Identification of a novel nidovirus in an outbreak of fatal respiratory disease in ball pythons (Python regius)

Virology Journal

Volumn 11, Issue 1, 2014, Pages

  Uccellini, Lorenzo ^a   Ossiboff, Robert J ^b,c   De Matos, Ricardo Ec ^b   Morrisey, James K ^b   Petrosov, Alexandra ^a   Navarrete Macias, Isamara ^a   Jain, Komal ^a   Hicks, Allison L ^a   Buckles, Elizabeth L ^b   Tokarz, Rafal ^a   McAloose, Denise ^c   Lipkin, Walter Ian ^a  

^a Center for Infection and Immunity Mailman School of Public Health Columbia University ^*  (United States)

^b Department of Obstetrics Gynecology   (United States)

^c WILDLIFE CONSERVATION SOCIETY   (United States)

Author keywords

Nidovirales; Pneumonia; Reptile; Snake

Indexed keywords

AMINO ACID; POLYPROTEIN; VIRUS RNA;

AMINO ACID SUBSTITUTION; ANIMAL TISSUE; ARTERIVIRUS; ARTICLE; BACTERIAL PNEUMONIA; CONTROLLED STUDY; EPIDEMIC; EQUINE VIRAL ARTERITIS VIRUS; ESOPHAGITIS; ESOPHAGUS; FEMALE; HIGH THROUGHPUT SEQUENCING; IN SITU HYBRIDIZATION; LACTIC DEHYDROGENASE TOGAVIRUS; LIVER; LUNG; NEW SPECIES; NIDOVIRALES; NIDOVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PIMEPHALES PROMELAS; PNEUMONIA; POLYMERASE CHAIN REACTION; PYTHON REGIUS; RESPIRATORY TRACT DISEASE; SNAKE; SPLEEN; TRACHEITIS; VIRUS IDENTIFICATION; ANIMAL; ANIMAL DISEASES; BOIDAE; CLASSIFICATION; DNA SEQUENCE; GENETICS; MALE; MOLECULAR GENETICS; NIDOVIRALES INFECTION; PATHOLOGY; PHYLOGENY; VETERINARY; VIROLOGY;

NIDOVIRALES; PYTHON REGIUS; REPTILIA;

ANIMAL DISEASES; ANIMALS; BOIDAE; DISEASE OUTBREAKS; FEMALE; MALE; MOLECULAR SEQUENCE DATA; NIDOVIRALES; NIDOVIRALES INFECTIONS; PHYLOGENY; RESPIRATORY TRACT DISEASES; RNA, VIRAL; SEQUENCE ANALYSIS, DNA;

EID: 84906927573     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-11-144     Document Type: Article

References (24)

