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Volumn 2014, Issue , 2014, Pages

The eGenVar data management system - Cataloguing and sharing sensitive data and metadata for the life sciences

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGICAL ONTOLOGY; BIOMEDICINE; COMPUTER PROGRAM; DATA BASE; GENETIC DATABASE; INFORMATION DISSEMINATION; NOMENCLATURE; SEARCH ENGINE;

EID: 84906538219     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bau027     Document Type: Article
Times cited : (14)

References (31)
  • 1
    • 58149191270 scopus 로고    scopus 로고
    • The universal protein resource (UniProt) 2009
    • UniProt Consortium. (2009) The Universal Protein Resource (UniProt) 2009. Nucleic Acids Res., 37, D169-D174.
    • (2009) Nucleic Acids Res. , vol.37 , pp. D169-D174
  • 3
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • Dunham, I., Kundaje, A., Aldred, S.F. et al. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
    • (2012) Nature , vol.489 , pp. 57-74
    • Dunham, I.1    Kundaje, A.2    Aldred, S.F.3
  • 4
    • 84975795680 scopus 로고    scopus 로고
    • An integrated map of genetic variation from 1, 092 human genomes
    • Abecasis, G.R., Auton, A., Brooks, L.D. et al. (2012) An integrated map of genetic variation from 1, 092 human genomes. Nature, 491, 56-65.
    • (2012) Nature , vol.491 , pp. 56-65
    • Abecasis, G.R.1    Auton, A.2    Brooks, L.D.3
  • 5
    • 77951115122 scopus 로고    scopus 로고
    • International network of cancer genome projects
    • International Cancer Genome Consortium, Hudson, T.J., Anderson, W. et al. (2010) International network of cancer genome projects. Nature, 464, 993-998.
    • (2010) Nature , vol.464 , pp. 993-998
    • Hudson, T.J.1    Anderson, W.2
  • 6
    • 84865248380 scopus 로고    scopus 로고
    • Chromatin organization is a major influence on regional mutation rates in human cancer cells
    • Schuster-Bockler, B. and Lehner, B. (2012) Chromatin organization is a major influence on regional mutation rates in human cancer cells. Nature, 488, 504-507.
    • (2012) Nature , vol.488 , pp. 504-507
    • Schuster-Bockler, B.1    Lehner, B.2
  • 7
    • 84865822182 scopus 로고    scopus 로고
    • Systematic localization of common disease-associated variation in regulatory DNA
    • Maurano, M.T., Humbert, R., Rynes, E. et al. (2012) Systematic localization of common disease-associated variation in regulatory DNA. Science, 337, 1190-1195.
    • (2012) Science , vol.337 , pp. 1190-1195
    • Maurano, M.T.1    Humbert, R.2    Rynes, E.3
  • 8
    • 59149088407 scopus 로고    scopus 로고
    • Repeatability of published microarray gene expression analyses
    • Ioannidis, J.P., Allison, D.B., Ball, C.A. et al. (2009) Repeatability of published microarray gene expression analyses. Nat. Genet., 41, 149-155.
    • (2009) Nat. Genet. , vol.41 , pp. 149-155
    • Ioannidis, J.P.1    Allison, D.B.2    Ball, C.A.3
  • 9
    • 84876097557 scopus 로고    scopus 로고
    • ArrayExpress update-trends in database growth and links to data analysis tools
    • Rustici, G., Kolesnikov, N., Brandizi, M. et al. (2013) ArrayExpress update-trends in database growth and links to data analysis tools. Nucleic Acids Res., 41, D987-D990.
    • (2013) Nucleic Acids Res. , vol.41 , pp. D987-D990
    • Rustici, G.1    Kolesnikov, N.2    Brandizi, M.3
  • 10
    • 84872459720 scopus 로고    scopus 로고
    • Identifying personal genomes by surname inference
    • Gymrek, M., McGuire, A.L., Golan, D. et al. (2013) Identifying personal genomes by surname inference. Science, 339, 321-324.
