메뉴 건너뛰기




Volumn 5, Issue JUL, 2014, Pages

Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome

Author keywords

Asian seabass; Chromosomes; rDNA; Repeated DNA; Transcriptome

Indexed keywords

TRANSCRIPTOME;

EID: 84906256516     PISSN: None     EISSN: 16648021     Source Type: Journal    
DOI: 10.3389/fgene.2014.00223     Document Type: Article
Times cited : (22)

References (68)
  • 1
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • doi: 10. 1016/S0022-2836(05) 80360-2
    • Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403-410. doi: 10.1016/S0022-2836(05)80360-2
    • (1990) J. Mol. Biol. , vol.215 , pp. 403-410
    • Altschul, S.F.1    Gish, W.2    Miller, W.3    Myers, E.W.4    Lipman, D.J.5
  • 2
    • 84860771820 scopus 로고    scopus 로고
    • SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
    • doi: 10.1089/cmb.2012.0021
    • Bankevich, A., Nurk, S., Antipov, D., Gurevich, A. A., Dvorkin, M., Kulikov, A. S., et al. (2012). SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477. doi: 10.1089/cmb.2012.0021
    • (2012) J. Comput. Biol. , vol.19 , pp. 455-477
    • Bankevich, A.1    Nurk, S.2    Antipov, D.3    Gurevich, A.A.4    Dvorkin, M.5    Kulikov, A.S.6
  • 3
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: a program to analyze DNA sequences
    • doi: 10.1093/nar/27.2.573
    • Benson, G. (1999). Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27, 573-580. doi: 10.1093/nar/27.2.573
    • (1999) Nucleic Acids Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 4
    • 0004289379 scopus 로고
    • Berlin: Springer-Verlag
    • Beridze, T. (1986). Satellite DNA. Berlin: Springer-Verlag.
    • (1986) Satellite DNA
    • Beridze, T.1
  • 5
    • 0014407722 scopus 로고
    • Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms
    • doi: 10.1126/science.161.3841.529
    • Britten, R. J., and Kohne, D. E. (1968). Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms. Science 161, 529-540. doi: 10.1126/science.161.3841.529
    • (1968) Science , vol.161 , pp. 529-540
    • Britten, R.J.1    Kohne, D.E.2
  • 6
    • 0141541808 scopus 로고    scopus 로고
    • Evolution of low-copy number and major satellite DNA sequences coexisting in two Pimelia species-groups (Coleoptera)
    • doi: 10.1016/S0378-1119(03)00603-6
    • Bruvo, B., Pons, J., Ugarković, D., Juan, C., Petitpierre, E., and Plohl, M. (2003). Evolution of low-copy number and major satellite DNA sequences coexisting in two Pimelia species-groups (Coleoptera). Gene 312, 85-94. doi: 10.1016/S0378-1119(03)00603-6
    • (2003) Gene , vol.312 , pp. 85-94
    • Bruvo, B.1    Pons, J.2    Ugarkovic, D.3    Juan, C.4    Petitpierre, E.5    Plohl, M.6
  • 7
    • 0034106947 scopus 로고    scopus 로고
    • Non-radioactive dot-blot DNA reassociation for unequivocal yeast identification
    • doi: 10.1099/00207713-50-2-931
    • Cardinali, G., Liti, G., and Martini, A. (2000). Non-radioactive dot-blot DNA reassociation for unequivocal yeast identification. Int. J. Syst. Evol. Microbiol. 50, 931-936. doi: 10.1099/00207713-50-2-931
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 931-936
    • Cardinali, G.1    Liti, G.2    Martini, A.3
  • 8
    • 58349099600 scopus 로고    scopus 로고
    • A new class of retroviral and satellite encoded small RNAs emanates from mammalian centromeres
    • doi: 10.1007/s00412-008-0181-5
    • Carone, D. M., Longo, M. S., Ferreri, G. C., Hall, L., Harris, M., Shook, N., et al. (2009). A new class of retroviral and satellite encoded small RNAs emanates from mammalian centromeres. Chromosoma 118, 113-125. doi: 10.1007/s00412-008-0181-5
    • (2009) Chromosoma , vol.118 , pp. 113-125
    • Carone, D.M.1    Longo, M.S.2    Ferreri, G.C.3    Hall, L.4    Harris, M.5    Shook, N.6
  • 9
    • 0037452927 scopus 로고    scopus 로고
    • Transposon telomeres are widely distributed in the Drosophila genus: TART elements in the virilis group
    • doi: 10.1073/pnas.0230353100
    • Casacuberta, E., and Pardue, M. L. (2003). Transposon telomeres are widely distributed in the Drosophila genus: TART elements in the virilis group. Proc. Natl. Acad. Sci. U.S.A. 100, 3363-3368. doi: 10.1073/pnas.0230353100
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 3363-3368
    • Casacuberta, E.1    Pardue, M.L.2
  • 10
    • 0036491982 scopus 로고    scopus 로고
    • Molecular and cytogenetic analysis of the telomeric (TTAGGG)n repetitive sequences in the Nile tilapia Oreochromis niloticus (Teleostei: Cichlidae).
