Comparative Cellular Analysis of Pathogenic Fungi with a Disease Incidence in Brachypodium distachyon and Miscanthus x giganteus

Bioenergy Research

Volumn 7, Issue 3, 2014, Pages 958-973

  Falter, Christian ^a   Voigt, Christian A ^a  

^a UNIVERSITY OF HAMBURG   (Germany)

Author keywords

Biomass; Energy crop; Fungal pathogens; Model grass; Pathogenicity; Pathosystem

Indexed keywords

ASSAYS; BIOMASS; CROPS; CULTIVATION; DIAGNOSIS; PATHOGENS;

BIOMASS PRODUCTIONS; ENERGY CROPS; FUNGAL PATHOGEN; MICROSCOPIC ANALYSIS; MISCANTHUS X GIGANTEUS; PATHOGENICITY; PATHOSYSTEMS; PENETRATION PROCESS;

FUNGI;

ARUNDO DONAX; BRACHYPODIUM; BRACHYPODIUM DISTACHYON; FUNGI; MISCANTHUS X GIGANTEUS; POACEAE;

EID: 84906784005     PISSN: 19391234     EISSN: 19391242     Source Type: Journal    
DOI: 10.1007/s12155-014-9439-3     Document Type: Article

References (82)

1. Finer M, Jenkins CN, Pimm SL, Keane B, Ross C (2008) Oil and gas projects in the Western Amazon: threats to wilderness, biodiversity, and indigenous peoples. Plos One 3(8): e2932. doi: 10. 1371/journal. pone. 0002932.
2. Jernelov A (2010) The threats from oil spills: now, then, and in the future. Ambio 39(5-6): 353-366.
3. Sojinu OS, Wang JZ, Sonibare OO, Zeng EY (2010) Polycyclic aromatic hydrocarbons in sediments and soils from oil exploration areas of the Niger Delta, Nigeria. J Hazard Mater 174(1-3): 641-647. doi: 10. 1016/j. jhazmat. 2009. 09. 099.
4. Sims RE, Mabee W, Saddler JN, Taylor M (2010) An overview of second generation biofuel technologies. Bioresource Technol 101(6): 1570-1580. doi: 10. 1016/j. biortech. 2009. 11. 046.
5. Somerville C, Youngs H, Taylor C, Davis SC, Long SP (2010) Feedstocks for lignocellulosic biofuels. Science 329(5993): 790-792. doi: 10. 1126/science. 1189268.
6. Dale VH, Kline KL, Wright LL, Perlack RD, Downing M, Graham RL (2011) Interactions among bioenergy feedstock choices, landscape dynamics, and land use. Ecol Appl 21(4): 1039-1054.
7. Hohenstein WG, Wright LL (1994) Biomass energy production in the United States: an overview. Biomass Bioenerg 6(3): 161-173. doi: 10. 1016/0961-9534(94)90073-6.
8. 2 atmospheric concentrations. Glob Change Biol Bioenerg 2(2): 79-88. doi: 10. 1111/j. 1757-1707. 2010. 01042. x.
9. Roth AM, Sample DW, Ribic CA, Paine L, Undersander DJ, Bartelt GA (2005) Grassland bird response to harvesting switchgrass as a biomass energy crop. Biomass Bioenerg 28(5): 490-498. doi: 10. 1016/j. biombioe. 2004. 11. 001.
10. 4 grasses for cellulosic biofuel production. Front Plant Sci 4: 107. doi: 10. 3389/fpls. 2013. 00107.
11. Dohleman FG, Long SP (2009) More productive than maize in the Midwest: How does Miscanthus do it? Plant Physiol 150(4): 2104-2115. doi: 10. 1104/pp. 109. 139162.
12. Heaton EA, Dohleman FG, Long SP (2008) Meeting US biofuel goals with less land: the potential of Miscanthus. Glob Change Biol 14(9): 2000-2014. doi: 10. 1111/j. 1365-2486. 2008. 01662. x.
13. Hulle Sv, Waes Cv, Vliegher Ad, Baert J, Muylle H (2012) Comparison of dry matter yield of lignocellulosic perennial energy crops in a long-term Belgian field experiment. In: Grassland Science in Europe, Volume 17, 2012 Polskie Towarzystwo Łakarskie (Polish Grassland Society), pp 499-501.
14. Lewandowski I, Clifton-Brown JC, Scurlock JMO, Huisman W (2000) Miscanthus: European experience with a novel energy crop. Biomass Bioenerg 19(4): 209-227. doi: 10. 1016/s0961-9534(00)00032-5.