    • (2013) Science , vol.339 , pp. 321-324
    • Gymrek, M.1    McGuire, A.L.2    Golan, D.3
  • 11
    • 80052999290 scopus 로고    scopus 로고
    • Assessing and managing risk when sharing aggregate genetic variant data
    • Craig, D.W., Goor, R.M., Wang, Z. et al. (2011) Assessing and managing risk when sharing aggregate genetic variant data. Nat. Rev. Genet., 12, 730-736.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 730-736
    • Craig, D.W.1    Goor, R.M.2    Wang, Z.3
  • 12
    • 80053057733 scopus 로고    scopus 로고
    • The SEEK: A platform for sharing data and models in systems biology
    • Wolstencroft, K., Owen, S., du Preez, F. et al. (2011) The SEEK: a platform for sharing data and models in systems biology. Methods Enzymol., 500, 629-655.
    • (2011) Methods Enzymol. , vol.500 , pp. 629-655
    • Wolstencroft, K.1    Owen, S.2    Du Preez, F.3
  • 13
    • 77956548952 scopus 로고    scopus 로고
    • ISA software suite: Supporting standards-compliant experimental annotation and enabling curation at the community level
    • Rocca-Serra, P., Marco, B., Eamonn, M. et al. (2010) ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level. Bioinformatics, 26, 2354-2356.
    • (2010) Bioinformatics , vol.26 , pp. 2354-2356
    • Rocca-Serra, P.1    Marco, B.2    Eamonn, M.3
  • 14
    • 45749118607 scopus 로고    scopus 로고
    • Promoting coherent minimum reporting guidelines for biological and biomedical investigations: The MIBBI project
    • Taylor, C., Field, D., Sansone, S. et al. (2008) Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat. Biotechnol., 26, 889-896.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 889-896
    • Taylor, C.1    Field, D.2    Sansone, S.3
  • 15
    • 18344396568 scopus 로고    scopus 로고
    • Minimum information about a microarray experiment (MIAME) - Toward standards for microarray data
    • Brazma, A., Hingamp, P., Quackenbush, J. et al. (2001) Minimum information about a microarray experiment (MIAME) - toward standards for microarray data. Nat. Genet., 29, 365-371.
    • (2001) Nat. Genet. , vol.29 , pp. 365-371
    • Brazma, A.1    Hingamp, P.2    Quackenbush, J.3
  • 16
    • 78651284406 scopus 로고    scopus 로고
    • ArrayExpress update - An archive of microarray and high-throughput sequencing-based functional genomics experiments
    • Helen, P., Ugis, S., Nikolay, K. et al. (2011) ArrayExpress update - an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Res., 39, D1002-D1004.
    • (2011) Nucleic Acids Res. , vol.39 , pp. D1002-D1004
    • Helen, P.1    Ugis, S.2    Nikolay, K.3
  • 17
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Goecks, J., Nekrutenko, A., Taylor, J. et al. (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11, R86.
    • (2010) Genome Biol. , vol.11 , pp. R86
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 18
    • 84882310107 scopus 로고    scopus 로고
    • The taverna workflow suite: Designing and executing workflows of web services on the desktop, web or in the cloud
    • Wolstencroft, K., Haines, R., Fellows, D. et al. (2013) The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud. Nucleic Acids Res., 41, W557-W561.
    • (2013) Nucleic Acids Res. , vol.41 , pp. W557-W561
    • Wolstencroft, K.1    Haines, R.2    Fellows, D.3
  • 22
    • 41649103682 scopus 로고    scopus 로고
    • A susceptibility locus for lung cancer maps to nicotinic acetylcholine receptor subunit genes on 15q25
    • Hung, R.J., McKay, J.D., Gaborieau, V. et al. (2008) A susceptibility locus for lung cancer maps to nicotinic acetylcholine receptor subunit genes on 15q25. Nature, 452, 633-637.