    • doi: 10.1007/s00412-002-0187-3
    • Chew, J. S. K., Oliveira, C., Wright, J. M., and Dobson, M. J. (2002). Molecular and cytogenetic analysis of the telomeric (TTAGGG)n repetitive sequences in the Nile tilapia, Oreochromis niloticus (Teleostei: Cichlidae). Chromosoma 111, 45-52. doi: 10.1007/s00412-002-0187-3
    • (2002) Chromosoma , vol.111 , pp. 45-52
    • Chew, J.S.K.1    Oliveira, C.2    Wright, J.M.3    Dobson, M.J.4
  • 11
    • 0004002022 scopus 로고    scopus 로고
    • New York, NY: Oxford University Press.
    • Choo, K. H. (1997). The Centromere. New York, NY: Oxford University Press.
    • (1997) The Centromere
    • Choo, K.H.1
  • 12
    • 84888053281 scopus 로고    scopus 로고
    • Independent sex chromosome evolution in lower vertebrates: cytogenetic overview in the erythrinidae fish family
    • doi: 10.1159/000354039
    • Cioffi, M. B., Liehr, T., Trifonov, V., Molina, W. F., and Bertollo, L. A. (2013). Independent sex chromosome evolution in lower vertebrates: cytogenetic overview in the erythrinidae fish family. Cytogenet. Genome Res. 6, 2-9. doi: 10.1159/000354039
    • (2013) Cytogenet. Genome Res. , vol.6 , pp. 2-9
    • Cioffi, M.B.1    Liehr, T.2    Trifonov, V.3    Molina, W.F.4    Bertollo, L.A.5
  • 13
    • 77956480975 scopus 로고    scopus 로고
    • Chromosome spreading of associated transposable elements and ribosomal DNA in the fish Erythrinus erythrinus Implications for genome change and karyoevolution in fish.
    • doi: 10.1186/1471-2148-10-271Biol
    • Cioffi, M. B., Martins, C., and Bertollo, L. A. (2010). Chromosome spreading of associated transposable elements and ribosomal DNA in the fish Erythrinus erythrinus. Implications for genome change and karyoevolution in fish. BMC Evol. Biol. 10:271. doi: 10.1186/1471-2148-10-271
    • (2010) BMC Evol. , vol.10 , pp. 271
    • Cioffi, M.B.1    Martins, C.2    Bertollo, L.A.3
  • 14
    • 80052037827 scopus 로고    scopus 로고
    • Chromosomal distribution of repetitive DNA sequences highlights the independent differentiation of multiple sex chromosomes in two closely related fish species
    • doi: 10.1159/000329481
    • Cioffi, M. B., Molina, W. F., Moreira-Filho, O., and Bertollo, L. A. (2011). Chromosomal distribution of repetitive DNA sequences highlights the independent differentiation of multiple sex chromosomes in two closely related fish species. Cytogenet. Genome Res. 134, 295-302. doi: 10.1159/000329481
    • (2011) Cytogenet. Genome Res. , vol.134 , pp. 295-302
    • Cioffi, M.B.1    Molina, W.F.2    Moreira-Filho, O.3    Bertollo, L.A.4
  • 15
    • 0030920611 scopus 로고    scopus 로고
    • A transposon-based strategy for sequencing repetitive DNA in eukaryotic genomes
    • Devine, S. E., Chissoe, S. L., Eby, Y., Wilson, R. K., and Boeke, J. D. (1997). A transposon-based strategy for sequencing repetitive DNA in eukaryotic genomes. Genome Res. 7, 551-563.
