메뉴 건너뛰기




Volumn 236, Issue , 2014, Pages 92-106

Revealing cell assemblies at multiple levels of granularity

Author keywords

Biophysically inspired and directed spike train association metric; Clustering; Community detection; Spike train communities

Indexed keywords

ANIMAL CELL; ARTICLE; CELL ASSEMBLY; CELL GRANULE; CELLS; EXCITATORY NEURON; HIPPOCAMPAL CA1 REGION; HIPPOCAMPAL CA3 REGION; INHIBITORY NEURON; INTERMETHOD COMPARISON; MOUSE; NERVE CELL; NONHUMAN; RAT; RETINA GANGLION CELL; SALAMANDER; SPIKE; ACTION POTENTIAL; ALGORITHM; AMBYSTOMA; ANIMAL; BIOLOGICAL MODEL; C57BL MOUSE; COMPUTER SIMULATION; DEPTH PERCEPTION; EXPLORATORY BEHAVIOR; HIPPOCAMPUS; NERVE CELL INHIBITION; PHYSIOLOGY; PROBABILITY; SIGNAL PROCESSING; TISSUE CULTURE TECHNIQUE;

EID: 84907147265     PISSN: 01650270     EISSN: 1872678X     Source Type: Journal    
DOI: 10.1016/j.jneumeth.2014.08.011     Document Type: Article
Times cited : (29)

References (53)
  • 1
    • 0035972883 scopus 로고    scopus 로고
    • Detecting precise firing sequences in experimental data
    • May
    • Abeles M., Gat I. Detecting precise firing sequences in experimental data. J Neurosci Methods 2001, 107(May (1/2)):141-154.
    • (2001) J Neurosci Methods , vol.107 , Issue.1-2 , pp. 141-154
    • Abeles, M.1    Gat, I.2
  • 3
    • 84877585171 scopus 로고    scopus 로고
    • Whole-brain functional imaging at cellular resolution using light-sheet microscopy
    • Ahrens M.B., Orger M.B., Robson D.N., Li J.M., Keller P.J. Whole-brain functional imaging at cellular resolution using light-sheet microscopy. Nat Methods 2013, 10(5):413-420.
    • (2013) Nat Methods , vol.10 , Issue.5 , pp. 413-420
    • Ahrens, M.B.1    Orger, M.B.2    Robson, D.N.3    Li, J.M.4    Keller, P.J.5
  • 4
    • 0025347164 scopus 로고
    • Simulation of paleocortex performs hierarchical clustering
    • Ambrosingerson J., Granger R., Lynch G. Simulation of paleocortex performs hierarchical clustering. Science 1990, 247(March (4948)):1344-1348.
    • (1990) Science , vol.247 , Issue.MARCH 4948 , pp. 1344-1348
    • Ambrosingerson, J.1    Granger, R.2    Lynch, G.3
  • 5
    • 0034666429 scopus 로고    scopus 로고
    • Origin of transient and sustained responses in ganglion cells of the retina
    • Awatramani G., Slaughter M. Origin of transient and sustained responses in ganglion cells of the retina. J Neurosci 2000, 20(September (18)):7087-7095.
    • (2000) J Neurosci , vol.20 , Issue.SEPTEMBER 18 , pp. 7087-7095
    • Awatramani, G.1    Slaughter, M.2
  • 6
    • 3042541890 scopus 로고    scopus 로고
    • Characterization of neocortical principal cells and interneurons by network interactions and extracellular features
    • Bartho´ P., Hirase H., Monconduit L., Zugaro M., Harris K.D., Buzsa´ki G. Characterization of neocortical principal cells and interneurons by network interactions and extracellular features. J Neurophysiol 2004, 92(1):600-608.
    • (2004) J Neurophysiol , vol.92 , Issue.1 , pp. 600-608
    • Bartho´, P.1    Hirase, H.2    Monconduit, L.3    Zugaro, M.4    Harris, K.D.5    Buzsa´ki, G.6
  • 8
    • 0038589165 scopus 로고    scopus 로고
    • The anatomy of a large-scale hypertextual Web search engine
    • Brin S., Page L. The anatomy of a large-scale hypertextual Web search engine. Comput Netw Syst 1998, 30(1-7):107-117.