15. Lewandowski I (1998) Propagation method as an important factor in the growth and development of Miscanthus x giganteus. Ind Crop Prod 8: 229-245.
16. Ullstrup AJ (1972) The impacts of the Southern corn leaf blight epidemics of 1970-1971. Annu Rev Phytopathol 10(1): 37-50. doi: 10. 1146/annurev. py. 10. 090172. 000345.
17. Agindotan BO, Ahonsi MO, Gray ME, Bradley CA (2010) Potential viral threats to Miscanthus x giganteus and switchgrass production for bioenergy in the United States. Phytopathol 100: S3.
18. Agindotan BO, Okanu N, Oladeinde A, Voigt T, Long S, Gray M, Bradley C (2013) Detection of Switchgrass mosaic virus in Miscanthus and other grasses. Can J Plant Pathol 35(1): 81-86.
19. Christian DG, Lamptey JNL, Forde SMD, Plumb RT (1994) First report of barley yellow dwarf luteovirus on Miscanthus in the United Kingdom. Eur J Plant Pathol 100(2): 167-170. doi: 10. 1007/bf01876249.
20. Pusz W, Pla{ogonek}kaskowska E (2010) Stagonospora tainanensis-new pathogen of Miscanthus (Miscanthus x giganteus) in Poland. Phytopathologia 57: 39-43.
21. Oliver RP, Friesen TL, Faris JD, Solomon PS (2012) Stagonospora nodorum: from pathology to genomics and host resistance. Annu Rev Phytopathol 50(1): 23-43. doi: 10. 1146/annurev-phyto-081211-173019.
22. Beccari G, Covarelli L, Balmas V, Tosi L (2010) First report of Miscanthus × giganteus rhizome rot caused by Fusarium avenaceum, Fusarium oxysporum and Mucor hiemalis. Australas Plant Dis Notes 5(1): 28-29. doi: 10. 1071/dn10011.
23. Scauflaire J, Gourgue M, Foucart G, Renard F, Vandeputte F, Munaut F (2013) Fusarium miscanthi and other Fusarium species as causal agents of Miscanthus × giganteus rhizome rot. Eur J Plant Pathol 137(1): 1-3. doi: 10. 1007/s10658-013-0220-9.
24. Thinggaard K (1997) Study of the role of Fusarium in the field establishment problem of Miscanthus. Acta Agr Scand B-S P 47: 238-241.
25. Kazan K, Gardiner DM, Manners JM (2012) On the trail of a cereal killer: recent advances in Fusarium graminearum pathogenomics and host resistance. Mol Plant Pathol 13(4): 399-413. doi: 10. 1111/j. 1364-3703. 2011. 00762. x.
26. Viswanathan R, Poongothai M, Malathi P (2011) Pathogenic and molecular confirmation of Fusarium sacchari causing wilt in sugarcane. Sugar Tech 13: 68-76.
27. Ahonsi MO, Agindotan BO, Williams DW, Arundale R, Gray ME, Voigt TB, Bradley CA (2010) First report of Pithomyces chartarum causing a leaf blight of Miscanthus × giganteus in Kentucky. Plant Dis 94(4): 480-480. doi: 10. 1094/pdis-94-4-0480c.
28. Ahonsi MO, Ames KA, Gray ME, Bradley CA (2013) Biomass reducing potential and prospective fungicide control of a new leaf blight of Miscanthus × giganteus caused by Leptosphaerulina chartarum. Bioenerg Res 6(2): 737-745. doi: 10. 1007/s12155-012-9293-0.
29. Talbot NJ (1995) Having a blast: exploring the pathogenicity of Magnaporthe grisea. Trends Microbiol 3(1): 9-16.
30. Liu Z, Ellwood SR, Oliver RP, Friesen TL (2011) Pyrenophora teres: profile of an increasingly damaging barley pathogen. Mol Plant Pathol 12(1): 1-19. doi: 10. 1111/j. 1364-3703. 2010. 00649. x.
31. Bakonyi J, Aponyi I, Fischl G (1998) Diseases caused by Bipolaris sorokiniana and Drechslera tritici-repentis in Hungary. In: Proceedings of an International Workshop, El Batan, Tex. (Mexico), 9-14 Feb 1997, 1998. CIMMYT/UCL/BADC.
