-
1
-
-
11144339384
-
Long-range control of gene expression: Emerging mechanisms and disruption in disease
-
DOI 10.1086/426833
-
Kleinjan, D.A. and van Heyningen, V. (2005) Long-range control of gene expression: Emerging mechanisms and disruption in disease. Am. J. Hum. Genet., 76, 8-32. (Pubitemid 40023762)
-
(2005)
American Journal of Human Genetics
, vol.76
, Issue.1
, pp. 8-32
-
-
Kleinjan, D.A.1
Van Heyningen, V.2
-
2
-
-
0042767995
-
The dynamics of chromosome organization and gene regulation
-
DOI 10.1146/annurev.biochem.72.121801.161724
-
Spector, D.L. (2003) The dynamics of chromosome organization and gene regulation. Annu. Rev. Biochem., 72, 573-608. (Pubitemid 36930454)
-
(2003)
Annual Review of Biochemistry
, vol.72
, pp. 573-608
-
-
Spector, D.L.1
-
3
-
-
0026758357
-
A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition
-
Dickinson, L.A., Joh, T., Kohwi, Y. and Kohwi-Shigematsu, T. (1992) A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition. Cell, 70, 631-645.
-
(1992)
Cell
, vol.70
, pp. 631-645
-
-
Dickinson, L.A.1
Joh, T.2
Kohwi, Y.3
Kohwi-Shigematsu, T.4
-
4
-
-
0026597313
-
Biological significance of unwinding capability of nuclear matrix-associating DNAs
-
Bode, J., Kohwi, Y., Dickinson, L., Joh, T., Klehr, D., Mielke, C. and Kohwi-Shigematsu, T. (1992) Biological significance of unwinding capability of nuclear matrix-associating DNAs. Science, 255, 195-197.
-
(1992)
Science
, vol.255
, pp. 195-197
-
-
Bode, J.1
Kohwi, Y.2
Dickinson, L.3
Joh, T.4
Klehr, D.5
Mielke, C.6
Kohwi-Shigematsu, T.7
-
5
-
-
17044363230
-
SATB1 family protein expressed during early erythroid differentiation modifies globin gene expression
-
Wen, J., Huang, S.M., Rogers, H., Dickinson, L.A., Kohwi-Shigematsu, T. and Noguchi, C.T. (2005) SATB1 family protein expressed during early erythroid differentiation modifies globin gene expression. Blood, 105, 3330-3339.
-
(2005)
Blood
, vol.105
, pp. 3330-3339
-
-
Wen, J.1
Huang, S.M.2
Rogers, H.3
Dickinson, L.A.4
Kohwi-Shigematsu, T.5
Noguchi, C.T.6
-
6
-
-
14044266330
-
Displacement of SATB1-bound histone deacetylase 1 corepressor by the human immunodeficiency virus type 1 transactivator induces expression of interleukin-2 and its receptor in T cells
-
DOI 10.1128/MCB.25.5.1620-1633.2005
-
Kumar, P.P., Purbey, P.K., Ravi, D.S., Mitra, D. and Galande, S. (2005) Displacement of SATB1-bound histone deacetylase 1 corepressor by the human immunodeficiency virus type 1 transactivator induces expression of interleukin-2 and its receptor in T cells. Mol. Cell. Biol., 25, 1620-1633. (Pubitemid 40280132)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.5
, pp. 1620-1633
-
-
Kumar, P.P.1
Purbey, P.K.2
Ravi, D.S.3
Mitra, D.4
Galande, S.5
-
7
-
-
61749083541
-
Acetylation-dependent interaction of SATB1 and CtBP1 mediates transcriptional repression by SATB1
-
Purbey, P.K., Singh, S., Notani, D., Kumar, P.P., Limaye, A.S. and Galande, S. (2009) Acetylation-dependent interaction of SATB1 and CtBP1 mediates transcriptional repression by SATB1. Mol. Cell. Biol., 29, 1321-1337.