    • (1998) Comput Netw Syst , vol.30 , Issue.1-7 , pp. 107-117
    • Brin, S.1    Page, L.2
  • 9
    • 11144355852 scopus 로고    scopus 로고
    • Large-scale recording of neuronal ensembles
    • Buzsaki G. Large-scale recording of neuronal ensembles. Nat Neurosci 2004, 7(May (5)):446-451.
    • (2004) Nat Neurosci , vol.7 , Issue.MAY 5 , pp. 446-451
    • Buzsaki, G.1
  • 10
    • 78049303516 scopus 로고    scopus 로고
    • Neural syntax: cell assemblies, synapsembles, and readers
    • Buzsaki G. Neural syntax: cell assemblies, synapsembles, and readers. Neuron 2010, 68(November (3)):362-385.
    • (2010) Neuron , vol.68 , Issue.NOVEMBER 3 , pp. 362-385
    • Buzsaki, G.1
  • 11
    • 80052687731 scopus 로고    scopus 로고
    • Protein multi-scale organization through graph partitioning and robustness analysis: application to the myosin-myosin light chain interaction
    • Delmotte A., Tate E.W., Yaliraki S.N., Barahona M. Protein multi-scale organization through graph partitioning and robustness analysis: application to the myosin-myosin light chain interaction. Phys Biol 2011, 8(5):055010.
    • (2011) Phys Biol , vol.8 , Issue.5 , pp. 055010
    • Delmotte, A.1    Tate, E.W.2    Yaliraki, S.N.3    Barahona, M.4
  • 13
    • 77955641547 scopus 로고    scopus 로고
    • Stability of graph communities across time scales
    • Delvenne J.C., Yaliraki S.N., Barahona M. Stability of graph communities across time scales. Proc Natl Acad Sci USA 2010, 107(July (29)):12755-12760.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.JULY 29 , pp. 12755-12760
    • Delvenne, J.C.1    Yaliraki, S.N.2    Barahona, M.3
  • 14
    • 34748889593 scopus 로고    scopus 로고
    • Forward and reverse hippocampal place-cell sequences during ripples
    • Diba K., Buzsaki G. Forward and reverse hippocampal place-cell sequences during ripples. Nat Neurosci 2007, 10(October (10)):1241-1242.
    • (2007) Nat Neurosci , vol.10 , Issue.OCTOBER 10 , pp. 1241-1242
    • Diba, K.1    Buzsaki, G.2
  • 15
    • 67650145260 scopus 로고    scopus 로고
    • Functional clustering algorithm for the analysis of dynamic network data
    • Feldt S., Waddell J., Hetrick V.L., Berke J.D., Z˙ochowski M. Functional clustering algorithm for the analysis of dynamic network data. Phys Rev E 2009, 79(May):056104.
    • (2009) Phys Rev E , vol.79 , Issue.May , pp. 056104
    • Feldt, S.1    Waddell, J.2    Hetrick, V.L.3    Berke, J.D.4    Zochowski, M.5
  • 16
    • 1642585712 scopus 로고    scopus 로고
    • Discovering spike patterns in neuronal responses
    • Fellous J., Tiesinga P., Thomas P., Sejnowski T. Discovering spike patterns in neuronal responses. J Neurosci 2004, 24(March (12)):2989-3001.
    • (2004) J Neurosci , vol.24 , Issue.MARCH 12 , pp. 2989-3001
    • Fellous, J.1    Tiesinga, P.2    Thomas, P.3    Sejnowski, T.4
  • 17
    • 74049087026 scopus 로고    scopus 로고
    • Community detection in graphs
    • Fortunato S. Community detection in graphs. Phys Rep 2010, 486(3-5):75-174.