    • (1997) Genome Res , vol.7 , pp. 551-563
    • Devine, S.E.1    Chissoe, S.L.2    Eby, Y.3    Wilson, R.K.4    Boeke, J.D.5
  • 16
    • 67849104764 scopus 로고    scopus 로고
    • Satellite DNA spatial localization and transcriptional activity in mouse embryonic E-14 and IOUD2 stem cells
    • doi: 10.1159/000218132
    • Enukashvily, N. I., Malashicheva, A. B., and Waisertreiger, I. S. R. (2009). Satellite DNA spatial localization and transcriptional activity in mouse embryonic E-14 and IOUD2 stem cells. Cytogenet. Genome Res. 124, 277-287. doi: 10.1159/000218132
    • (2009) Cytogenet. Genome Res. , vol.124 , pp. 277-287
    • Enukashvily, N.I.1    Malashicheva, A.B.2    Waisertreiger, I.S.R.3
  • 17
    • 84876220064 scopus 로고    scopus 로고
    • Mammalian satellite DNA: a speaking dumb
    • doi: 10.1016/B978-0-12-410523-2.00002-X
    • Enukashvily, N. I., and Ponomartsev, N. V. (2013). Mammalian satellite DNA: a speaking dumb. Adv. Protein Chem. Struct. Biol. 90, 31-65. doi: 10.1016/B978-0-12-410523-2.00002-X
    • (2013) Adv. Protein Chem. Struct. Biol. , vol.90 , pp. 31-65
    • Enukashvily, N.I.1    Ponomartsev, N.V.2
  • 18
    • 78149361675 scopus 로고    scopus 로고
    • Chromosome mapping of retrotransposable elements Rex1 and Rex3 in three fish species in the subfamily Hypoptopomatinae (Teleostei, Siluriformes
    • doi: 10.1159/000319620
    • Ferreira, D. C., Oliveira, C., and Foresti, F. (2011). Chromosome mapping of retrotransposable elements Rex1 and Rex3 in three fish species in the subfamily Hypoptopomatinae (Teleostei, Siluriformes, Loricariidae). Cytogenet. Genome Res. 132, 64-70. doi: 10.1159/000319620
    • (2011) Loricariidae). Cytogenet. Genome Res. , vol.132 , pp. 64-70
    • Ferreira, D.C.1    Oliveira, C.2    Foresti, F.3
  • 19
    • 44049107208 scopus 로고    scopus 로고
    • Physical chromosome mapping of repetitive DNA sequences in Nile tilapia Oreochromis niloticus: evidences for a differential distribution of repetitive elements in the sex chromosomes
    • doi: 10.1016/j.micron.2007.02.010
    • Ferreira, I. A., and Martins, C. (2008). Physical chromosome mapping of repetitive DNA sequences in Nile tilapia Oreochromis niloticus: evidences for a differential distribution of repetitive elements in the sex chromosomes. Micron 39, 411-418. doi: 10.1016/j.micron.2007.02.010
    • (2008) Micron , vol.39 , pp. 411-418
    • Ferreira, I.A.1    Martins, C.2
  • 21
    • 79957465448 scopus 로고    scopus 로고
    • The first family-based breeding program in aquaculture
    • doi: 10.1111/j.1753-5131.2010.01011.x
    • Gjedrem, T. (2010). The first family-based breeding program in aquaculture. Rev Aqua 2, 2-15. doi: 10.1111/j.1753-5131.2010.01011.x
    • (2010) Rev Aqua , vol.2 , pp. 2-15
    • Gjedrem, T.1
  • 23
    • 0028162347 scopus 로고
    • Reproductive cycle and sex inversion of the seabass Lates calcarifer, reared in sea cages in French Polynesia: histological and morphometric description
    • doi: 10.1007/BF00005126
    • Guiguen, Y., Cauty, C., Fostier, A., Fuchs, J., and Jalabert, B. (1993). Reproductive cycle and sex inversion of the seabass, Lates calcarifer, reared in sea cages in French Polynesia: histological and morphometric description. Environ. Biol. Fish 39, 231-247. doi: 10.1007/BF00005126
    • (1993) Environ. Biol. Fish , vol.39 , pp. 231-247
    • Guiguen, Y.1    Cauty, C.2    Fostier, A.3    Fuchs, J.4    Jalabert, B.5
  • 24
    • 54249151893 scopus 로고    scopus 로고
    • Distribution of the tandem repeat sequences and karyotyping in cucumber (Cucumis sativus L ) by fluorescence in situ hybridization
