Microbiologic methods utilized in the MAL-ED cohort study

Clinical Infectious Diseases

Volumn 59, Issue , 2014, Pages S225-S232

  Houpt, Eric ^a   Gratz, Jean ^a   Kosek, Margaret ^b   Zaidi, Anita K M ^c   Qureshi, Shahida ^c   Kang, Gagandeep ^d   Babji, Sudhir ^d   Mason, Carl ^e   Bodhidatta, Ladaporn ^e   Samie, Amidou ^f   Bessong, Pascal ^f   Barrett, Leah ^a   Lima, Aldo ^g   Havt, Alexandre ^g   Haque, Rashidul ^h   Mondal, Dinesh ^h   Taniuchi, Mami ^a   Stroup, Suzanne ^a   McGrath, Monica ⁱ   Lang, Dennis ⁱ  

^a UNIVERSITY OF VIRGINIA   (United States)

^b JOHNS HOPKINS UNIVERSITY   (United States)

^c AGA KHAN UNIVERSITY   (Pakistan)

^d CHRISTIAN MEDICAL COLLEGE   (India)

^e ARMED FORCES RESEARCH INSTITUTE OF MEDICAL SCIENCES   (Thailand)

^f UNIVERSITY OF VENDA   (South Africa)

^g FEDERAL UNIVERSITY OF CEARÁ   (Brazil)

^h INTERNATIONAL CENTRE FOR DIARRHOEAL DISEASE RESEARCH   (Bangladesh)

ⁱ NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

culture; ELISA; enteropathogen; microscopy; PCR

Indexed keywords

ANALYTIC METHOD; ARTICLE; ASCARIS; BACTERIOLOGY; BLASTOCYSTIS HOMINIS; CAMPYLOBACTER; CANDIDA ALBICANS; COHORT ANALYSIS; COST; CRYPTOSPORIDIUM PARVUM; DISEASE ASSOCIATION; ENTAMOEBA HISTOLYTICA; ENTEROPATHOGENIC ESCHERICHIA COLI; FECES ANALYSIS; GIARDIA LAMBLIA; HUMAN; IMMUNOASSAY; INFECTIOUS DIARRHEA; INTESTINE FLORA; INTESTINE INFECTION; MALNUTRITION; MICROBIAL IDENTIFICATION; MICROBIOLOGY; MICROSCOPY; NONHUMAN; NOROVIRUS; QUALITY CONTROL; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SHIGELLA; TRICHURIS; ENTEROBACTERIACEAE INFECTIONS; ENZYME LINKED IMMUNOSORBENT ASSAY; EPIDEMIOLOGY; HEALTH CARE QUALITY; INFANT; INTESTINAL DISEASES; INTESTINAL DISEASES, PARASITIC; LONGITUDINAL STUDY; MICROBIOLOGICAL EXAMINATION; NEWBORN; POLYMERASE CHAIN REACTION; PRESCHOOL CHILD; PROCEDURES; STANDARDS;

CHILD, PRESCHOOL; ENTEROBACTERIACEAE INFECTIONS; ENZYME-LINKED IMMUNOSORBENT ASSAY; EPIDEMIOLOGIC RESEARCH DESIGN; HUMANS; INFANT; INFANT, NEWBORN; INTESTINAL DISEASES; INTESTINAL DISEASES, PARASITIC; LONGITUDINAL STUDIES; MICROBIOLOGICAL TECHNIQUES; MICROSCOPY; POLYMERASE CHAIN REACTION; QUALITY ASSURANCE, HEALTH CARE;

EID: 84906939349     PISSN: 10584838     EISSN: 15376591     Source Type: Journal    
DOI: 10.1093/cid/ciu413     Document Type: Article

References (42)

