-
1
-
-
0037032835
-
The protein kinase complement of the human genome
-
Manning G, Whyte DB, Martinez R, Hunter T, Sudarsanam S (2002) The Protein Kinase Complement of the Human Genome. Science 298: 1912-1934.
-
(2002)
Science
, vol.298
, pp. 1912-1934
-
-
Manning, G.1
Whyte, D.B.2
Martinez, R.3
Hunter, T.4
Sudarsanam, S.5
-
2
-
-
79952284127
-
Hallmarks of cancer: The next generation
-
Hanahan D, Weinberg Robert A (2011) Hallmarks of Cancer: The Next Generation. Cell 144: 646-674.
-
(2011)
Cell
, vol.144
, pp. 646-674
-
-
Hanahan, D.1
Weinberg Robert, A.2
-
3
-
-
57749188299
-
Targeting cancer with small molecule kinase inhibitors
-
Zhang J, Yang PL, Gray NS (2009) Targeting cancer with small molecule kinase inhibitors. Nat Rev Cancer 9: 28-39.
-
(2009)
Nat Rev Cancer
, vol.9
, pp. 28-39
-
-
Zhang, J.1
Yang, P.L.2
Gray, N.S.3
-
4
-
-
0036635291
-
Glivec (STI571, imatinib), a rationally developed, targeted anticancer drug
-
Capdeville R, Buchdunger E, Zimmermann J, Matter A (2002) Glivec (STI571, imatinib), a rationally developed, targeted anticancer drug. Nat Rev Drug Discov 1: 493-502.
-
(2002)
Nat Rev Drug Discov
, vol.1
, pp. 493-502
-
-
Capdeville, R.1
Buchdunger, E.2
Zimmermann, J.3
Matter, A.4
-
5
-
-
80755125575
-
Comprehensive analysis of kinase inhibitor selectivity
-
Davis MI, Hunt JP, Herrgard S, Ciceri P, Wodicka LM, et al. (2011) Comprehensive analysis of kinase inhibitor selectivity. Nat Biotech 29: 1046-1051.
-
(2011)
Nat Biotech
, vol.29
, pp. 1046-1051
-
-
Davis, M.I.1
Hunt, J.P.2
Herrgard, S.3
Ciceri, P.4
Wodicka, L.M.5
-
6
-
-
0036682301
-
Crystal structures of the kinase domain of c-Abl in complex with the small molecule inhibitors PD173955 and imatinib (STI-571)
-
Nagar B, Bornmann WG, Pellicena P, Schindler T, Veach DR, et al. (2002) Crystal Structures of the Kinase Domain of c-Abl in Complex with the Small Molecule Inhibitors PD173955 and Imatinib (STI-571). Cancer Research 62: 4236-4243.
-
(2002)
Cancer Research
, vol.62
, pp. 4236-4243
-
-
Nagar, B.1
Bornmann, W.G.2
Pellicena, P.3
Schindler, T.4
Veach, D.R.5
-
7
-
-
33847659183
-
C-Src binds to the cancer drug imatinib with an inactive Abl/c-Kit conformation and a distributed thermodynamic penalty
-
Seeliger MA, Nagar B, Frank F, Cao X, Henderson MN, et al. (2007) c-Src binds to the cancer drug imatinib with an inactive Abl/c-Kit conformation and a distributed thermodynamic penalty. Structure 15: 299-311.
-
(2007)
Structure
, vol.15
, pp. 299-311
-
-
Seeliger, M.A.1
Nagar, B.2
Frank, F.3
Cao, X.4
Henderson, M.N.5
-
8
-
-
39749162787
-
Classifying protein kinase structures guides use of ligand-selectivity profiles to predict inactive conformations: Structure of lck/imatinib complex
-
Jacobs MD, Caron PR, Hare BJ (2008) Classifying protein kinase structures guides use of ligand-selectivity profiles to predict inactive conformations: Structure of lck/imatinib complex. Proteins: Structure, Function, and Bioinformatics 70: 1451-1460.