    • doi: 10.1159/000151320
    • Han, Y. H., Zhang, Z. H., Liu, J. H., Lu, J. Y., Huang, S. W., and Jin, W. W. (2008). Distribution of the tandem repeat sequences and karyotyping in cucumber (Cucumis sativus L.) by fluorescence in situ hybridization. Cytogenet. Genome Res. 122, 80-88. doi: 10.1159/000151320
    • (2008) Cytogenet. Genome Res. , vol.122 , pp. 80-88
    • Han, Y.H.1    Zhang, Z.H.2    Liu, J.H.3    Lu, J.Y.4    Huang, S.W.5    Jin, W.W.6
  • 25
    • 84863669014 scopus 로고    scopus 로고
    • Large-scale transcriptome analysis of retroelements in the migratory locust Locusta migratoria
    • doi: 10.1371/journal.pone.0040532
    • Jiang, F., Yang, M., Guo, W., Wang, X., and Kang, L. (2012). Large-scale transcriptome analysis of retroelements in the migratory locust, Locusta migratoria. PLoS ONE 7:e40532. doi: 10.1371/journal.pone.0040532
    • (2012) PLoS ONE , vol.7
    • Jiang, F.1    Yang, M.2    Guo, W.3    Wang, X.4    Kang, L.5
  • 26
    • 70349237408 scopus 로고    scopus 로고
    • Chromosomal location and distribution of As51 satellite DNA in five species of the genus Astyanax (Teleostei, Characidae Incertae sedis)
    • doi: 10.1111/j.1095-8649.2009.02333.x
    • Kantek, D. L. Z., Vicari, M. R., Peres, W. A. M., Cestari, M. M., Artoni, R. F., Bertollo, L. A., et al. (2009). Chromosomal location and distribution of As51 satellite DNA in five species of the genus Astyanax (Teleostei, Characidae, Incertae sedis). J. Fish Biol. 75, 408-421. doi: 10.1111/j.1095-8649.2009.02333.x
    • (2009) J. Fish Biol. , vol.75 , pp. 408-421
    • Kantek, D.L.Z.1    Vicari, M.R.2    Peres, W.A.M.3    Cestari, M.M.4    Artoni, R.F.5    Bertollo, L.A.6
  • 27
    • 34547622854 scopus 로고    scopus 로고
    • Different origins of bird and reptile sex chromosomes inferred from comparative mapping of chicken Z-linked genes
    • doi: 10.1159/000103169
    • Kawai, A., Nishida-Umehara, C., Ishijima, J., Tsuda, Y., Ota, H., and Matsuda, Y. (2007). Different origins of bird and reptile sex chromosomes inferred from comparative mapping of chicken Z-linked genes. Cytogenet. Genome Res. 117, 92-102. doi: 10.1159/000103169
    • (2007) Cytogenet. Genome Res. , vol.117 , pp. 92-102
    • Kawai, A.1    Nishida-Umehara, C.2    Ishijima, J.3    Tsuda, Y.4    Ota, H.5    Matsuda, Y.6
  • 28
    • 33750831582 scopus 로고    scopus 로고
    • Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
    • doi: 10.1186/1471-2105-7-474
    • Kohany, O., Gentles, A. J., Hankus, L., and Jurka, J. (2006). Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics 7:474. doi: 10.1186/1471-2105-7-474
    • (2006) BMC Bioinformatics , vol.7 , pp. 474
    • Kohany, O.1    Gentles, A.J.2    Hankus, L.3    Jurka, J.4
  • 30
    • 28844473478 scopus 로고    scopus 로고
    • Short retroposons in eukaryotic genomes
    • doi: 10.1016/S0074-7696(05)47004-7
    • Kramerov, D. A., and Vassetzky, N. S. (2005). Short retroposons in eukaryotic genomes. Int. Rev. Cytol. 247, 165-221. doi: 10.1016/S0074-7696(05)47004-7
    • (2005) Int. Rev. Cytol. , vol.247 , pp. 165-221
    • Kramerov, D.A.1    Vassetzky, N.S.2
  • 31
    • 84894891286 scopus 로고    scopus 로고
    • Localisation and transcription of human chromosome 1 pericentromeric heterochromatin in embryonic and extraembryonic tissues
    • Kuznetzova, T., Enukashvily, N., Trofimova, I., Gorbunova, A., Vashukova, E., and Baranov, V. (2012). Localisation and transcription of human chromosome 1 pericentromeric heterochromatin in embryonic and extraembryonic tissues. Med. Genetics 11, 19-24.