    • (2010) Phys Rep , vol.486 , Issue.3-5 , pp. 75-174
    • Fortunato, S.1
  • 18
  • 19
    • 84886753290 scopus 로고    scopus 로고
    • Detecting multineuronal temporal patterns in parallel spike trains
    • Gansel K.S., Singer W. Detecting multineuronal temporal patterns in parallel spike trains. Front Neuroinform 2012, 6(18).
    • (2012) Front Neuroinform , vol.6 , Issue.18
    • Gansel, K.S.1    Singer, W.2
  • 20
    • 39749180280 scopus 로고    scopus 로고
    • Rapid neural coding in the retina with relative spike latencies
    • Gollisch T., Meister M. Rapid neural coding in the retina with relative spike latencies. Science 2008, 319(February (5866)):1108-1111.
    • (2008) Science , vol.319 , Issue.FEBRUARY 5866 , pp. 1108-1111
    • Gollisch, T.1    Meister, M.2
  • 21
    • 17844385319 scopus 로고    scopus 로고
    • Neural signatures of cell assembly organization
    • Harris K. Neural signatures of cell assembly organization. Nat Rev Neurosci 2005, 6(May (5)):399-407.
    • (2005) Nat Rev Neurosci , vol.6 , Issue.MAY 5 , pp. 399-407
    • Harris, K.1
  • 23
    • 79951527370 scopus 로고    scopus 로고
    • Spike-train communities: finding groups of similar spike trains
    • Humphries M.D. Spike-train communities: finding groups of similar spike trains. J Neurosci 2011, 31(February (6)):2321-2336.
    • (2011) J Neurosci , vol.31 , Issue.FEBRUARY 6 , pp. 2321-2336
    • Humphries, M.D.1
  • 24
    • 80054838537 scopus 로고    scopus 로고
    • How inhibition shapes cortical activity
    • Isaacson J.S., Scanziani M. How inhibition shapes cortical activity. Neuron 2011, 72(October (2)):231-243.
    • (2011) Neuron , vol.72 , Issue.OCTOBER 2 , pp. 231-243
    • Isaacson, J.S.1    Scanziani, M.2
  • 28
    • 84861957197 scopus 로고    scopus 로고
    • Ranking and clustering of nodes in networks with smart teleportation
    • Lambiotte R., Rosvall M. Ranking and clustering of nodes in networks with smart teleportation. Phys Rev E 2012, 85(May):056107.
    • (2012) Phys Rev E , vol.85 , Issue.MAY , pp. 056107
    • Lambiotte, R.1    Rosvall, M.2
  • 29
    • 0032693844 scopus 로고    scopus 로고
    • Independent component analyses for quantifying neuronal ensemble interactions
    • Laubach M., Shuler M., Nicolelis M. Independent component analyses for quantifying neuronal ensemble interactions. J Neurosci Methods 1999, 94(December (1)):141-154.
    • (1999) J Neurosci Methods , vol.94 , Issue.DECEMBER 1 , pp. 141-154
    • Laubach, M.1    Shuler, M.2    Nicolelis, M.3
  • 30
    • 84868159004 scopus 로고    scopus 로고
    • Slow dynamics and high variability in balanced cortical networks with clustered connections
    • Litwin-Kumar A., Doiron B. Slow dynamics and high variability in balanced cortical networks with clustered connections. Nat Neurosci 2012, 15(November (11)):1498-1505.
    • (2012) Nat Neurosci , vol.15 , Issue.NOVEMBER 11 , pp. 1498-1505
    • Litwin-Kumar, A.1    Doiron, B.2
  • 31
  • 32
    • 84887615865 scopus 로고    scopus 로고
    • Detecting cell assemblies in large neuronal populations
    • Lopes-Dos-Santos V., Ribeiro S., Tort A.B.L. Detecting cell assemblies in large neuronal populations. J Neurosci Methods 2013, 220(November (2)):149-166.