-
(2008)
Proteins: Structure, Function, and Bioinformatics
, vol.70
, pp. 1451-1460
-
-
Jacobs, M.D.1
Caron, P.R.2
Hare, B.J.3
-
9
-
-
77951689893
-
Analysis of imatinib and sorafenib binding to p38α compared with c-Abl and b-Raf provides structural insights for understanding the selectivity of inhibitors targeting the DFG-Out form of protein kinases
-
Namboodiri HV, Bukhtiyarova M, Ramcharan J, Karpusas M, Lee Y, et al. (2010) Analysis of Imatinib and Sorafenib Binding to p38α Compared with c-Abl and b-Raf Provides Structural Insights for Understanding the Selectivity of Inhibitors Targeting the DFG-Out Form of Protein Kinases. Biochemistry 49: 3611-3618.
-
(2010)
Biochemistry
, vol.49
, pp. 3611-3618
-
-
Namboodiri, H.V.1
Bukhtiyarova, M.2
Ramcharan, J.3
Karpusas, M.4
Lee, Y.5
-
10
-
-
51849144627
-
Knowledge based prediction of ligand binding modes and rational inhibitor design for kinase drug discovery
-
Ghose AK, Herbertz T, Pippin DA, Salvino JM, Mallamo JP (2008) Knowledge Based Prediction of Ligand Binding Modes and Rational Inhibitor Design for Kinase Drug Discovery. Journal of Medicinal Chemistry 51: 5149-5171.
-
(2008)
Journal of Medicinal Chemistry
, vol.51
, pp. 5149-5171
-
-
Ghose, A.K.1
Herbertz, T.2
Pippin, D.A.3
Salvino, J.M.4
Mallamo, J.P.5
-
11
-
-
58149102648
-
Type-II kinase inhibitor docking, screening, and profiling using modified structures of active kinase states
-
Kufareva I, Abagyan R (2008) Type-II Kinase Inhibitor Docking, Screening, and Profiling Using Modified Structures of Active Kinase States. Journal of Medicinal Chemistry 51: 7921-7932.
-
(2008)
Journal of Medicinal Chemistry
, vol.51
, pp. 7921-7932
-
-
Kufareva, I.1
Abagyan, R.2
-
12
-
-
33745298429
-
Rational design of inhibitors that bind to inactive kinase conformations
-
Liu Y, Gray NS (2006) Rational design of inhibitors that bind to inactive kinase conformations. Nat Chem Biol 2: 358-364.
-
(2006)
Nat Chem Biol
, vol.2
, pp. 358-364
-
-
Liu, Y.1
Gray, N.S.2
-
14
-
-
53549104402
-
Activation of tyrosine kinases by mutation of the gatekeeper threonine
-
Azam M, Seeliger MA, Gray NS, Kuriyan J, Daley GQ (2008) Activation of tyrosine kinases by mutation of the gatekeeper threonine. Nat Struct Mol Biol 15: 1109-1118.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 1109-1118
-
-
Azam, M.1
Seeliger, M.A.2
Gray, N.S.3
Kuriyan, J.4
Daley, G.Q.5
-
15
-
-
64349099558
-
Kinase domain mutations in cancer: Implications for small molecule drug design strategies
-
Bikker JA, Brooijmans N, Wissner A, Mansour TS (2009) Kinase domain mutations in cancer: implications for small molecule drug design strategies. J Med Chem 52: 1493-1509.
-
(2009)
J Med Chem
, vol.52
, pp. 1493-1509
-
-
Bikker, J.A.1
Brooijmans, N.2
Wissner, A.3
Mansour, T.S.4
-
16
-
-
33846228789
-
Contribution of ABL kinase domain mutations to imatinib resistance in different subsets of Philadelphia-positive patients: By the GIMEMA working party on chronic myeloid leukemia
-
Soverini S (2006) Contribution of ABL kinase domain mutations to imatinib resistance in different subsets of Philadelphia-positive patients: by the GIMEMA working party on Chronic Myeloid Leukemia. Clin Cancer Res 12: 7374-7379.