    • (2012) Med. Genetics , vol.11 , pp. 19-24
    • Kuznetzova, T.1    Enukashvily, N.2    Trofimova, I.3    Gorbunova, A.4    Vashukova, E.5    Baranov, V.6
  • 32
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • doi: 10.1186/gb-2009-10-3-r25
    • Langmead, B., Trapnell, C., Pop, M., and Salzberg, S. L. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25. doi: 10.1186/gb-2009-10-3-r25
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 33
    • 20444429793 scopus 로고    scopus 로고
    • A second-generation genetic linkage map of tilapia (Oreochromis spp )
    • doi: 10.1534/genetics.104.035022
    • Lee, B.-Y., Lee, W.-J., Streelman, J. T., Carleton, K. L., Howe, A. E., Hulata, G., et al. (2005). A second-generation genetic linkage map of tilapia (Oreochromis spp.). Genetics 170, 237-244. doi: 10.1534/genetics.104.035022
    • (2005) Genetics , vol.170 , pp. 237-244
    • Lee, B.-Y.1    Lee, W.-J.2    Streelman, J.T.3    Carleton, K.L.4    Howe, A.E.5    Hulata, G.6
  • 34
    • 79960004119 scopus 로고    scopus 로고
    • Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
    • doi: 10.1093/nar/gkr201
    • Letunic, I., and Bork, P. (2011). Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 39, W475-W478. doi: 10.1093/nar/gkr201
    • (2011) Nucleic Acids Res , vol.39
    • Letunic, I.1    Bork, P.2
  • 35
    • 84979193387 scopus 로고
    • Nomemclature for centromic position on chromosomes
    • doi: 10.1111/j.1601-5223.1964.tb01953.x
    • Levan, A., Fredga, K., and Sandberg, A. A. (1964). Nomemclature for centromic position on chromosomes. Hereditas 52, 201-220. doi: 10.1111/j.1601-5223.1964.tb01953.x
    • (1964) Hereditas , vol.52 , pp. 201-220
    • Levan, A.1    Fredga, K.2    Sandberg, A.A.3
  • 36
    • 4344702182 scopus 로고    scopus 로고
    • DNA marker technologies and their applications in aquaculture genetics
    • doi: 10.1016/j.aquaculture.2004.05.027
    • Liu, Z., and Cordes, J. (2004). DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238, 1-37. doi: 10.1016/j.aquaculture.2004.05.027
    • (2004) Aquaculture , vol.238 , pp. 1-37
    • Liu, Z.1    Cordes, J.2
  • 37
    • 84906225589 scopus 로고    scopus 로고
    • Lates calcarifer, Barramundi: Fisheries, Aquaculture, Gamefish, Aquarium [Online]. Fish Base (On-line) [Accessed April 2, 2008]
    • Luna, S. (2008). Lates calcarifer, Barramundi: Fisheries, Aquaculture, Gamefish, Aquarium [Online]. Fish Base (On-line) Available online at: http://fishbase.sinica.edu.tw/summary/speciessummary.php?genusname=Lates&speciesname=calcarifer [Accessed April 2, 2008].
