-
1
-
-
0026343194
-
Wobble position modified nucleosides evolved to select transfer RNA codon recognition: a modified-wobble hypothesis
-
Agris, P.F. (1991) Wobble position modified nucleosides evolved to select transfer RNA codon recognition: a modified-wobble hypothesis. Biochimie 73: 1345-1349.
-
(1991)
Biochimie
, vol.73
, pp. 1345-1349
-
-
Agris, P.F.1
-
2
-
-
33846269602
-
tRNA's wobble decoding of the genome: 40 years of modification
-
Agris, P.F., Vendeix, F.A.P., and Graham, W.D. (2007) tRNA's wobble decoding of the genome: 40 years of modification. J Mol Biol 366: 1-13.
-
(2007)
J Mol Biol
, vol.366
, pp. 1-13
-
-
Agris, P.F.1
Vendeix, F.A.P.2
Graham, W.D.3
-
3
-
-
58149189877
-
GtRNAdb: a database of transfer RNA genes detected in genomic sequence
-
Chan, P.P., and Lowe, T.M. (2008) GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 37: D93-D97.
-
(2008)
Nucleic Acids Res
, vol.37
-
-
Chan, P.P.1
Lowe, T.M.2
-
4
-
-
0025683270
-
Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry
-
Crain, P.F. (1990) Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry. Methods Enzymol 193: 782-790.
-
(1990)
Methods Enzymol
, vol.193
, pp. 782-790
-
-
Crain, P.F.1
-
5
-
-
0013936167
-
Codon-anticodon pairing: the wobble hypothesis
-
Crick, F.H. (1966) Codon-anticodon pairing: the wobble hypothesis. J Mol Biol 19: 548-555.
-
(1966)
J Mol Biol
, vol.19
, pp. 548-555
-
-
Crick, F.H.1
-
6
-
-
77956521917
-
Silent mutations in sight: co-variations in tRNA abundance as a key to unravel consequences of silent mutations
-
Czech, A., Fedyunin, I., Zhang, G., and Ignatova, Z. (2010) Silent mutations in sight: co-variations in tRNA abundance as a key to unravel consequences of silent mutations. Mol Biosyst 6: 1767.
-
(2010)
Mol Biosyst
, vol.6
, pp. 1767
-
-
Czech, A.1
Fedyunin, I.2
Zhang, G.3
Ignatova, Z.4
-
7
-
-
14644396660
-
Selective charging of tRNA isoacceptors induced by amino-acid starvation
-
Dittmar, K.A., Sørensen, M.A., Elf, J., Ehrenberg, M., and Pan, T. (2005) Selective charging of tRNA isoacceptors induced by amino-acid starvation. EMBO Rep 6: 151-157.
-
(2005)
EMBO Rep
, vol.6
, pp. 151-157
-
-
Dittmar, K.A.1
Sørensen, M.A.2
Elf, J.3
Ehrenberg, M.4
Pan, T.5
-
8
-
-
33846021292
-
Tissue-specific differences in human transfer RNA expression
-
Dittmar, K.A., Goodenbour, J.M., and Pan, T. (2006) Tissue-specific differences in human transfer RNA expression. PLoS Genet 2: e221.
-
(2006)
PLoS Genet
, vol.2
-
-
Dittmar, K.A.1
Goodenbour, J.M.2
Pan, T.3
-
9
-
-
0030564828
-
Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
-
Dong, H., Nilsson, L., and Kurland, C.G. (1996) Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J Mol Biol 260: 649-663.
-
(1996)
J Mol Biol
, vol.260
, pp. 649-663
-
-
Dong, H.1
Nilsson, L.2
Kurland, C.G.3
-
10
-
-
84870152928
-
Biosynthesis and function of posttranscriptional modifications of transfer RNAs
-
El Yacoubi, B., Bailly, M., and de Crécy-Lagard, V. (2012) Biosynthesis and function of posttranscriptional modifications of transfer RNAs. Annu Rev Genet 46: 69-95.