-
(2006)
Clin Cancer Res
, vol.12
, pp. 7374-7379
-
-
Soverini, S.1
-
17
-
-
77956696835
-
Safety and efficacy of INCB018424, a JAK1 and JAK2 inhibitor, in myelofibrosis
-
Verstovsek S, Kantarjian H, Mesa RA, Pardanani AD, Cortes-Franco J, et al. (2010) Safety and Efficacy of INCB018424, a JAK1 and JAK2 Inhibitor, in Myelofibrosis. New England Journal of Medicine 363: 1117-1127.
-
(2010)
New England Journal of Medicine
, vol.363
, pp. 1117-1127
-
-
Verstovsek, S.1
Kantarjian, H.2
Mesa, R.A.3
Pardanani, A.D.4
Cortes-Franco, J.5
-
18
-
-
77950684805
-
Preclinical characterization of the selective JAK1/2 inhibitor INCB018424: Therapeutic implications for the treatment of myeloproliferative neoplasms
-
Quintás-Cardama A, Vaddi K, Liu P, Manshouri T, Li J, et al. (2010) Preclinical characterization of the selective JAK1/2 inhibitor INCB018424: therapeutic implications for the treatment of myeloproliferative neoplasms. Blood 115: 3109-3117.
-
(2010)
Blood
, vol.115
, pp. 3109-3117
-
-
Quintás-Cardama, A.1
Vaddi, K.2
Liu, P.3
Manshouri, T.4
Li, J.5
-
19
-
-
84893778880
-
Specificity and mechanism-of-action of the JAK2 tyrosine kinase inhibitors ruxolitinib and SAR302503 (TG101348)
-
Zhou T, Georgeon S, Moser R, Moore DJ, Caflisch A, et al. (2014) Specificity and mechanism-of-action of the JAK2 tyrosine kinase inhibitors ruxolitinib and SAR302503 (TG101348). Leukemia 28: 404-407.
-
(2014)
Leukemia
, vol.28
, pp. 404-407
-
-
Zhou, T.1
Georgeon, S.2
Moser, R.3
Moore, D.J.4
Caflisch, A.5
-
20
-
-
84861780038
-
Ruxolitinib: The first FDA approved therapy for the treatment of myelofibrosis
-
Mascarenhas J, Hoffman R (2012) Ruxolitinib: The First FDA Approved Therapy for the Treatment of Myelofibrosis. Clinical Cancer Research 18: 3008-3014.
-
(2012)
Clinical Cancer Research
, vol.18
, pp. 3008-3014
-
-
Mascarenhas, J.1
Hoffman, R.2
-
21
-
-
28844458822
-
High yield bacterial expression of active c-Abl and c-Src tyrosine kinases
-
Seeliger MA (2005) High yield bacterial expression of active c-Abl and c-Src tyrosine kinases. Protein Sci 14: 3135-3139.
-
(2005)
Protein Sci
, vol.14
, pp. 3135-3139
-
-
Seeliger, M.A.1
-
22
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276: 307-326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
23
-
-
84870397179
-
DNA binding by GATA transcription factor suggests mechanisms of DNA looping and long-range gene regulation
-
Chen Y, Bates Darren L, Dey R, Chen P-H, Machado Ana Carolina D, et al. (2012) DNA Binding by GATA Transcription Factor Suggests Mechanisms of DNA Looping and Long-Range Gene Regulation. Cell Reports 2: 1197-1206.
-
(2012)
Cell Reports
, vol.2
, pp. 1197-1206
-
-
Chen, Y.1
Bates Darren, L.2
Dey, R.3
Chen, P.-H.4
Machado Ana Carolina, D.5
-
24
-
-
84884964169
-
Structure of p53 binding to the BAX response element reveals DNA unwinding and compression to accommodate base-pair insertion
-
Chen Y, Zhang X, Dantas Machado AC, Ding Y, Chen Z, et al. (2013) Structure of p53 binding to the BAX response element reveals DNA unwinding and compression to accommodate base-pair insertion. Nucleic Acids Research 41: 8368-8376.