    • (2008)
    • Luna, S.1
  • 38
    • 18244394329 scopus 로고    scopus 로고
    • Conserved 5S and variable 45S rDNA chromosomal localisation revealed by FISH in Astyanax scabripinnis (Pisces Characidae)
    • doi: 10.1007/s10709-004-2281-3
    • Mantovani, M., Abel, L. D. D. S., and Moreira-Filho, O. (2005). Conserved 5S and variable 45S rDNA chromosomal localisation revealed by FISH in Astyanax scabripinnis (Pisces, Characidae). Genetica 123, 211-216. doi: 10.1007/s10709-004-2281-3
    • (2005) Genetica , vol.123 , pp. 211-216
    • Mantovani, M.1    Abel, L.D.D.S.2    Moreira-Filho, O.3
  • 39
    • 79952592810 scopus 로고    scopus 로고
    • A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
    • doi: 10.1093/bioinformatics/btr011
    • Marcais, G., and Kingsford, C. (2011). A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics 27, 764-770. doi: 10.1093/bioinformatics/btr011
    • (2011) Bioinformatics , vol.27 , pp. 764-770
    • Marcais, G.1    Kingsford, C.2
  • 40
    • 33646022699 scopus 로고    scopus 로고
    • "Organization and evolution of 5S ribosomal DNA in the fish genome,"
    • in ed C. R. Williams (New York NY: Nova Science Publishers)
    • Martins, C., Wasko, A. P., Chapter, X., Clyde, R., and Nova, W. (2004). "Organization and evolution of 5S ribosomal DNA in the fish genome," in Focus on Genome Research, ed C. R. Williams (New York, NY: Nova Science Publishers), 335-363.
    • (2004) Focus on Genome Research , pp. 335-363
    • Martins, C.1    Wasko, A.P.2    Chapter, X.3    Clyde, R.4    Nova, W.5
  • 41
    • 84906251939 scopus 로고    scopus 로고
    • Molecular Genetic Analysis of TART (Telomere-Associated Retrotransposon) in Drosophila Melanogaster
    • Ph.D. thesis, Syracuse University Biology
    • Maxwell, P. (2004). Molecular Genetic Analysis of TART (Telomere-Associated Retrotransposon) in Drosophila Melanogaster. Ph.D. thesis, Syracuse University Biology.
    • (2004)
    • Maxwell, P.1
  • 42
    • 79951477415 scopus 로고    scopus 로고
    • Analysis of three multigene families as useful tools in species characterization of two closely-related species, Dicentrarchus labrax Dicentrarchus punctatus and their hybrids
    • doi: 10.1266/ggs.85.341
    • Merlo, M. A., Cross, I., Chairi, H., Manchado, M., and Rebordinos, L. (2010). Analysis of three multigene families as useful tools in species characterization of two closely-related species, Dicentrarchus labrax, Dicentrarchus punctatus and their hybrids. Genes Genet. Syst. 85, 341-349. doi: 10.1266/ggs.85.341
    • (2010) Genes Genet. Syst. , vol.85 , pp. 341-349
    • Merlo, M.A.1    Cross, I.2    Chairi, H.3    Manchado, M.4    Rebordinos, L.5
  • 43
    • 0031903901 scopus 로고    scopus 로고
    • Evolution of satellite DNAs from the genus Palorus-experimental evidence for the "library" hypothesis
    • doi: 10.1093/oxfordjournals.molbev.a026005
    • Mestrović, N., Plohl, M., Mravinac, B., and Ugarković, D. (1998). Evolution of satellite DNAs from the genus Palorus-experimental evidence for the "library" hypothesis. Mol. Biol. Evol. 15, 1062-1068. doi: 10.1093/oxfordjournals.molbev.a026005
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1062-1068
    • Mestrovic, N.1    Plohl, M.2    Mravinac, B.3    Ugarkovic, D.4
  • 44
    • 84970610692 scopus 로고
    • Natural sex inversion in the giant perch (Lates calcarifer)
    • doi: 10.1071/MF9790803