32. Kumar J, Hückelhoven R, Beckhove U, Nagarajan S, Kogel K-H (2001) A compromised Mlo pathway affects the response of barley to the necrotrophic fungus Bipolaris sorokiniana (teleomorph: Cochliobolus sativus) and its toxins. Phytopathol 91(2): 127-133. doi: 10. 1094/phyto. 2001. 91. 2. 127.
33. Kumar J, Schäfer P, Hückelhoven R, Langen G, Baltruschat H, Stein E, Nagarajan S, Kogel K-H (2002) Bipolaris sorokiniana, a cereal pathogen of global concern: cytological and molecular approaches towards better control. Mol Plant Pathol 3(4): 185-195. doi: 10. 1046/j. 1364-3703. 2002. 00120. x.
34. Saari EE (1998) Leaf blight diseases and associated soilborne fungal pathogens of wheat in south and southeast Asia. In: Duveiller E, Dubin HJ, Reeves J, McNab A (eds) Helminthosporium blights of wheat: spot blotch and tan spot. Mexico. CIMMYT, Mexico, D. F, pp 37-51.
35. Zhang Y, Crous PW, Schoch CL, Hyde KD (2012) Pleosporales. Fungal Divers 53(1): 1-221. doi: 10. 1007/s13225-011-0117-x.
36. Czerniawska B, Adamska I (2009) Parasitic fungi on sedges. Prog Plant Protect 49: 187-190.
37. Peraldi A, Beccari G, Steed A, Nicholson P (2011) Brachypodium distachyon: a new pathosystem to study Fusarium head blight and other Fusarium diseases of wheat. BMC Plant Biol 11 (1). doi: 10. 1186/1471-2229-11-100.
38. Routledge APM, Shelley G, Smith JV, Talbot NJ, Draper J, Mur LAJ (2004) Magnaporthe grisea interactions with the model grass Brachypodium distachyon closely resemble those with rice (Oryza sativa). Mol Plant Pathol 5(4): 253-265. doi: 10. 1111/j. 1364-3703. 2004. 00224. x.
39. Draper J, Mur LAJ, Jenkins G, Ghosh-Biswas GC, Bablak P, Hasterok R, Routledge APM (2001) Brachypodium distachyon. A new model system for functional genomics in grasses. Plant Physiol 127(4): 1539-1555. doi: 10. 1104/pp. 010196.
40. Alves SC, Worland B, Thole V, Snape JW, Bevan MW, Vain P (2009) A protocol for Agrobacterium-mediated transformation of Brachypodium distachyon community standard line Bd21. Nat Protoc 4(5): 638-649. doi: 10. 1038/nprot. 2009. 30.
41. International Brachypodium I (2010) Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463(7282): 763-768. doi: 10. 1038/nature08747.
42. Huo N, Gu YQ, Lazo GR, Vogel JP, Coleman-Derr D, Luo MC, Thilmony R, Garvin DF, Anderson OD (2006) Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics. Genome 49(9): 1099-1108. doi: 10. 1139/g06-087.
43. Solomon PS, Lee RC, Wilson TJG, Oliver RP (2004) Pathogenicity of Stagonospora nodorum requires malate synthase. Mol Microbiol 53(4): 1065-1073. doi: 10. 1111/j. 1365-2958. 2004. 04178. x.
44. Nirenberg HI (1981) A simplified method for identifying Fusarium spp. occurring on wheat. Can J Bot 59(9): 1599-1609. doi: 10. 1139/b81-217.
45. Parker D, Beckmann M, Enot DP, Overy DP, Rios ZC, Gilbert M, Talbot N, Draper J (2008) Rice blast infection of Brachypodium distachyon as a model system to study dynamic host/pathogen interactions. Nat Protoc 3(3): 435-445. doi: 10. 1038/nprot. 2007. 499.
46. Leach J, Lang BR, Yoder OC (1982) Methods for selection of mutants and in vitro culture of Cochliobolus heterostrophus. J Gen Microbiol 128(8): 1719-1729. doi: 10. 1099/00221287-128-8-1719.
47. Herth W, Schnepf E (1980) The fluorochrome, calcofluor white, binds oriented to structural polysaccharide fibrils. Protoplasma 105: 129-133.