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 1321-1337
-
-
Purbey, P.K.1
Singh, S.2
Notani, D.3
Kumar, P.P.4
Limaye, A.S.5
Galande, S.6
-
8
-
-
77956534729
-
SATB1 dictates expression of multiple genes including IL-5 involved in human T helper cell differentiation
-
Ahlfors, H., Limaye, A., Elo, L.L., Tuomela, S., Burute, M., Gottimukkala, K., Notani, D., Rasool, O., Galande, S. and Lahesmaa, R. (2010) SATB1 dictates expression of multiple genes including IL-5 involved in human T helper cell differentiation. Blood, 116, 1443-1453.
-
(2010)
Blood
, vol.116
, pp. 1443-1453
-
-
Ahlfors, H.1
Limaye, A.2
Elo, L.L.3
Tuomela, S.4
Burute, M.5
Gottimukkala, K.6
Notani, D.7
Rasool, O.8
Galande, S.9
Lahesmaa, R.10
-
9
-
-
0037057668
-
SATB1 targets chromatin remodelling to regulate genes over long distances
-
Yasui, D., Miyano, M., Cai, S.T., Varga-WEisz, P. and Kohwi-Shigematsu, T. (2002) SATB1 targets chromatin remodelling to regulate genes over long distances. Nature, 419, 641-645.
-
(2002)
Nature
, vol.419
, pp. 641-645
-
-
Yasui, D.1
Miyano, M.2
Cai, S.T.3
Varga-Weisz, P.4
Kohwi-Shigematsu, T.5
-
10
-
-
33750465872
-
SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes
-
DOI 10.1038/ng1913, PII NG1913
-
Cai, S.T., Lee, C.C. and Kohwi-Shigematsu, T. (2006) SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes. Nat. Genet., 38, 1278-1288. (Pubitemid 44646290)
-
(2006)
Nature Genetics
, vol.38
, Issue.11
, pp. 1278-1288
-
-
Cai, S.1
Lee, C.C.2
Kohwi-Shigematsu, T.3
-
11
-
-
33845871732
-
Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus
-
DOI 10.1038/ncb1516, PII NCB1516
-
Kumar, P., Bischof, O., Purbey, P.K., Notani, D., Urlaub, H., Dejean, A. and Galande, S. (2007) Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus. Nat. Cell. Biol., 9, 45-56. (Pubitemid 46024196)
-
(2007)
Nature Cell Biology
, vol.9
, Issue.1
, pp. 45-56
-
-
Pavan Kumar, P.1
Bischof, O.2
Purbey, P.K.3
Notani, D.4
Urlaub, H.5
Dejean, A.6
Galande, S.7
-
12
-
-
40749094918
-
SATB1 reprogrammes gene expression to promote breast tumour growth and metastasis
-
DOI 10.1038/nature06781, PII NATURE06781
-
Han, H.J., Russo, J., Kohwi, Y. and Kohwi-Shigematsu, T. (2008) SATB1 reprogrammes gene expression to promote breast tumour growth and metastasis. Nature, 452, 187-193. (Pubitemid 351380252)
-
(2008)
Nature
, vol.452
, Issue.7184
, pp. 187-193
-
-
Han, H.-J.1
Russo, J.2
Kohwi, Y.3
Kohwi-Shigematsu, T.4
-
13
-
-
0030977226
-
An atypical homeodomain in SATB1 promotes specific recognition of the key structural element in a matrix attachment region
-
DOI 10.1074/jbc.272.17.11463
-
Dickinson, L.A., Dickinson, C.D. and KohwiShigematsu, T. (1997) An atypical homeodomain in SATB1 promotes specific recognition of the key structural element in a matrix attachment region. J. Biol. Chem., 272, 11463-11470. (Pubitemid 27184155)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.17
