purbey, P.K., Notani, D., Urlaub, H., Dejean, A. and Galande, S. (2007) Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus. Nat. Cell. Biol., 9, 45-56. (Pubitemid 46024196)
    • (2007) Nature Cell Biology , vol.9 , Issue.1 , pp. 45-56
    • Pavan Kumar, P.1    Bischof, O.2    Purbey, P.K.3    Notani, D.4    Urlaub, H.5    Dejean, A.6    Galande, S.7
  • 12
    • 40749094918 scopus 로고    scopus 로고
    • SATB1 reprogrammes gene expression to promote breast tumour growth and metastasis
    • DOI 10.1038/nature06781, PII NATURE06781
    • Han, H.J., Russo, J., Kohwi, Y. and Kohwi-Shigematsu, T. (2008) SATB1 reprogrammes gene expression to promote breast tumour growth and metastasis. Nature, 452, 187-193. (Pubitemid 351380252)
    • (2008) Nature , vol.452 , Issue.7184 , pp. 187-193
    • Han, H.-J.1    Russo, J.2    Kohwi, Y.3    Kohwi-Shigematsu, T.4
  • 13
    • 0030977226 scopus 로고    scopus 로고
    • An atypical homeodomain in SATB1 promotes specific recognition of the key structural element in a matrix attachment region
    • DOI 10.1074/jbc.272.17.11463
    • Dickinson, L.A., Dickinson, C.D. and KohwiShigematsu, T. (1997) An atypical homeodomain in SATB1 promotes specific recognition of the key structural element in a matrix attachment region. J. Biol. Chem., 272, 11463-11470. (Pubitemid 27184155)
    • (1997) Journal of Biological Chemistry , vol.272 , Issue.17 , pp. 11463-11470
    • Dickinson, L.A.1    Dickinson, C.D.2    Kohwi-Shigematsu, T.3
  • 14
    • 0028219858 scopus 로고
    • A novel DNA-binding motif in the nuclear matrix attachment DNA-binding protein SATB1
    • Nakagomi, K., Kohwi, Y., Dickinson, L.A. and Kohwi-Shigematsu, T. (1994) A novel DNA-binding motif in the nuclear matrix attachment DNA-binding protein SATB1. Mol. Cell. Biol., 14, 1852-1860. (Pubitemid 24074580)
    • (1994) Molecular and Cellular Biology , vol.14 , Issue.3 , pp. 1852-1860
    • Nakagomi, K.1    Kohwi, Y.2    Dickinson, L.A.3    Kohwi-Shigematsu, T.4
  • 15
    • 0034928793 scopus 로고    scopus 로고
    • SATB1 cleavage by caspase 6 disrupts PDZ domain-mediated dimerization, causing detachment from chromatin early in T-cell apoptosis
    • DOI 10.1128/MCB.21.16.5591-5604.2001
    • Galande, S., Dickinson, L.A., Mian, I.S., Sikorska, M. and Kohwi-Shigematsu, T. (2001) SATB1 cleavage by caspase 6 disrupts PDZ domain-mediated dimerization, causing detachment from chromatin early in T-cell apoptosis. Mol. Cell. Biol., 21, 5591-5604. (Pubitemid 32702462)
    • (2001) Molecular and Cellular Biology , vol.21 , Issue.16 , pp. 5591-5604
    • Galande, S.1    Dickinson, L.A.2    Mian, S.3    Sikorska, M.4    Kohwi-Shigematsu, T.5
  • 16
    • 42449085407 scopus 로고    scopus 로고
    • PDZ domain-mediated dimerization and homeodomain-directed specificity are required for high-affinity DNA binding by SATB1
    • DOI 10.1093/nar/gkm1151
    • Purbey, P.K., Singh, S., Kumar, P.P., Mehta, S., Ganesh, K.N., Mitra, D. and Galande, S. (2008) PDZ domain-mediated dimerization and homeodomain-directed specificity are required for high-affinity DNA binding by SATB1. Nucleic Acids Res., 36, 2107-2122. (Pubitemid 351566987)
    • (2008) Nucleic Acids Research , vol.36 , Issue.7 , pp. 2107-2122
    • Purbey, P.K.1    Singh, S.2    Kumar, P.P.3    Mehta, S.4    Ganesh, K.N.5    Mitra, D.6    Galande, S.7
  • 18
    • 33646490450 scopus 로고    scopus 로고
    • Phosphorylation of SATB1, a global gene regulator, acts as a molecular switch regulating its transcriptional activity in vivo
    • Pavan, K.P., Purbey, P.K., Sinha, C.K., Notani, D., Limaye, A., Jayani, R.S. and Galande, S. (2006) Phosphorylation of SATB1, a global gene regulator, acts as a molecular switch regulating its transcriptional activity in vivo. Mol. Cell, 22, 231-243.
    • (2006) Mol. Cell. , vol.22 , pp. 231-243
    • Pavan, K.P.1    Purbey, P.K.2    Sinha, C.K.3    Notani, D.4    Limaye, A.5    Jayani, R.S.6    Galande, S.7
  • 19
    • 49649100923 scopus 로고    scopus 로고
    • SUMO conjugation to the matrix attachment region-binding protein special AT-rich sequence-binding protein-1 (SATB1), targets SATB1 to promyelocytic nuclear bodies where it undergoes caspase cleavage
    • Tan, J.A.T., Sun, Y.J., Song, J., Chen, Y., Krontiris, T.G. and Durrin, L.K. (2008) SUMO conjugation to the matrix attachment region-binding protein, special AT-rich sequence-binding protein-1 (SATB1), targets SATB1 to promyelocytic nuclear bodies where it undergoes caspase cleavage. J. Biol. Chem., 283, 18124-18134.