    • Moore, R. (1979). Natural sex inversion in the giant perch (Lates calcarifer). Aust. J. Mar. Freshwat. Res. 30, 803-813. doi: 10.1071/MF9790803
    • (1979) Aust. J. Mar. Freshwat. Res. , vol.30 , pp. 803-813
    • Moore, R.1
  • 45
    • 77955006467 scopus 로고    scopus 로고
    • Parallelism in evolution of highly repetitive DNAs in sibling species
    • doi: 10.1093/molbev/msq068
    • Mravinac, B., and Plohl, M. (2010). Parallelism in evolution of highly repetitive DNAs in sibling species. Mol. Biol. Evol. 27, 1857-1867. doi: 10.1093/molbev/msq068
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 1857-1867
    • Mravinac, B.1    Plohl, M.2
  • 46
  • 47
    • 0036581160 scopus 로고    scopus 로고
    • Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR
    • doi: 10.1093/nar/30.9.e36
    • Pfaffl, M. W., Horgan, G. W., and Dempfle, L. (2002). Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Res. 30:e36. doi: 10.1093/nar/30.9.e36
    • (2002) Nucleic Acids Res , vol.30
    • Pfaffl, M.W.1    Horgan, G.W.2    Dempfle, L.3
  • 48
    • 46649117329 scopus 로고    scopus 로고
    • Discrimination of Shark species by simple PCR of 5S rDNA repeats
    • doi: 10.1590/S1415-47572008000200033
    • Pinhal, D., Gadigll, O., Wasko, A. P, Oliveirai, C., Ron, E., Foresti, F., et al. (2008). Discrimination of Shark species by simple PCR of 5S rDNA repeats. Genet. Mol. Biol. 361-365. doi: 10.1590/S1415-47572008000200033
    • (2008) Genet. Mol. Biol. , pp. 361-365
    • Pinhal, D.1    Gadigll, O.2    Wasko, A.P.3    Oliveirai, C.4    Ron, E.5    Foresti, F.6
  • 49
    • 2542455157 scopus 로고    scopus 로고
    • Complex structural features of satellite DNA sequences in the genus Pimelia (Coleoptera: Tenebrionidae): random differential amplification from a common 'satellite DNA library'
    • doi: 10.1038/sj.hdy.6800436
    • Pons, J., Bruvo, B., Petitpierre, E., Plohl, M., Ugarkovic, D., and Juan, C. (2004). Complex structural features of satellite DNA sequences in the genus Pimelia (Coleoptera: Tenebrionidae): random differential amplification from a common 'satellite DNA library'. Heredity 92, 418-427. doi: 10.1038/sj.hdy.6800436
    • (2004) Heredity , vol.92 , pp. 418-427
    • Pons, J.1    Bruvo, B.2    Petitpierre, E.3    Plohl, M.4    Ugarkovic, D.5    Juan, C.6
  • 50
    • 0033580249 scopus 로고    scopus 로고
    • A LINE element from the pufferfish (fugu) Fugu rubripes which shows similarity to the CR1 family of non-LTR retrotransposons
    • doi: 10.1016/S0378-1119(98)00600-3
    • Poulter, R., Butler, M., and Ormandy, J. (1999). A LINE element from the pufferfish (fugu) Fugu rubripes which shows similarity to the CR1 family of non-LTR retrotransposons. Gene 227, 169-179. doi: 10.1016/S0378-1119(98)00600-3
    • (1999) Gene , vol.227 , pp. 169-179
    • Poulter, R.1    Butler, M.2    Ormandy, J.3
  • 51
    • 85012503983 scopus 로고    scopus 로고
    • A Simple technique for chromosome preparation from embryonic tissues of teleosts for ploidy verification caryologia
    • doi: 10.1080/00087114.2002.10589788
    • Pradeep, P. J., Srijaya, T. C., Zain, R. B., Papini, A., and Chatterji, A. K. (2011). A Simple technique for chromosome preparation from embryonic tissues of teleosts for ploidy verification caryologia. Caryologia 64, 235-241. doi: 10.1080/00087114.2002.10589788
    • (2011) Caryologia , vol.64 , pp. 235-241
