Y-SNP analysis versus Y-Haplogroup Predictor in the Slovak population

Anthropologischer Anzeiger

Volumn 71, Issue 3, 2014, Pages 275-285

  Petrejčíková, Eva ^a   Čarnogurská, Jana ^a   Hronská, Danica ^a   Bernasovská, Jarmila ^a   Boroňová, Iveta ^a   Gabriková, Dana ^a   Bôžiková, Alexandra ^a   Mačeková, Soňa ^a  

^a UNIVERSITY OF PRE OV   (Slovakia)

Author keywords

Haplogroup; Prediction; Slovak population; SNP analysis; Y chromosomal polymorphisms

Indexed keywords

ARTICLE; GENOTYPING TECHNIQUE; HAPLOTYPE; HUMAN; MALE; PHYSICAL ANTHROPOLOGY; POPULATION GENETICS; SINGLE NUCLEOTIDE POLYMORPHISM; SLOVAKIA; Y CHROMOSOME;

ANTHROPOLOGY, PHYSICAL; CHROMOSOMES, HUMAN, Y; GENETICS, POPULATION; GENOTYPING TECHNIQUES; HAPLOTYPES; HUMANS; MALE; POLYMORPHISM, SINGLE NUCLEOTIDE; SLOVAKIA;

EID: 84906931697     PISSN: 00035548     EISSN: None     Source Type: Journal    
DOI: 10.1127/0003-5548/2014/0368     Document Type: Article

References (16)

1. Athey, W.T. (2006): Haplogroup prediction from Y-STR values using a Bayesian-allelefrequency approach. - J. Genet. Genael. 2, 34-39. Haplogroup Predictor online: http://www.hprg.com/hapest5/(20.4.2013).
2. Brion, M., Sanchez, J.J, Balogh, K., Thacker, C., Blanco-Verea, A., Børsting, C., Stradmann-Bellinghausen, B., Bogus, M., Syndercombe-Court, D., Schneider, P.M., Carracedo, A. & Morling, N. (2005): Introduction of a single nucleotide polymorphism-based "Major Y-chromosome haplogroup typing kit" suitable for predicting the geographic origin of male lineages. - Electrophoresis 26 (23), 4411-4420. (Pubitemid 41819564)
3. Cullen, J.: World Haplogroup & Haplo-I Subclade Predictor. Available online: http://members.bex.net/jtcullen515/haplotest.htm (22.4.2013).
4. Luca, F., Di Giacomo, F., Benincasa, T., Popa, L.O., Banyko, J., Kracmarova, A., Malaspina, P., Novelletto, A. & Brdicka, R. (2006): Y-chromosomal variation in the Czech Republic. - Am. J. Phys. Anthropol. 132 (1), 132-139. (Pubitemid 46025619)
5. Mielnik-Sikorska, M., Daca, P., Wózniak, M., Malyarchuk, B.A., Bednarek, J., Dobosz, T. & Grzybowski, T. (2013): Genetic data from Y chromosome STR and SNP loci in Ukrainian population. - Forensic Sci. Int. Genet. 7 (1), 200-203.
6. Muzzio, M., Ramallo, V., Motti, J.M.B., Santos, M.R., Camelo, J.S.L. & Bailliet, G. (2011): Software for Y-haplogroup predictions: a word of caution. - Int. J. Legal Med. 125, 143-147.
7. Nei, M. & Tajima, F. (1981): DNA polymorphism detectable by restriction endonucleases. - Genetics 97 (1), 145-163.
8. Núñez, C., Geppert, M., Baeta, M., Roewer, L. & Jarreta, B.M. (2012): Y chromosome haplogroup diversity in a Mestizo population of Nicaragua. - Forensic Sci. Int. Genet. 6 (6), 192-195.
9. Pamjav, H., Zalán, A., Béres, J., Nagy, M. & Chang, Y.M. (2011): Genetic structure of the paternal lineage of the Roma. - Am. J. Phys. Antropol. 145, 21-29.
10. Peričić, M., Lauc, L.B., Klarić, I.M. Rootsi, S., Janićijevic, B., Rudan, I., Terzić, R., Č olak, I., Kvesić, A., Popović, D., Šijački, A., Behluli, I., Dordević, D., Efremovska, L., Dorde, D.B., Stefanović, B.D., Villems, R. & Rudan, P. (2005): High-Resolution Phylogenetic Analysis of Southeastern Europe Traces Major Episodes of Paternal Gene Flow Among Slavic Populations. - Mol. Biol. Evol. 22 (10), 1964-1975. (Pubitemid 41298064)
11. Petrejčíková, E., Soták, M., Bernasovská, J., Bernasovský, I., R?ebaǎ, K., Sovičová, A., Boroňová, I., Bôž iková, A., Gabriková, D., Švíčková, P., Mačeková, S., Č arnogurská, J., Lohaj, R. & Vlček, D. (2011): Allele frequencies and population data for 11 Y-chromosome STRs in samples from Eastern Slovakia. - Forensic Sci. Int. Genet. 5 (3), 53-62.
12. Regueiro, M., Rivera, L., Damnjanovic, T., Lukovic, L., Milasin, J. & Herrera, R.J. (2013): High levels of Paleolithic Y-chromosome lineages characterize Serbia. - Gene 498 (1), 59-67.
13. Underhill, P.A., Myres, N.M., Rootsi, S., Metspalu, M., Zhivotovsky, L.A., King, R.J., Lin, A.A., Chow, Ch. - E.T., Semino, O., Battaglia, V., Kutuev, I., Järve, M., Chaubey, G., Ayub, Q., Mohyuddin, A., Mehdi, S.Q., Sengupta, S, Rogaev, E.I., Khusnutdinova, E.K., Pshenichnov, A., Balanovsky, O., Balanovska, E., Jeran, N., Augustin, D.H., Baldovic,M., Herrera, R.J., Thangaraj, K., Singh, V., Singh, L., Majumder, P., Rudan, P., Primorac, D., Villems, R. & Kivisild, T. (2010): Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a. - Eur. J. Hum. Genet. 18 (4), 479-484.
14. Wiik, K. (2008): Where did European men come from?-J. Genet. Geneal. 4, 35-85.
15. Y-DNA haplogroup tree [online] (2010). In: International Society of Genetic Genealogy. Available online: http://www.org
16. YPredictor by Vadim Urasin v1.5.0 Available online: http://predictor. ydna.ru/(25.4.2013).