, pp. 11463-11470
-
-
Dickinson, L.A.1
Dickinson, C.D.2
Kohwi-Shigematsu, T.3
-
14
-
-
0028219858
-
A novel DNA-binding motif in the nuclear matrix attachment DNA-binding protein SATB1
-
Nakagomi, K., Kohwi, Y., Dickinson, L.A. and Kohwi-Shigematsu, T. (1994) A novel DNA-binding motif in the nuclear matrix attachment DNA-binding protein SATB1. Mol. Cell. Biol., 14, 1852-1860. (Pubitemid 24074580)
-
(1994)
Molecular and Cellular Biology
, vol.14
, Issue.3
, pp. 1852-1860
-
-
Nakagomi, K.1
Kohwi, Y.2
Dickinson, L.A.3
Kohwi-Shigematsu, T.4
-
15
-
-
0034928793
-
SATB1 cleavage by caspase 6 disrupts PDZ domain-mediated dimerization, causing detachment from chromatin early in T-cell apoptosis
-
DOI 10.1128/MCB.21.16.5591-5604.2001
-
Galande, S., Dickinson, L.A., Mian, I.S., Sikorska, M. and Kohwi-Shigematsu, T. (2001) SATB1 cleavage by caspase 6 disrupts PDZ domain-mediated dimerization, causing detachment from chromatin early in T-cell apoptosis. Mol. Cell. Biol., 21, 5591-5604. (Pubitemid 32702462)
-
(2001)
Molecular and Cellular Biology
, vol.21
, Issue.16
, pp. 5591-5604
-
-
Galande, S.1
Dickinson, L.A.2
Mian, S.3
Sikorska, M.4
Kohwi-Shigematsu, T.5
-
16
-
-
42449085407
-
PDZ domain-mediated dimerization and homeodomain-directed specificity are required for high-affinity DNA binding by SATB1
-
DOI 10.1093/nar/gkm1151
-
Purbey, P.K., Singh, S., Kumar, P.P., Mehta, S., Ganesh, K.N., Mitra, D. and Galande, S. (2008) PDZ domain-mediated dimerization and homeodomain-directed specificity are required for high-affinity DNA binding by SATB1. Nucleic Acids Res., 36, 2107-2122. (Pubitemid 351566987)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.7
, pp. 2107-2122
-
-
Purbey, P.K.1
Singh, S.2
Kumar, P.P.3
Mehta, S.4
Ganesh, K.N.5
Mitra, D.6
Galande, S.7
-
17
-
-
75749152053
-
Global regulator SATB1 recruits beta-Catenin and regulates T(H)2 differentiation in Wnt-dependent manner
-
Notani, D., Gottimukkala, K.P., Jayani, R.S., Limaye, A.S., Damle, M.V., Mehta, S., Purbey, P.K., Joseph, J. and Galande, S. (2010) Global regulator SATB1 recruits beta-Catenin and regulates T(H)2 differentiation in Wnt-dependent manner. Plos Biol., 8, e1000296.
-
(2010)
Plos Biol.
, vol.8
-
-
Notani, D.1
Gottimukkala, K.P.2
Jayani, R.S.3
Limaye, A.S.4
Damle, M.V.5
Mehta, S.6
Purbey, P.K.7
Joseph, J.8
Galande, S.9
-
18
-
-
33646490450
-
Phosphorylation of SATB1, a global gene regulator, acts as a molecular switch regulating its transcriptional activity in vivo
-
Pavan, K.P., Purbey, P.K., Sinha, C.K., Notani, D., Limaye, A., Jayani, R.S. and Galande, S. (2006) Phosphorylation of SATB1, a global gene regulator, acts as a molecular switch regulating its transcriptional activity in vivo. Mol. Cell, 22, 231-243.
-
(2006)
Mol. Cell.