-
(2012)
Annu Rev Genet
, vol.46
, pp. 69-95
-
-
El Yacoubi, B.1
Bailly, M.2
de Crécy-Lagard, V.3
-
11
-
-
0038179369
-
Selective charging of tRNA isoacceptors explains patterns of codon usage
-
Elf, J., Nilsson, D., Tenson, T., and Ehrenberg, M. (2003) Selective charging of tRNA isoacceptors explains patterns of codon usage. Science 300: 1718-1722.
-
(2003)
Science
, vol.300
, pp. 1718-1722
-
-
Elf, J.1
Nilsson, D.2
Tenson, T.3
Ehrenberg, M.4
-
12
-
-
77950490460
-
Membrane protein expression in Lactococcus lactis
-
Frelet-Barrand, A., Boutigny, S., and Kunji, E. (2010) Membrane protein expression in Lactococcus lactis. Methods Mol Biol 601: 67-85.
-
(2010)
Methods Mol Biol
, vol.601
, pp. 67-85
-
-
Frelet-Barrand, A.1
Boutigny, S.2
Kunji, E.3
-
13
-
-
84859420147
-
Structure of transfer RNAs: similarity and variability
-
Giegé, R., Jühling, F., Pütz, J., Stadler, P., Sauter, C., and Florentz, C. (2012) Structure of transfer RNAs: similarity and variability. Wiley Interdiscip Rev RNA 3: 37-61.
-
(2012)
Wiley Interdiscip Rev RNA
, vol.3
, pp. 37-61
-
-
Giegé, R.1
Jühling, F.2
Pütz, J.3
Stadler, P.4
Sauter, C.5
Florentz, C.6
-
14
-
-
84855703671
-
Standardized assay medium to measure Lactococcus lactis enzyme activities while mimicking intracellular conditions
-
Goel, A., Santos, F., Vos, W.M., de Teusink, B., and Molenaar, D. (2012) Standardized assay medium to measure Lactococcus lactis enzyme activities while mimicking intracellular conditions. Appl Environ Microbiol 78: 134-143.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 134-143
-
-
Goel, A.1
Santos, F.2
Vos, W.M.3
de Teusink, B.4
Molenaar, D.5
-
15
-
-
58549090911
-
Selection on codon bias
-
Hershberg, R., and Petrov, D.A. (2008) Selection on codon bias. Genetics 42: 287-299.
-
(2008)
Genetics
, vol.42
, pp. 287-299
-
-
Hershberg, R.1
Petrov, D.A.2
-
16
-
-
33846414324
-
Mass spectrometry-based detection of transfer RNAs by their signature endonuclease digestion products
-
Hossain, M., and Limbach, P.A. (2006) Mass spectrometry-based detection of transfer RNAs by their signature endonuclease digestion products. RNA 13: 295-303.
-
(2006)
RNA
, vol.13
, pp. 295-303
-
-
Hossain, M.1
Limbach, P.A.2
-
17
-
-
84871436566
-
Transfer RNA modifications: nature's combinatorial chemistry playground
-
Jackman, J.E., and Alfonzo, J.D. (2012) Transfer RNA modifications: nature's combinatorial chemistry playground. Wiley Interdiscip Rev RNA 4: 35-48.
-
(2012)
Wiley Interdiscip Rev RNA
, vol.4
, pp. 35-48
-
-
Jackman, J.E.1
Alfonzo, J.D.2
-
18
-
-
84862963791
-
Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection
-
Johansson, M., Zhang, J., and Ehrenberg, M. (2012) Genetic code translation displays a linear trade-off between efficiency and accuracy of tRNA selection. Proc Natl Acad Sci USA 109: 131-136.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 131-136
-
-
Johansson, M.1
Zhang, J.2
Ehrenberg, M.3
-
19
-
-
0032882170
-
Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis
-
Kanaya, S., Yamada, Y., Kudo, Y., and Ikemura, T. (1999) Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. Gene 238: 143-155.