    • (2013) J Neurosci Methods , vol.220 , Issue.NOVEMBER 2 , pp. 149-166
    • Lopes-Dos-Santos, V.1    Ribeiro, S.2    Tort, A.B.L.3
  • 33
    • 79960240246 scopus 로고    scopus 로고
    • A new similarity measure for spike trains: sensitivity to bursts and periods of inhibition
    • Lyttle D., Fellous J.-M. A new similarity measure for spike trains: sensitivity to bursts and periods of inhibition. J Neurosci Methods 2011, 199(August (2)):296-309.
    • (2011) J Neurosci Methods , vol.199 , Issue.AUGUST 2 , pp. 296-309
    • Lyttle, D.1    Fellous, J.-M.2
  • 35
    • 84885083797 scopus 로고    scopus 로고
    • Hierarchical excitatory synaptic connectivity in mouse olfactory cortex
    • McGinley M.J., Westbrook G.L. Hierarchical excitatory synaptic connectivity in mouse olfactory cortex. Proc Natl Acad Sci USA 2013, 110(October (40)):16193-16198.
    • (2013) Proc Natl Acad Sci USA , vol.110 , Issue.OCTOBER 40 , pp. 16193-16198
    • McGinley, M.J.1    Westbrook, G.L.2
  • 37
    • 33947156744 scopus 로고    scopus 로고
    • Comparing clusterings - an information based distance
    • Meila M. Comparing clusterings - an information based distance. J Multivar Anal 2007, 98(5):873-895.
    • (2007) J Multivar Anal , vol.98 , Issue.5 , pp. 873-895
    • Meila, M.1
  • 38
    • 0028302901 scopus 로고
    • Multi-neuronal signals from the retina - acquisition and analysis
    • Meister M., Pine J., Baylor D. Multi-neuronal signals from the retina - acquisition and analysis. J Neurosci Methods 1994, 51(January (1)):95-106.
    • (1994) J Neurosci Methods , vol.51 , Issue.JANUARY 1 , pp. 95-106
    • Meister, M.1    Pine, J.2    Baylor, D.3
  • 39
    • 2942564706 scopus 로고    scopus 로고
    • Detecting community structure in networks
    • Newman M. Detecting community structure in networks. Eur Phys J B 2004, 38(March (2)):321-330.
    • (2004) Eur Phys J B , vol.38 , Issue.MARCH 2 , pp. 321-330
    • Newman, M.1
  • 40
    • 37649028224 scopus 로고    scopus 로고
    • Finding and evaluating community structure in networks
    • Newman M.E.J., Girvan M. Finding and evaluating community structure in networks. Phys Rev E 2004, 69(February (2)):026113.
    • (2004) Phys Rev E , vol.69 , Issue.FEBRUARY 2 , pp. 026113
    • Newman, M.E.J.1    Girvan, M.2
  • 41
    • 23044490853 scopus 로고    scopus 로고
    • Analyzing functional connectivity using a network likelihood model of ensemble neural spiking activity
    • Okatan M., Wilson M.A., Brown E.N. Analyzing functional connectivity using a network likelihood model of ensemble neural spiking activity. Neural Comput 2005, 17(September (9)):1927-1961.
    • (2005) Neural Comput , vol.17 , Issue.SEPTEMBER 9 , pp. 1927-1961
    • Okatan, M.1    Wilson, M.A.2    Brown, E.N.3
  • 42
    • 77956895982 scopus 로고    scopus 로고
    • Principal component analysis of ensemble recordings reveals cell assemblies at high temporal resolution
    • AUGUST-OCTOBER, SI
    • Peyrache A., Benchenane K., Khamassi M., Wiener S.I., Battaglia F.P. Principal component analysis of ensemble recordings reveals cell assemblies at high temporal resolution. J Comput Neurosci 2010, 29(August-October (1/2, SI)):309-325.
    • (2010) J Comput Neurosci , vol.29 , Issue.1-2 , pp. 309-325
    • Peyrache, A.1    Benchenane, K.2    Khamassi, M.3    Wiener, S.I.4    Battaglia, F.P.5
  • 43
    • 0037207286 scopus 로고    scopus 로고
    • Using noise signature to optimize spike-sorting and to assess neuronal classification quality
    • Pouzat C., Mazor O., Laurent G. Using noise signature to optimize spike-sorting and to assess neuronal classification quality. J Neurosci Methods 2002, 122(December (1)):43-57.