    • (2008) Nature , vol.452 , pp. 633-637
    • Hung, R.J.1    McKay, J.D.2    Gaborieau, V.3
  • 23
    • 84868337361 scopus 로고    scopus 로고
    • Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes
    • Morris, A.P., Voight, B.F., Teslovich, T.M. et al. (2012) Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes. Nat. Genet., 44, 981-990.
    • (2012) Nat. Genet. , vol.44 , pp. 981-990
    • Morris, A.P.1    Voight, B.F.2    Teslovich, T.M.3
  • 24
    • 84855255293 scopus 로고    scopus 로고
    • Common variants show predicted polygenic effects on height in the tails of the distribution, except in extremely short individuals
    • Chan, Y., Holmen, O.L., Dauber, A. et al. (2011) Common variants show predicted polygenic effects on height in the tails of the distribution, except in extremely short individuals. PLoS Genet., 7, e1002439.
    • (2011) PLoS Genet. , vol.7
    • Chan, Y.1    Holmen, O.L.2    Dauber, A.3
  • 25
    • 84879691837 scopus 로고    scopus 로고
    • Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci
    • International Genetics of Ankylosing Spondylitis Consortium, Cortes, A., Hadler, J. et al. (2013) Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci. Nat. Genet., 45, 730-738.
    • (2013) Nat. Genet. , vol.45 , pp. 730-738
    • Cortes, A.1    Hadler, J.2
  • 26
    • 78651257523 scopus 로고    scopus 로고
    • Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3
    • Purdue, M.P., Johansson, M., Zelenika, D. et al. (2011) Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3. Nat. Genet., 43, 60-65.
    • (2011) Nat. Genet. , vol.43 , pp. 60-65
    • Purdue, M.P.1    Johansson, M.2    Zelenika, D.3
  • 27
    • 84881022482 scopus 로고    scopus 로고
    • Genome-wide meta-analysis identifies new susceptibility loci for migraine
    • Anttila, V., Winsvold, B.S., Gormley, P. et al. (2013) Genome-wide meta-analysis identifies new susceptibility loci for migraine. Nat. Genet., 45, 912-917.
    • (2013) Nat. Genet. , vol.45 , pp. 912-917
    • Anttila, V.1    Winsvold, B.S.2    Gormley, P.3
  • 28
    • 84863399988 scopus 로고    scopus 로고
    • Genome-wide association scan identifies a risk locus for preeclampsia on 2q14, near the inhibin, beta B gene
    • Johnson, M.P., Brennecke, S.P., East, C.E. et al. (2012) Genome-wide association scan identifies a risk locus for preeclampsia on 2q14, near the inhibin, beta B gene. PLoS One, 7, e33666.
    • (2012) PLoS One , vol.7
    • Johnson, M.P.1    Brennecke, S.P.2    East, C.E.3
  • 29
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: A tool set for whole-genome association and population-based linkage analyses
    • Purcell, S., Neale, B., Todd-Brown, K. et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet., 81, 559-575.
    • (2007) Am. J. Hum. Genet. , vol.81 , pp. 559-575
    • Purcell, S.1    Neale, B.2    Todd-Brown, K.3
  • 30
    • 80052579099 scopus 로고    scopus 로고
    • Implementing a genomic data management system using iRODS in the wellcome trust sanger institute
    • Chiang, G.T., Clapham, P., Qi, G. et al. (2011) Implementing a genomic data management system using iRODS in the Wellcome Trust Sanger Institute. BMC Bioinformatics, 12, 361.
    • (2011) BMC Bioinformatics , vol.12 , pp. 361
    • Chiang, G.T.1    Clapham, P.2    Qi, G.3
  • 31
    • 81355149274 scopus 로고    scopus 로고
    • EXframe: Reusable framework for storage, analysis and visualization of genomics experiments
    • Sinha, A.U., Merrill, E., Armstrong, S.A. et al. (2011) eXframe: reusable framework for storage, analysis and visualization of genomics experiments. BMC Bioinformatics, 12, 452.
    • (2011) BMC Bioinformatics , vol.12 , pp. 452
    • Sinha, A.U.1    Merrill, E.2    Armstrong, S.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.