48. Mirelman D, Galun E, Sharon N, Lotan R (1975) Inhibition of fungal growth by wheat germ agglutinin. Nature 256(5516): 414-416.
49. Chakraborty S (2013) Migrate or evolve: options for plant pathogens under climate change. Glob Change Biol 19(7): 1985-2000. doi: 10. 1111/gcb. 12205.
50. Siebold M, von Tiedemann A (2013) Effects of experimental warming on fungal disease progress in oilseed rape. Glob Change Biol 19(6): 1736-1747. doi: 10. 1111/gcb. 12180.
51. Chassot C, Buchala A, Schoonbeek HJ, Metraux JP, Lamotte O (2008) Wounding of Arabidopsis leaves causes a powerful but transient protection against Botrytis infection. Plant J 55(4): 555-567. doi: 10. 1111/j. 1365-313X. 2008. 03540. x.
52. Krishnaveni S, Muthukrishnan S, Linag GH, Wilde G, Manickam A (1999) Induction of chitinases and β-1, 3-glucanases in resistant and susceptible cultivars of sorghum in response to insect attack, fungal infection and wounding. Plant Sci 144(1): 9-16. doi: 10. 1016/S0168-9452(99)00049-7.
53. Orozco-Cardenas M, Ryan CA (1999) Hydrogen peroxide is generated systemically in plant leaves by wounding and systemin via the octadecanoid pathway. Proc Natl Acad Sci U S A 96(11): 6553-6557.
54. 2 plays different roles in determining penetration failure in three diverse plant-fungal interactions. Plant J 29(3): 257-268.
55. 2 accumulation in papillae and hypersensitive response during the barley-powdery mildew interaction. Plant J 11(6): 1187-1194. doi: 10. 1046/j. 1365-313X. 1997. 11061187. x.
56. Able AJ (2003) Role of reactive oxygen species in the response of barley to necrotrophic pathogens. Protoplasma 221(1-2): 137-143. doi: 10. 1007/s00709-002-0064-1.
57. Govrin EM, Levine A (2000) The hypersensitive response facilitates plant infection by the necrotrophic pathogen Botrytis cinerea. Curr Biol 10(13): 751-757.
58. Routledge APM, Shelley G, Smith JV, Talbot NJ, Draper J, Mur LAJ (2004) Magnaporthe grisea interactions with the model grass Brachypodium distachyon closely resemble those with rice (Oryza sativa). Mol Plant Pathol 5(4): 253-265. doi: 10. 1111/j. 1364-3703. 2004. 00224. x.
59. Han Q, Huang L, Buchenauer H, Wang C, Kang Z (2010) Cytological study of wheat spike infection by Bipolaris sorokiniana. J Phytopathol 158: 22-29.
60. Solomon PS, Wilson TJG, Rybak K, Parker K, Lowe RGT, Oliver RP (2006) Structural characterisation of the interaction between Triticum aestivum and the Dothideomycete Pathogen Stagonospora nodorum. Eur J Plant Pathol 114(3): 275-282. doi: 10. 1007/s10658-005-5768-6.
61. Horwitz BA, Condon BJ, Turgeon BG (2013) Cochliobolus heterostrophus: a dothideomycete pathogen of maize. In: Horwitz BA, Mukherjee PK, Mukherjee M, Kubicek CP (eds) Genomics of soil- and plant-associated fungi, 36th edn. Springer, Berlin Heidelberg, pp 213-228.
62. Leach J, Lang BR, Yoder OC (1982) Methods for selection of mutants and in vitro culture of Cochliobolus heterostrophus. J Gen Microbiol 128(8): 1719-1729. doi: 10. 1099/00221287-128-8-1719.
63. Jørgensen U (2010) Benefits versus risks of growing biofuel crops: the case of Miscanthus. Curr Opin Environ Sustain 3(1-2): 24-30. doi: 10. 1016/j. cosust. 2010. 12. 003.
64. Spencer JL, Raghu S (2009) Refuge or reservoir? The potential impacts of the biofuel crop Miscanthus x giganteus on a major pest of maize. Plos ONE 4(12): e8336. doi: 10. 1371/journal. pone. 0008336.