    • (2002) J Neurosci Methods , vol.122 , Issue.DECEMBER 1 , pp. 43-57
    • Pouzat, C.1    Mazor, O.2    Laurent, G.3
  • 44
    • 60549113334 scopus 로고    scopus 로고
    • Extracting information from neuronal populations: information theory and decoding approaches
    • Quiroga R.Q., Panzeri S. Extracting information from neuronal populations: information theory and decoding approaches. Nat Rev Neurosci 2009, 10(March (3)):173-185.
    • (2009) Nat Rev Neurosci , vol.10 , Issue.MARCH 3 , pp. 173-185
    • Quiroga, R.Q.1    Panzeri, S.2
  • 45
    • 39549086558 scopus 로고    scopus 로고
    • Maps of random walks on complex networks reveal community structure
    • Rosvall M., Bergstrom C.T. Maps of random walks on complex networks reveal community structure. Proc Natl Acad Sci USA 2008, 105(4):1118-1123.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.4 , pp. 1118-1123
    • Rosvall, M.1    Bergstrom, C.T.2
  • 46
    • 0033680939 scopus 로고    scopus 로고
    • Olfactory functions are mediated by parallel and hierarchical processing
    • Savic I., Gulyas B., Larsson M., Roland P. Olfactory functions are mediated by parallel and hierarchical processing. Neuron 2000, 26(June (3)):735-745.
    • (2000) Neuron , vol.26 , Issue.JUNE 3 , pp. 735-745
    • Savic, I.1    Gulyas, B.2    Larsson, M.3    Roland, P.4
  • 47
    • 84857539615 scopus 로고    scopus 로고
    • Markov dynamics as a zooming lens for multiscale community detection: non clique-like communities and the field-of-view limit
    • Schaub M.T., Delvenne J.-C., Yaliraki S.N., Barahona M. Markov dynamics as a zooming lens for multiscale community detection: non clique-like communities and the field-of-view limit. PLoS ONE 2012, 7(February (2)).
    • (2012) PLoS ONE , vol.7 , Issue.FEBRUARY 2
    • Schaub, M.T.1    Delvenne, J.-C.2    Yaliraki, S.N.3    Barahona, M.4
  • 50
    • 0035319165 scopus 로고    scopus 로고
    • A novel spike distance
    • van Rossum M. A novel spike distance. Neural Comput 2001, 13(April (4)):751-763.
    • (2001) Neural Comput , vol.13 , Issue.APRIL 4 , pp. 751-763
    • van Rossum, M.1
  • 51
    • 0032528729 scopus 로고    scopus 로고
    • Chaotic balanced state in a model of cortical circuits
    • van Vreeswijk C., Sompolinsky H. Chaotic balanced state in a model of cortical circuits. Neural Comput 1998, 10(August (6)):1321-1371.
    • (1998) Neural Comput , vol.10 , Issue.AUGUST 6 , pp. 1321-1371
    • van Vreeswijk, C.1    Sompolinsky, H.2
  • 52
    • 0029791918 scopus 로고    scopus 로고
    • Nature and precision of temporal coding in visual cortex: a metric-space analysis
    • Victor J., Purpura K. Nature and precision of temporal coding in visual cortex: a metric-space analysis. J Neurophysiol 1996, 76(August (2)):1310-1326.
    • (1996) J Neurophysiol , vol.76 , Issue.AUGUST 2 , pp. 1310-1326
    • Victor, J.1    Purpura, K.2
  • 53
    • 84867602635 scopus 로고    scopus 로고
    • Extracting functionally feedforward networks from a population of spiking neurons
    • Vincent K., Tauskela J.S., Thivierge J.-P. Extracting functionally feedforward networks from a population of spiking neurons. Front Comput Neurosci 2012, 6(October).
    • (2012) Front Comput Neurosci , vol.6 , Issue.OCTOBER
    • Vincent, K.1    Tauskela, J.S.2    Thivierge, J.-P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.