-
(1999)
Gene
, vol.238
, pp. 143-155
-
-
Kanaya, S.1
Yamada, Y.2
Kudo, Y.3
Ikemura, T.4
-
20
-
-
58149199728
-
A pause for thought along the co-translational folding pathway
-
Komar, A. (2009) A pause for thought along the co-translational folding pathway. Trends Biochem Sci 34: 16-24.
-
(2009)
Trends Biochem Sci
, vol.34
, pp. 16-24
-
-
Komar, A.1
-
21
-
-
0027423649
-
A novel method for the determination of post-transcriptional modification in RNA by mass spectrometry
-
Kowalak, J.A., Pomerantz, S.C., Crain, P.F., and McCloskey, J.A. (1993) A novel method for the determination of post-transcriptional modification in RNA by mass spectrometry. Nucleic Acids Res 21: 4577-4585.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 4577-4585
-
-
Kowalak, J.A.1
Pomerantz, S.C.2
Crain, P.F.3
McCloskey, J.A.4
-
22
-
-
0037450575
-
Lactococcus lactis as host for overproduction of functional membrane proteins
-
Kunji, E.R., Slotboom, D.J., and Poolman, B. (2003) Lactococcus lactis as host for overproduction of functional membrane proteins. Biochim Biophys Acta 1610: 97-108.
-
(2003)
Biochim Biophys Acta
, vol.1610
, pp. 97-108
-
-
Kunji, E.R.1
Slotboom, D.J.2
Poolman, B.3
-
23
-
-
77954760688
-
Evolved Lactococcus lactis strains for enhanced expression of recombinant membrane proteins
-
Linares, D.M., Geertsma, E.R., and Poolman, B. (2010) Evolved Lactococcus lactis strains for enhanced expression of recombinant membrane proteins. J Mol Biol 401: 11-11.
-
(2010)
J Mol Biol
, vol.401
, pp. 11-11
-
-
Linares, D.M.1
Geertsma, E.R.2
Poolman, B.3
-
24
-
-
84875692043
-
MODOMICS: a database of RNA modification pathways - 2013 update
-
Machnicka, M.A., Milanowska, K., Osman Oglou, O., Purta, E., Kurkowska, M., Olchowik, A., etal. (2013) MODOMICS: a database of RNA modification pathways - 2013 update. Nucleic Acids Res 41: D262-D267.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Machnicka, M.A.1
Milanowska, K.2
Osman Oglou, O.3
Purta, E.4
Kurkowska, M.5
Olchowik, A.6
-
25
-
-
0017196379
-
Growth rate modulation of four aminoacyl-transfer ribonucleic acid synthetases in enteric bacteria
-
McKeever, W.G., and Neidhardt, F.C. (1976) Growth rate modulation of four aminoacyl-transfer ribonucleic acid synthetases in enteric bacteria. J Bacteriol 126: 634-645.
-
(1976)
J Bacteriol
, vol.126
, pp. 634-645
-
-
McKeever, W.G.1
Neidhardt, F.C.2
-
26
-
-
77649263055
-
Agmatidine, a modified cytidine in the anticodon of archaeal tRNA(Ile), base pairs with adenosine but not with guanosine
-
Mandal, D., Köhrer, C., Su, D., Russell, S.P., Krivos, K., Castleberry, C.M., etal. (2010) Agmatidine, a modified cytidine in the anticodon of archaeal tRNA(Ile), base pairs with adenosine but not with guanosine. Proc Natl Acad Sci USA 107: 2872-2877.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 2872-2877
-
-
Mandal, D.1
Köhrer, C.2
Su, D.3
Russell, S.P.4
Krivos, K.5
Castleberry, C.M.6
-
27
-
-
0036792830
-
tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features
-
Marck, C., and Grosjean, H. (2002) tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features. RNA 8: 1189-1232.