1. Kotloff KL, Blackwelder WC, Nasrin D, et al. The Global Enteric Multicenter Study (GEMS) of diarrheal disease in infants and young children in developing countries: epidemiologic and clinical methods of the case/control study. Clin Infect Dis 2012; 55(suppl 4):S232-45.
2. Huilan S, Zhen LG, Mathan MM, et al. Etiology of acute diarrhoea among children in developing countries: a multicentre study in five countries. Bull World Health Organ 1991; 69:549-55.
3. Mata L. Diarrheal disease as a cause of malnutrition. Am J Trop Med Hyg 1992; 47:16-27.
4. Dale DC, Mata LJ. Studies of diarrheal disease in Central America. XI. Intestinal bacterial flora in malnourished children with shigellosis. Am J Trop Med Hyg 1968; 17:397-403.
5. Black RE, Brown KH, Becker S. Effects of diarrhea associated with specific enteropathogens on the growth of children in rural Bangladesh. Pediatrics 1984; 73:799-805.
6. Steiner TS, Lima AA, Nataro JP, Guerrant RL. Enteroaggregative Escherichia coli produce intestinal inflammation and growth impairment and cause interleukin-8 release from intestinal epithelial cells. J Infect Dis 1998; 177:88-96.
7. Mera RM, Correa P, Fontham EE, et al. Effects of a new Helicobacter pylori infection on height and weight in Colombian children. Ann Epidemiol 2006; 16:347-51.
8. Windle HJ, Kelleher D, Crabtree JE. Childhood Helicobacter pylori infection and growth impairment in developing countries: a vicious cycle? Pediatrics 2007; 119:e754-9.
9. Thomas JE, Dale A, Bunn JE, et al. Early Helicobacter pylori colonisation: the association with growth faltering in The Gambia. Arch Dis Child 2004; 89:1149-54.
10. Lee G, Pan W, Penataro Yori P, et al. Symptomatic and asymptomatic campylobacter infections associated with reduced growth in Peruvian children. PLoS Negl Trop Dis 2013; 7:e2036.
11. Checkley W, Gilman RH, Epstein LD, et al. Asymptomatic and symptomatic cryptosporidiosis: their acute effect on weight gain in Peruvian children. Am J Epidemiol 1997; 145:156-63.
12. Guerrant DI, Moore SR, Lima AA, Patrick PD, Schorling JB, Guerrant RL. Association of early childhood diarrhea and cryptosporidiosis with impaired physical fitness and cognitive function four-seven years later in a poor urban community in northeast Brazil. Am J Trop Med Hyg 1999; 61:707-13.
13. Agnew DG, Lima AA, Newman RD, et al. Cryptosporidiosis in northeastern Brazilian children: association with increased diarrhea morbidity. J Infect Dis 1998; 177:754-60.
14. Noureldin MS, Shaltout AA, El Hamshary EM, Ali ME. Opportunistic intestinal protozoal infections in immunocompromised children. J Egypt Soc Parasitol 1999; 29:951-61.
15. Stephenson LS, Latham MC, Ottesen EA. Malnutrition and parasitic helminth infections. Parasitology 2000; 121(suppl):S23-38.
16. Tshikuka JG, Gray-Donald K, Scott M, Olela KN. Relationship of childhood protein-energy malnutrition and parasite infections in an urban African setting. Trop Med Int Health 1997; 2:374-82.
17. Freij L, Meeuwisse GW, Berg NO, Wall S, Gebre-Medhin M. Ascariasis and malnutrition. A study in urban Ethiopian children. Am J Clin Nutr 1979; 32:1545-53.
18. Nokes C, Grantham-McGregor SM, Sawyer AW, Cooper ES, Bundy DA. Parasitic helminth infection and cognitive function in school children. Proc Biol Sci 1992; 247:77-81.
19. Gupta M, Arora KL, Mithal S, Tandon BN. Effect of periodic deworming on nutritional status of ascaris-infested preschool children receiving supplementary food. Lancet 1977; 2:108-10.
20. Dickson R, Awasthi S,Williamson P, Demellweek C, Garner P. Effects of treatment for intestinal helminth infection on growth and cognitive performance in children: systematic review of randomised trials. BMJ 2000; 320:1697-701.
21. Kosek M, Guerrant RL, Kang G, et al. Assessment of environmental enteropathy in the MAL-ED cohort study: theoretical and analytic framework. Clin Infect Dis 2014; 59(suppl 4):S239-47.
