Whole-genome sequencing of the Mycobacterium tuberculosis manila Sublineage results in less clustering and better resolution than Mycobacterial interspersed repetitive-unit-variable-number tandem-repeat (MIRU-VNTR) typing and Spoligotyping

Journal of Clinical Microbiology

Volumn 52, Issue 10, 2014, Pages 3795-3798

  Jamieson, F B ^a,b   Teatero, S ^a   Guthrie, J L ^a   Neemuchwala, A ^a   Fittipaldi, N ^a,b   Mehaffy, C ^a,b,c  

^a PUBLIC HEALTH ONTARIO   (Canada)

^b UNIVERSITY OF TORONTO   (Canada)

^c Department of Environmental and Radiological Health Sciences   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG; BACTERIAL DNA;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CLINICAL ARTICLE; CONTROLLED STUDY; CONVERGENT EVOLUTION; GENE CLUSTER; GENE SEQUENCE; GENETIC ALGORITHM; GENETIC PROCEDURES; GENETIC VARIABILITY; GENOTYPING TECHNIQUE; HUMAN; INDEL MUTATION; INTERMETHOD COMPARISON; MOLECULAR TYPING; MUTATIONAL ANALYSIS; MYCOBACTERIAL INTERSPERSED REPETITIVE UNIT VARIABLE NUMBER TANDEM REPEAT TYPING; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; SEQUENCE ALIGNMENT; SINGLE NUCLEOTIDE POLYMORPHISM; SPOLIGOTYPING; VAAL ALGORITHM; WHOLE GENOME SEQUENCING; BACTERIAL GENOME; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA SEQUENCE; EVALUATION STUDY; GENETICS; GENOTYPE; MOLECULAR EPIDEMIOLOGY; PROCEDURES;

CLUSTER ANALYSIS; DNA, BACTERIAL; GENOME, BACTERIAL; GENOTYPE; HUMANS; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; MYCOBACTERIUM TUBERCULOSIS; SEQUENCE ANALYSIS, DNA;

EID: 84907160953     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.01726-14     Document Type: Article

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