65. Davis SC, Parton WJ, Del Grosso SJ, Keough C, Marx E, Adler PR, DeLucia EH (2012) Impact of second-generation biofuel agriculture on greenhouse-gas emissions in the corn-growing regions of the US. Front Ecol Environ 10: 69-74. doi: 10. 1890/110003.
66. Pandey SC, Shukla TN (1979) Host range studies of six Helminthosporium spp. causing leaf spot diseases of sorghum. Indian J Mycol Plant Pathol 8(2): 207-208.
67. Dinoor A (1974) Role of wild and cultivated plants in the epidemiology of plant diseases in Israel. Annu Rev Phytopathol 12: 413-436.
68. Cunnell GJ (1961) Stagonospora macropycnidia sp. nov. T Brit Mycol Soc 44(1): 87-90. doi: 10. 1016/s0007-1536(61)80010-7.
69. Almgren I, Gustafsson M, Fält A-S, Lindgren H, Liljeroth E (1999) Interaction between root and leaf disease development in barley cultivars after inoculation with different isolates of Bipolaris sorokiniana. J Phytopathol 147: 331-337.
70. Boenisch MJ, Schäfer W (2011) Fusarium graminearum forms mycotoxin producing infection structures on wheat. BMC Plant Biol 11 (1). doi: 10. 1186/1471-2229-11-110.
71. Emmett RW, Parbery DG (1975) Appressoria. Annu Rev Phytopathol 13(1): 147-165. doi: 10. 1146/annurev. py. 13. 090175. 001051.
72. O'Reilly P, Downes MJ (1986) Form of survival of Septoria nodorum on symptomless winter wheat. T Brit Mycol Soc 86: 381-385.
73. Beckman PM, Payne GA (1982) External growth, penetration, and development of Cercospora zeae-maydis in corn leaves. Phytopathol 72: 810-815.
74. Mendgen K, Hahn M, Deising H (1996) Morphogenesis and mechanisms of penetration by plant pathogenic fungi. Annu Rev Phytopathol 34: 367-386. doi: 10. 1146/annurev. phyto. 34. 1. 367.
75. Garvin DF, Gu YQ, Hasterok R, Hazen SP, Jenkins G, Mockler TC, Mur LAJ, Vogel JP (2008) Development of genetic and genomic research resources for Brachypodium distachyon, a new model system for grass crop research. Crop Sci 48: 69-84. doi: 10. 2135/cropsci2007. 06. 0332tpg.
76. Weissmann S, Brutnell TP (2012) Engineering C4 photosynthetic regulatory networks. Curr Opin Biotechnol 23(3): 298-304. doi: 10. 1016/j. copbio. 2011. 12. 018.
77. Hodkinson TR, Chase MW, Takahashi C, Leitch IJ, Bennett MD, Renvoize SA (2002) The use of dna sequencing (ITS and trnL-F), AFLP, and fluorescent in situ hybridization to study allopolyploid Miscanthus (Poaceae). Am J Bot 89(2): 279-286. doi: 10. 3732/ajb. 89. 2. 279.
78. Zhao H, Yu J, You FM, Luo M, Peng J (2011) Transferability of microsatellite markers from Brachypodium distachyon to Miscanthus sinensis, a potential biomass crop. J Integr Plant Biol 53(3): 232-245. doi: 10. 1111/j. 1744-7909. 2010. 01026. x.
79. Zhao H, Wang B, He J, Yang J, Pan L, Sun D, Peng J (2013) Genetic diversity and population structure of Miscanthus sinensis germplasm in China. Plos One 8(10): e75672. doi: 10. 1371/journal. pone. 0075672.
80. O'Neill NR, Farr DF (1996) Miscanthus blight, a new foliar disease of ornamental grasses and sugarcane incited by Leptosphaeria sp. and its anamorphic state Stagonospora sp. Plant Dis 80: 980-987.
81. Miedaner T, Reinbrecht C, Schilling AG (2000) Association among aggressiveness, fungal colonization, and mycotoxin production of 26 isolates of Fusarium graminearum in winter rye head blight. J Plant Dis Prot 107: 124-134.
82. Steffensen BJ, Webster RK (1992) Pathotype diversity of Pyrenophora teres f. teres on barley. Phytopathol 82: 170-177.