-
(2002)
RNA
, vol.8
, pp. 1189-1232
-
-
Marck, C.1
Grosjean, H.2
-
28
-
-
80052341041
-
The response of Lactococcus lactis to membrane protein production
-
Marreddy, R.K., Pinto, J.P.C., Wolters, J.C., Geertsma, E.R., Fusetti, F., Permentier, H.P., etal. (2011) The response of Lactococcus lactis to membrane protein production. PLoS ONE 6: e24060.
-
(2011)
PLoS ONE
, vol.6
-
-
Marreddy, R.K.1
Pinto, J.P.C.2
Wolters, J.C.3
Geertsma, E.R.4
Fusetti, F.5
Permentier, H.P.6
-
29
-
-
0343953000
-
Ribonuclease U2: cloning, production in Pichia pastoris and affinity chromatography purification of the active recombinant protein
-
Martínez-Ruiz, A., García-Ortega, L., Kao, R., Oñaderra, M., Mancheño, J.M., Davies, J., etal. (2000) Ribonuclease U2: cloning, production in Pichia pastoris and affinity chromatography purification of the active recombinant protein. FEMS Microbiol Lett 189: 165-169.
-
(2000)
FEMS Microbiol Lett
, vol.189
, pp. 165-169
-
-
Martínez-Ruiz, A.1
García-Ortega, L.2
Kao, R.3
Oñaderra, M.4
Mancheño, J.M.5
Davies, J.6
-
30
-
-
58549114677
-
Slow peptide bond formation by proline and other N-alkylamino acids in translation
-
Pavlov, M.Y., Watts, R.E., Tan, Z., Cornish, V.W., Ehrenberg, M., and Forster, A.C. (2009) Slow peptide bond formation by proline and other N-alkylamino acids in translation. Proc Natl Acad Sci USA 106: 50-54.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 50-54
-
-
Pavlov, M.Y.1
Watts, R.E.2
Tan, Z.3
Cornish, V.W.4
Ehrenberg, M.5
Forster, A.C.6
-
31
-
-
84875465521
-
Overexpression of initiator methionine tRNA leads to global reprogramming of tRNA expression and increased proliferation in human epithelial cells
-
Pavon-Eternod, M., Gomes, S., Rosner, M.R., and Pan, T. (2013) Overexpression of initiator methionine tRNA leads to global reprogramming of tRNA expression and increased proliferation in human epithelial cells. RNA 19: 461-466.
-
(2013)
RNA
, vol.19
, pp. 461-466
-
-
Pavon-Eternod, M.1
Gomes, S.2
Rosner, M.R.3
Pan, T.4
-
32
-
-
1842686227
-
Modified nucleotides in tRNA(Lys) and tRNA(Val) are important for translocation
-
Phelps, S.S., Malkiewicz, A., Agris, P.F., and Joseph, S. (2004) Modified nucleotides in tRNA(Lys) and tRNA(Val) are important for translocation. J Mol Biol 338: 439-444.
-
(2004)
J Mol Biol
, vol.338
, pp. 439-444
-
-
Phelps, S.S.1
Malkiewicz, A.2
Agris, P.F.3
Joseph, S.4
-
33
-
-
0029757175
-
Controlled gene expression systems for Lactococcus lactis with the food-grade inducer nisin
-
de Ruyter, P.G., Kuipers, O.P., and de Vos, W.M. (1996) Controlled gene expression systems for Lactococcus lactis with the food-grade inducer nisin. Appl Environ Microbiol 62: 3662-3667.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 3662-3667
-
-
de Ruyter, P.G.1
Kuipers, O.P.2
de Vos, W.M.3
-
34
-
-
79953780968
-
How mutations in tRNA distant from the anticodon affect the fidelity of decoding
-
Schmeing, T.M., Voorhees, R.M., Kelley, A.C., and Ramakrishnan, V. (2011) How mutations in tRNA distant from the anticodon affect the fidelity of decoding. Nat Struct Mol Biol 18: 432-436.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 432-436
-
-
Schmeing, T.M.1
Voorhees, R.M.2
Kelley, A.C.3
Ramakrishnan, V.4
-
35
-
-
0003729361
-
-
1st edn. Washington, DC: ASM Press. ISBN-13: 978-1555810733
-
Söll, D., and RajBhandary, U.L. (1995) TRNA: Structure, Biosynthesis and Function, 1st edn. Washington, DC: ASM Press. ISBN-13: 978-1555810733.