22. Goto R, Panter-Brick C, Northrop-Clewes CA, Manahdhar R, Tuladhar NR. Poor intestinal permeability in mildly stunted Nepali children: associations with weaning practices and Giardia lamblia infection. Br J Nutr 2002; 88:141-9.
23. Lunn PG, Northrop-Clewes CA, Downes RM. Intestinal permeability, mucosal injury, and growth faltering in Gambian infants. Lancet 1991; 338:907-10.
24. Brewster DR, Manary MJ, Menzies IS, O'Loughlin EV, Henry RL. Intestinal permeability in kwashiorkor. Arch Dis Child 1997; 76:236-41.
25. Sullivan PB, Lunn PG, Northrop-Clewes CA, Farthing MJ. Parasitic infection of the gut and protein-losing enteropathy. J Pediatr Gastroenterol Nutr 1992; 15:404-7.
26. Murray PR, Baron EJ. Manual of clinical microbiology. Washington, DC: ASM Press, 2007.
27. Galbadage T, Jiang ZD, DuPont HL. Improvement in detection of enterotoxigenic Escherichia coli in patients with travelers' diarrhea by increasing the number of E. coli colonies tested. Am J Trop Med Hyg 2009; 80:20-3.
28. Barletta F, Ochoa TJ, Ecker L, Gil AI, Lanata CF, Cleary TG. Validation of five-colony pool analysis using multiplex real-time PCR for detection of diarrheagenic Escherichia coli. J Clin Microbiol 2009; 47:1915-7.
29. Nguyen TV, Le Van P, Le Huy C, Gia KN,Weintraub A. Detection and characterization of diarrheagenic Escherichia coli from young children in Hanoi, Vietnam. J Clin Microbiol 2005; 43:755-60.
30. Panchalingam S, Antonio M, Hossain A, et al. Diagnostic microbiologic methods in the GEMS-1 case/control study. Clin Infect Dis 2012; 55(suppl 4):S294-302.
31. Cebula TA, Payne WL, Feng P. Simultaneous identification of strains of Escherichia coli serotype O157:H7 and their Shiga-like toxin type by mismatch amplification mutation assay-multiplex PCR. J Clin Microbiol 1995; 33:248-50.
32. Taniuchi M, Walters CC, Gratz J, et al. Development of a multiplex polymerase chain reaction assay for diarrheagenic Escherichia coli and Shigella spp. and its evaluation on colonies, culture broths, and stool. Diagn Microbiol Infect Dis 2012; 73:121-8.
33. Steinsland H, Valentiner-Branth P, Perch M, et al. Enterotoxigenic Escherichia coli infections and diarrhea in a cohort of young children in Guinea-Bissau. J Infect Dis 2002; 186:1740-7.
34. Tolcin R, LaSalvia MM, Kirkley BA, Vetter EA, Cockerill FR, Procop GW. Evaluation of the Alexon-Trend ProSpecT Campylobacter microplate assay. J Clin Microbiol 2000; 38:3853-5.
35. Platts-Mills JA, Liu J, Gratz J, et al. Campylobacter detection and significance in stool by culture, enzyme immunoassay, and PCR in developing country settings. J Clin Microbiol 2014; 52:1074-80.
36. Garcia LS, Shimizu RY. Evaluation of nine immunoassay kits (enzyme immunoassay and direct fluorescence) for detection of Giardia lamblia and Cryptosporidium parvum in human fecal specimens. J Clin Microbiol 1997; 35:1526-9.
37. Okitsu-Negishi S, Okame M, Shimizu Y, et al. Detection of norovirus antigens from recombinant virus-like particles and stool samples by a commercial norovirus enzyme-linked immunosorbent assay kit. J Clin Microbiol 2006; 44:3784-6.
38. Burton-MacLeod JA, Kane EM, Beard RS, Hadley LA, Glass RI, Ando T. Evaluation and comparison of two commercial enzymelinked immunosorbent assay kits for detection of antigenically diverse human noroviruses in stool samples. J Clin Microbiol 2004; 42: 2587-95.
39. Costantini V, Grenz L, Fritzinger A, et al. Diagnostic accuracy and analytical sensitivity of IDEIA norovirus assay for routine screening of human norovirus. J Clin Microbiol 2010; 48:2770-8.
40. Phillips G, Lopman B, Tam CC, Iturriza-Gomara M, Brown D, Gray J. Diagnosing norovirus-associated infectious intestinal disease using viral load. BMC Infect Dis 2009; 9:63.
41. Kageyama T, Kojima S, Shinohara M, et al. Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR. J Clin Microbiol 2003; 41:1548-57.
42. Platts-Mills JA, McCormick BJJ, Kosek M, Pan W, Checkley W, Houpt ER. Methods of analysis of enteropathogen infection in the MAL-ED cohort study. Clin Infect Dis 2014; 59(suppl 4): S233-8.