1. Nidovirales: a new order comprising Coronaviridae and Arteriviridae. Cavanagh D, Arch Virol 1997 142 629 633 9349308
2. Gill-associated virus of Penaeus monodon prawns: an invertebrate virus with ORF1a and ORF1b genes related to arteri- and coronaviruses. Cowley JA, Dimmock CM, Spann KM, Walker PJ, J Gen Virol 2000 81 1473 1484 10811931
3. Mesoniviridae: a proposed new family in the order Nidovirales formed by a single species of mosquito-borne viruses. Lauber C, Ziebuhr J, Junglen S, Drosten C, Zirkel F, Nga PT, Morita K, Snijder EJ, Gorbalenya AE, Arch Virol 2012 157 1623 1628 10.1007/s00705-012-1295-x 22527862
4. The coronaviruslike superfamily. Snijder EJ, Horzinek MC, Spaan WJ, Adv Exp Med Biol 1993 342 235 244 8209737
5. Gill-associated nidovirus of Penaeus monodon prawns transcribes 3-coterminal subgenomic mRNAs that do not possess 5-leader sequences. Cowley JA, Dimmock CM, Walker PJ, J Gen Virol 2002 83 927 935 11907343
6. Nidovirus transcription: how to make sense.? Pasternak AO, Spaan WJ, Snijder EJ, J Gen Virol 2006 87 1403 1421 10.1099/vir.0.81611-0 16690906
7. RNA transcription analysis and completion of the genome sequence of yellow head nidovirus. Sittidilokratna N, Dangtip S, Cowley JA, Walker PJ, Virus Res 2008 136 157 165 10.1016/j.virusres.2008.05.008 18582978
8. Walker PJ, Bonami JR, Boonsaeng V, Chang PS, Cowley JA, Enjuanes L, Flegel TW, Lightner DV, Loh PC, Snijder EJ, Tang K, Virus Taxonomy: Classification and Nomenclature of Viruses. Eighth Report of the International Committee for Taxonomy of Viruses San Diego: Academic, Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA, 2005 937 979
9. An Introduction to Nidoviruses. Siddell S, Snijder EJ, Nidoviruses Washington, DC: American Society for Microbiology, Perlman S, Gallagher T, Snijder EJ, 2008 1 13
10. In vivo and in vitro detection of canine distemper virus nucleoprotein gene with digoxigenin-labelled RNA, double-stranded DNA probes and oligonucleotides by in situ hybridization. Gaedke K, Zurbriggen A, Baumgärtner W, Zentralblatt fur Veterinarmedizin Reihe B J Vet Med 1997 44 329 340
11. An insect nidovirus emerging from a primary tropical rainforest. Zirkel F, Kurth A, Quan PL, Briese T, Ellerbrok H, Pauli G, Leendertz FH, Lipkin WI, Ziebuhr J, Drosten C, Junglen S, mBio 2011 2 3 00077 11 21673192
12. Viruses Infecting Reptiles. Marschang RE, Viruses 2011 3 11 2087 2126 Published online 2011 November 1. doi: 10.3390/v3112087 22163336
13. Conjunctivitis, tracheitis, and pneumonia associated with herpesvirus infection in green sea turtles. Jacobson ER, Gaskin JM, Roelke M, Greiner EC, Allen J, J Am Vet Med Assoc 1986 189 9 1020 1023 2851569
14. Respiratory and pharyngo-esophageal iridovirus infection in a gopher tortoise (Gopherus polyphemus). Westhouse RA, Jacobson ER, Harris RK, Winter KR, Homer BL, J Wildl Dis 1996 32 4 682 686 10.7589/0090-3558-32.4.682 9359071
15. Adeno-like virus in esophageal and tracheal mucosa of a Jackson's chameleon (Chamaeleo jacksoni). Jacobson ER, Gardiner CH, Vet Pathol 1990 27 3 210 212 10.1177/030098589002700313 2162092
16. From Viruses and Viral Diseases of Reptiles. Jacobson ER, Infectious Diseases and Pathology in Reptiles: Color Atlas and Text Boca Raton: CRC Press/Taylor & Frances Group 1 2007 413
17. Pulmonary lesions in experimental ophidian paramyxovirus pneumonia of Aruba Island rattlesnakes, Crotalus unicolor. Jacobson ER, Adams HP, Geisbert TW, Tucker SJ, Hall BJ, Homer BL, Vet Pathol 1997 34 5 450 459 10.1177/030098589703400509 9381656
18. Isolation and experimental transmission of a reovirus pathogenic in ratsnakes (Elaphe species). Lamirande EW, Nichols DK, Owens JW, Gaskin JM, Jacobson ER, Virus Res 1999 63 1-2 135 141 10509725
19. Immunoperoxidase detection of ophidian paramyxovirus in snake lung using a polyclonal antibody. Homer BL, Sundberg JP, Gaskin JM, Schumacher J, Jacobson ER, J Vet Diagn Invest 1995 7 1 72 77 10.1177/104063879500700111 7779968
20. Immunohistochemical detection of ophidian paramyxovirus in snakes in the Canary Islands. Orós J, Sicilia J, Torrent A, Castro P, Déniz S, Arencibia A, Jacobson ER, Homer BL, Vet Rec 2001 149 1 21 23 10.1136/vr.149.1.21 11486771
21. Molecular diagnosis of paramyxovirus infection in snakes using reverse transcriptase-polymerase chain reaction and complementary deoxyribonucleic acid:ribonucleic acid in situ hybridisation. Sand MA, Latimer KS, Gregory CR, Rakich PM, Jacobson ER, Pennick KE, J Vet Diagn Invest 2004 16 442 448 10.1177/104063870401600514 15460330
22. Feline calicivirus. Radford AD, Coyne KP, Dawson S, Porter CJ, Gaskell RM, Vet Res 2007 38 2 319 335 Epub 2007 Feb 13 10.1051/vetres:2006056 17296159
23. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, Mol Biol Evol 2011 28 2731 2739 10.1093/molbev/msr121 21546353
24. Genetic analysis of a novel nidovirus from fathead minnows. Batts WN, Goodwin AE, Winton JR, J Gen Virol 2012 93 1247 1252 10.1099/vir.0.041210-0 22422065