-
(1995)
TRNA: Structure, Biosynthesis and Function
-
-
Söll, D.1
RajBhandary, U.L.2
-
36
-
-
0026409389
-
Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate
-
Sørensen, M.A., and Pedersen, S. (1991) Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate. J Mol Biol 222: 265-280.
-
(1991)
J Mol Biol
, vol.222
, pp. 265-280
-
-
Sørensen, M.A.1
Pedersen, S.2
-
37
-
-
73849140884
-
Actobiotics as a novel method for cytokine delivery
-
Steidler, L., Rottiers, P., and Coulie, B. (2009) Actobiotics as a novel method for cytokine delivery. Ann N Y Acad Sci 1182: 135-145.
-
(2009)
Ann N Y Acad Sci
, vol.1182
, pp. 135-145
-
-
Steidler, L.1
Rottiers, P.2
Coulie, B.3
-
38
-
-
80755169463
-
Human mitochondrial tRNAs: biogenesis, function, structural aspects, and diseases
-
Suzuki, T., Nagao, A., and Suzuki, T. (2011) Human mitochondrial tRNAs: biogenesis, function, structural aspects, and diseases. Annu Rev Genet 45: 299-329.
-
(2011)
Annu Rev Genet
, vol.45
, pp. 299-329
-
-
Suzuki, T.1
Nagao, A.2
Suzuki, T.3
-
39
-
-
0021764898
-
Translation is a non-uniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains
-
Varenne, S., Buc, J., Lloubes, R., and Lazdunski, C. (1984) Translation is a non-uniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains. J Mol Biol 180: 549-576.
-
(1984)
J Mol Biol
, vol.180
, pp. 549-576
-
-
Varenne, S.1
Buc, J.2
Lloubes, R.3
Lazdunski, C.4
-
40
-
-
84884229496
-
The global identification of tRNA isoacceptors by targeted tandem mass spectrometry
-
Wetzel, C., and Limbach, P.A. (2013) The global identification of tRNA isoacceptors by targeted tandem mass spectrometry. Analyst 138: 6063-6072.
-
(2013)
Analyst
, vol.138
, pp. 6063-6072
-
-
Wetzel, C.1
Limbach, P.A.2
-
41
-
-
84884930238
-
Translational sensitivity of the Escherichia coli genome to fluctuating tRNA availability
-
Wohlgemuth, S.E., Gorochowski, T.E., and Roubos, J.A. (2013) Translational sensitivity of the Escherichia coli genome to fluctuating tRNA availability. Nucleic Acids Res 41: 8021-8033.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 8021-8033
-
-
Wohlgemuth, S.E.1
Gorochowski, T.E.2
Roubos, J.A.3
-
42
-
-
64549100262
-
Generic algorithm to predict the speed of translational elongation: implications for protein biogenesis
-
Zhang, G., and Ignatova, Z. (2009) Generic algorithm to predict the speed of translational elongation: implications for protein biogenesis. PLoS ONE 4: e5036.
-
(2009)
PLoS ONE
, vol.4
-
-
Zhang, G.1
Ignatova, Z.2
-
43
-
-
62049083910
-
Transient ribosomal attenuation coordinates protein synthesis and co-translational folding
-
Zhang, G., Hubalewska, M., and Ignatova, Z. (2009) Transient ribosomal attenuation coordinates protein synthesis and co-translational folding. Nat Struct Mol Biol 16: 274-280.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 274-280
-
-
Zhang, G.1
Hubalewska, M.2
Ignatova, Z.3
|