, vol.22
, pp. 231-243
-
-
Pavan, K.P.1
Purbey, P.K.2
Sinha, C.K.3
Notani, D.4
Limaye, A.5
Jayani, R.S.6
Galande, S.7
-
19
-
-
49649100923
-
SUMO conjugation to the matrix attachment region-binding protein special AT-rich sequence-binding protein-1 (SATB1), targets SATB1 to promyelocytic nuclear bodies where it undergoes caspase cleavage
-
Tan, J.A.T., Sun, Y.J., Song, J., Chen, Y., Krontiris, T.G. and Durrin, L.K. (2008) SUMO conjugation to the matrix attachment region-binding protein, special AT-rich sequence-binding protein-1 (SATB1), targets SATB1 to promyelocytic nuclear bodies where it undergoes caspase cleavage. J. Biol. Chem., 283, 18124-18134.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 18124-18134
-
-
Tan, J.A.T.1
Sun, Y.J.2
Song, J.3
Chen, Y.4
Krontiris, T.G.5
Durrin, L.K.6
-
20
-
-
0034161939
-
The MAR-binding protein SATB1 orchestrates temporal and spatial expression of multiple genes during T-cell development
-
Alvarez, J.D., Yasui, D.H., Niida, H., Joh, T., Loh, D.Y. and Kohwi-Shigematsu, T. (2000) The MAR-binding protein SATB1 orchestrates temporal and spatial expression of multiple genes during T-cell development. Genes Dev., 14, 521-535. (Pubitemid 30159772)
-
(2000)
Genes and Development
, vol.14
, Issue.5
, pp. 521-535
-
-
Alvarez, J.D.1
Yasui, D.H.2
Niida, H.3
Joh, T.4
Loh, D.Y.5
Kohwi-Shigematsu, T.6
-
21
-
-
34548599879
-
Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1
-
DOI 10.1093/nar/gkm504
-
Yamasaki, K., Akiba, T., Yamasaki, T. and Harata, K. (2007) Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1. Nucleic Acids Res., 35, 5073-5084. (Pubitemid 47394192)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.15
, pp. 5073-5084
-
-
Yamasaki, K.1
Akiba, T.2
Yamasaki, T.3
Harata, K.4
-
22
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski, Z. and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol, 276, 307-326. (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
23
-
-
4644366388
-
HKL2MAP: A graphical user interface for phasing with SHELX programs
-
Pape, T. and Schneider, T.R. (2004) HKL2MAP: a graphical user interface for phasing with SHELX programs. J. Appl. Cryst., 37, 843-844.
-
(2004)
J. Appl. Cryst.
, vol.37
, pp. 843-844
-
-
Pape, T.1
Schneider, T.R.2
-
24
-
-
49649085631
-
Automated structure solution with the PHENIX suite
-
Zwart, P.H., Afonine, P.V., Grosse-Kunstleve, R.W., Hung, L.W., Ioerger, T.R., McCoy, A.J., McKee, E., Moriarty, N.W., Read, R.J., Sacchettini, J.C. et al. (2008) Automated structure solution with the PHENIX suite. Methods Mol. Biol., 426, 419-435.
-
(2008)
Methods Mol. Biol.
, vol.426
, pp. 419-435
-
-
Zwart, P.H.1
Afonine, P.V.2
Grosse-Kunstleve, R.W.3
Hung, L.W.4
Ioerger, T.R.5
McCoy, A.J.6
McKee, E.7
Moriarty, N.W.8
Read, R.J.9
Sacchettini, J.C.10
-
26
-
-
33846426122
-
Solving structures of protein complexes by molecular replacement with Phaser
-
McCoy, A. (2007) Solving structures of protein complexes by molecular replacement with Phaser. Acta Crystallogr. D Biol. Crystallogr., 63, 32-41.
-
(2007)
Acta Crystallogr. D Biol. Crystallogr.
, vol.63
, pp. 32-41
-
-
McCoy, A.1
-
27
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macro-molecular structure determination
-
Brunger, A.T., Adams, P.D., Clore, G.M., DeLano, W.L., Gros, P., Grosse-Kunstleve, R.W., Jiang, J.S., Kuszewski, J., Nilges, M., Pannu, N.S. et al. (1998) Crystallography & NMR system: a new software suite for macro-molecular structure determination. Acta Crystallogr. D Biol. Crystallogr., 54, 905-921.
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
28
-
-
0034009520
-
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling
-
Schuck, P. (2000) Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling. Biophys. J., 78, 1606-1619. (Pubitemid 30141584)
-
(2000)
Biophysical Journal
, vol.78
, Issue.3
, pp. 1606-1619
-
-
Schuck, P.1
-
29
-
-
0042855798
-
On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation
-
DOI 10.1016/S0003-2697(03)00289-6
-
Schuck, P. (2003) On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation. Anal. Biochem., 320, 104-124. (Pubitemid 36937072)
-
(2003)
Analytical Biochemistry
, vol.320
, Issue.1
, pp. 104-124
-
-
Schuck, P.1
-
30
-
-
0015222647
-
Interpretation of protein structures: Estimation of static accessibility
-
Lee, B. and Richards, F.M. (1971) Interpretation of protein structures: estimation of static accessibility. J. Mol. Biol., 55, 379-400.