-
(2013)
Nucleic Acids Research
, vol.41
, pp. 8368-8376
-
-
Chen, Y.1
Zhang, X.2
Dantas Machado, A.C.3
Ding, Y.4
Chen, Z.5
-
25
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
CCP4
-
CCP4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50: 760-763.
-
(1994)
Acta Crystallogr D Biol Crystallogr
, vol.50
, pp. 760-763
-
-
-
26
-
-
0033001789
-
Crystal structures of c-Src reveal features of its autoinhibitory mechanism
-
Xu W, Doshi A, Lei M, Eck MJ, Harrison SC (1999) Crystal structures of c-Src reveal features of its autoinhibitory mechanism. Mol Cell 3: 629-638.
-
(1999)
Mol Cell
, vol.3
, pp. 629-638
-
-
Xu, W.1
Doshi, A.2
Lei, M.3
Eck, M.J.4
Harrison, S.C.5
-
27
-
-
14244272868
-
PHENIX: Building new software for automated crystallographic structure determination
-
Adams PD (2002) PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr D Biol Crystallogr 58: 1948-1954.
-
(2002)
Acta Crystallogr D Biol Crystallogr
, vol.58
, pp. 1948-1954
-
-
Adams, P.D.1
-
28
-
-
84986522918
-
ICM - A new method for protein modeling and design: Applications to docking and structure prediction from the distorted native conformation
-
Abagyan R, Totrov M, Kuznetsov D (1994) ICM - A new method for protein modeling and design: Applications to docking and structure prediction from the distorted native conformation. Journal of Computational Chemistry 15: 488-506.
-
(1994)
Journal of Computational Chemistry
, vol.15
, pp. 488-506
-
-
Abagyan, R.1
Totrov, M.2
Kuznetsov, D.3
-
29
-
-
61349149899
-
Dissecting specificity in the janus kinases: The structures of JAK-Specific inhibitors complexed to the JAK1 and JAK2 protein tyrosine kinase domains
-
Williams NK, Bamert RS, Patel O, Wang C, Walden PM, et al. (2009) Dissecting Specificity in the Janus Kinases: The Structures of JAK-Specific Inhibitors Complexed to the JAK1 and JAK2 Protein Tyrosine Kinase Domains. Journal of Molecular Biology 387: 219-232.
-
(2009)
Journal of Molecular Biology
, vol.387
, pp. 219-232
-
-
Williams, N.K.1
Bamert, R.S.2
Patel, O.3
Wang, C.4
Walden, P.M.5
-
30
-
-
75249088440
-
Roll: A new algorithm for the detection of protein pockets and cavities with a rolling probe sphere
-
Yu J, Zhou Y, Tanaka I, Yao M (2010) Roll: a new algorithm for the detection of protein pockets and cavities with a rolling probe sphere. Bioinformatics 26: 46-52.
-
(2010)
Bioinformatics
, vol.26
, pp. 46-52
-
-
Yu, J.1
Zhou, Y.2
Tanaka, I.3
Yao, M.4
-
31
-
-
0028922586
-
LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
-
Wallace AC, Laskowski RA, Thornton JM (1995) LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions. Protein Engineering 8: 127-134.
-
(1995)
Protein Engineering
, vol.8
, pp. 127-134
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
-
33
-
-
33847659183
-
C-Src binds to the cancer drug imatinib with an inactive Abl/c-Kit conformation and a distributed thermodynamic penalty
-
Seeliger MA (2007) c-Src binds to the cancer drug imatinib with an inactive Abl/c-Kit conformation and a distributed thermodynamic penalty. Structure 15: 299-311.
-
(2007)
Structure
, vol.15
, pp. 299-311
-
-
Seeliger, M.A.1
|