    • (2008) J. Biol. Chem. , vol.283 , pp. 18124-18134
    • Tan, J.A.T.1    Sun, Y.J.2    Song, J.3    Chen, Y.4    Krontiris, T.G.5    Durrin, L.K.6
  • 20
    • 0034161939 scopus 로고    scopus 로고
    • The MAR-binding protein SATB1 orchestrates temporal and spatial expression of multiple genes during T-cell development
    • Alvarez, J.D., Yasui, D.H., Niida, H., Joh, T., Loh, D.Y. and Kohwi-Shigematsu, T. (2000) The MAR-binding protein SATB1 orchestrates temporal and spatial expression of multiple genes during T-cell development. Genes Dev., 14, 521-535. (Pubitemid 30159772)
    • (2000) Genes and Development , vol.14 , Issue.5 , pp. 521-535
    • Alvarez, J.D.1    Yasui, D.H.2    Niida, H.3    Joh, T.4    Loh, D.Y.5    Kohwi-Shigematsu, T.6
  • 21
    • 34548599879 scopus 로고    scopus 로고
    • Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1
    • DOI 10.1093/nar/gkm504
    • Yamasaki, K., Akiba, T., Yamasaki, T. and Harata, K. (2007) Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1. Nucleic Acids Res., 35, 5073-5084. (Pubitemid 47394192)
    • (2007) Nucleic Acids Research , vol.35 , Issue.15 , pp. 5073-5084
    • Yamasaki, K.1    Akiba, T.2    Yamasaki, T.3    Harata, K.4
  • 22
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • DOI 10.1016/S0076-6879(97)76066-X
    • Otwinowski, Z. and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol, 276, 307-326. (Pubitemid 27085611)
    • (1997) Methods in Enzymology , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 23
    • 4644366388 scopus 로고    scopus 로고
    • HKL2MAP: A graphical user interface for phasing with SHELX programs
    • Pape, T. and Schneider, T.R. (2004) HKL2MAP: a graphical user interface for phasing with SHELX programs. J. Appl. Cryst., 37, 843-844.
    • (2004) J. Appl. Cryst. , vol.37 , pp. 843-844
    • Pape, T.1    Schneider, T.R.2
  • 26
    • 33846426122 scopus 로고    scopus 로고
    • Solving structures of protein complexes by molecular replacement with Phaser
    • McCoy, A. (2007) Solving structures of protein complexes by molecular replacement with Phaser. Acta Crystallogr. D Biol. Crystallogr., 63, 32-41.
    • (2007) Acta Crystallogr. D Biol. Crystallogr. , vol.63 , pp. 32-41
    • McCoy, A.1
  • 28
    • 0034009520 scopus 로고    scopus 로고
    • Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling
    • Schuck, P. (2000) Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling. Biophys. J., 78, 1606-1619. (Pubitemid 30141584)
    • (2000) Biophysical Journal , vol.78 , Issue.3 , pp. 1606-1619
    • Schuck, P.1
  • 29
    • 0042855798 scopus 로고    scopus 로고
    • On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation
    • DOI 10.1016/S0003-2697(03)00289-6
    • Schuck, P. (2003) On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation. Anal. Biochem., 320, 104-124. (Pubitemid 36937072)
    • (2003) Analytical Biochemistry , vol.320 , Issue.1 , pp. 104-124
    • Schuck, P.1
  • 30
    • 0015222647 scopus 로고
    • Interpretation of protein structures: Estimation of static accessibility
    • Lee, B. and Richards, F.M. (1971) Interpretation of protein structures: estimation of static accessibility. J. Mol. Biol., 55, 379-400.
    • (1971) J. Mol. Biol. , vol.55 , pp. 379-400
    • Lee, B.1    Richards, F.M.2
  • 33
    • 0036898580 scopus 로고    scopus 로고
    • Long-range chromatin regulatory interactions in vivo
    • DOI 10.1038/ng1051
    • Carter, D., Chakalova, L., Osborne, C.S., Dai, Y.F. and Fraser, P. (2002) Long-range chromatin regulatory interactions in vivo. Nat. Genet., 32, 623-626. (Pubitemid 35435174)
    • (2002) Nature Genetics , vol.32 , Issue.4 , pp. 623-626
    • Carter, D.1    Chakalova, L.2    Osborne, C.S.3    Dai, Y.-F.4    Fraser, P.5
  • 34
    • 5444237577 scopus 로고    scopus 로고
    • Long-range intrachromosomal interactions in the T helper type 2 cytokine locus
    • DOI 10.1038/ni1115
    • Spilianakis, C.G. and Flavell, R.A. (2004) Long-range intrachromosomal interactions in the T helper type 2 cytokine locus. Nat. Immunol., 5, 1017-1027. (Pubitemid 41057721)
    • (2004) Nature Immunology , vol.5 , Issue.10 , pp. 1017-1027
    • Spilianakis, C.G.1    Flavell, R.A.2
  • 36
    • 8344264534 scopus 로고    scopus 로고
    • Heterochromatin regulates cell type-specific long-range chromatin interactions essential for directed recombination
    • DOI 10.1016/j.cell.2004.10.020, PII S0092867404010025
    • Jia, S.T., Yamada, T. and Grewal, S.I. (2004) Heterochromatin regulates cell type-specific long-range chromatin interactions essential for directed recombination. Cell, 119, 469-480. (Pubitemid 39482347)
    • (2004) Cell , vol.119 , Issue.4 , pp. 469-480
    • Jia, S.1    Yamada, T.2    Grewal, S.I.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.