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
31
-
-
77955959658
-
The role of SATB1 in breast cancer pathogenesis
-
Iorns, E., Hnatyszyn, H.J., Seo, P., Clarke, J., Ward, T. and Lippman, M. (2010) The role of SATB1 in breast cancer pathogenesis. J. Natl. Cancer Inst., 102, 1284-1296.
-
(2010)
J. Natl. Cancer Inst.
, vol.102
, pp. 1284-1296
-
-
Iorns, E.1
Hnatyszyn, H.J.2
Seo, P.3
Clarke, J.4
Ward, T.5
Lippman, M.6
-
32
-
-
78650317177
-
Re: The role of SATB1 in breast cancer pathogenesis
-
Kohwi-Shigematsu, T., Han, H.J., Russo, J. and Kohwi, Y. (2010) Re: the role of SATB1 in breast cancer pathogenesis. J. Natl. Cancer Inst., 102, 1879-1880.
-
(2010)
J. Natl. Cancer Inst.
, vol.102
, pp. 1879-1880
-
-
Kohwi-Shigematsu, T.1
Han, H.J.2
Russo, J.3
Kohwi, Y.4
-
33
-
-
0036898580
-
Long-range chromatin regulatory interactions in vivo
-
DOI 10.1038/ng1051
-
Carter, D., Chakalova, L., Osborne, C.S., Dai, Y.F. and Fraser, P. (2002) Long-range chromatin regulatory interactions in vivo. Nat. Genet., 32, 623-626. (Pubitemid 35435174)
-
(2002)
Nature Genetics
, vol.32
, Issue.4
, pp. 623-626
-
-
Carter, D.1
Chakalova, L.2
Osborne, C.S.3
Dai, Y.-F.4
Fraser, P.5
-
34
-
-
5444237577
-
Long-range intrachromosomal interactions in the T helper type 2 cytokine locus
-
DOI 10.1038/ni1115
-
Spilianakis, C.G. and Flavell, R.A. (2004) Long-range intrachromosomal interactions in the T helper type 2 cytokine locus. Nat. Immunol., 5, 1017-1027. (Pubitemid 41057721)
-
(2004)
Nature Immunology
, vol.5
, Issue.10
, pp. 1017-1027
-
-
Spilianakis, C.G.1
Flavell, R.A.2
-
35
-
-
22144486551
-
Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1
-
DOI 10.1016/j.cell.2005.05.008, PII S0092867405004538
-
Carroll, J.S., Liu, X.S., Brodsky, A.S., Li, W., Meyer, C.A., Szary, A.J., Eeckhoute, J., Shao, W.L., Hestermann, E.V., Geistlinger, T.R. et al. (2005) Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1. Cell, 122, 33-43. (Pubitemid 40977938)
-
(2005)
Cell
, vol.122
, Issue.1
, pp. 33-43
-
-
Carroll, J.S.1
Liu, X.S.2
Brodsky, A.S.3
Li, W.4
Meyer, C.A.5
Szary, A.J.6
Eeckhoute, J.7
Shao, W.8
Hestermann, E.V.9
Geistlinger, T.R.10
Fox, E.A.11
Silver, P.A.12
Brown, M.13
-
36
-
-
8344264534
-
Heterochromatin regulates cell type-specific long-range chromatin interactions essential for directed recombination
-
DOI 10.1016/j.cell.2004.10.020, PII S0092867404010025
-
Jia, S.T., Yamada, T. and Grewal, S.I. (2004) Heterochromatin regulates cell type-specific long-range chromatin interactions essential for directed recombination. Cell, 119, 469-480. (Pubitemid 39482347)
-
(2004)
Cell
, vol.119
, Issue.4
, pp. 469-480
-
-
Jia, S.1
Yamada, T.2
Grewal, S.I.S.3
-
37
-
-
1042278041
-
Cooperativity in long-range gene regulation by the lambda CI repressor
-
Dodd, I.B., Shearwin, K.E., Perkins, A.J., Burr, T., Hochschild, A. and Egan, J.B. (2004) Cooperativity in long-range gene regulation by the lambda CI repressor. Genes Dev., 18, 344-354.36.
-
(2004)
Genes Dev.
, vol.18
, pp. 344-35436
-
-
Dodd, I.B.1
Shearwin, K.E.2
Perkins, A.J.3
Burr, T.4
Hochschild, A.5
Egan, J.B.6
|