    • Pradeep, P.J.1    Srijaya, T.C.2    Zain, R.B.3    Papini, A.4    Chatterji, A.K.5
  • 52
    • 34249790257 scopus 로고    scopus 로고
    • rRNA gene silencing and nucleolar dominance: insights into a chromosome-scale epigenetic on/off switch
    • doi: 10.1016/j.bbaexp.2007.02.005
    • Preuss, S., and Pikaard, C. S. (2007). rRNA gene silencing and nucleolar dominance: insights into a chromosome-scale epigenetic on/off switch. Biochim. Biophys. Acta Gene Struct. Expr. 1769, 383-392. doi: 10.1016/j.bbaexp.2007.02.005
    • (2007) Biochim. Biophys. Acta Gene Struct. Expr. , vol.1769 , pp. 383-392
    • Preuss, S.1    Pikaard, C.S.2
  • 53
    • 0742270643 scopus 로고    scopus 로고
    • Transcriptional activation of a constitutive heterochromatic domain of the human genome in response to heat shock
    • doi: 10.1091/mbc.E03-07-0487
    • Rizzi, N., Denegri, M., Chiodi, I., Corioni, M., Valgardsdottir, R., Cobianchi, F., et al. (2004). Transcriptional activation of a constitutive heterochromatic domain of the human genome in response to heat shock. Mol. Biol. Cell 15, 543-551. doi: 10.1091/mbc.E03-07-0487
    • (2004) Mol. Biol. Cell , vol.15 , pp. 543-551
    • Rizzi, N.1    Denegri, M.2    Chiodi, I.3    Corioni, M.4    Valgardsdottir, R.5    Cobianchi, F.6
  • 54
    • 0003903343 scopus 로고    scopus 로고
    • 3rd Edn. Cold Spring, NY: Cold Spring Harbor Laboratory Press.
    • Sambrook, J., and Russell, D. W. (2001). Molecular Cloning: Manual, 3rd Edn. Cold Spring, NY: Cold Spring Harbor Laboratory Press.
    • (2001) Molecular Cloning: Manual
    • Sambrook, J.1    Russell, D.W.2
  • 55
    • 0018834679 scopus 로고
    • Chromosome banding in amphibia IV. Differentiation of GC- and AT-rich chromosome regions in Anura
    • doi: 10.1007/BF00292043
    • Schmid, M. (1980). Chromosome banding in amphibia. IV. Differentiation of GC- and AT-rich chromosome regions in Anura. Chromosoma 77, 83-103. doi: 10.1007/BF00292043
    • (1980) Chromosoma , vol.77 , pp. 83-103
    • Schmid, M.1
  • 56
    • 0023722457 scopus 로고
    • Evolutionary diversity of reverse (R) fluorescent chromosome bands in vertebrates
    • doi: 10.1007/BF00327367
    • Schmid, M., and Guttenbach, M. (1988). Evolutionary diversity of reverse (R) fluorescent chromosome bands in vertebrates. Chromosoma 97, 101-114. doi: 10.1007/BF00327367
    • (1988) Chromosoma , vol.97 , pp. 101-114
    • Schmid, M.1    Guttenbach, M.2
  • 57
    • 0018863274 scopus 로고
    • Simultaneous fluorescent staining of R bands and specific heterochromatic regions (DA-DAPI bands) in human chromosomes
    • doi: 10.1159/000131482
    • Schweizer, D. (1980). Simultaneous fluorescent staining of R bands and specific heterochromatic regions (DA-DAPI bands) in human chromosomes. Cytogenet. Cell Genet. 27, 190-193. doi: 10.1159/000131482
    • (1980) Cytogenet. Cell Genet. , vol.27 , pp. 190-193
    • Schweizer, D.1
  • 58
    • 77952093964 scopus 로고    scopus 로고
    • Identification of repetitive elements in the genome of Oreochromis niloticus: tilapia repeat masker
    • doi: 10.1007/s10126-009-9236-8
    • Shirak, A., Grabherr, M., Di Palma, F., Lindblad-Toh, K., Hulata, G., Ron, M., et al. (2009). Identification of repetitive elements in the genome of Oreochromis niloticus: tilapia repeat masker. Mar. Biotechnol. 12, 121-125. doi: 10.1007/s10126-009-9236-8
    • (2009) Mar. Biotechnol. , vol.12 , pp. 121-125
    • Shirak, A.1    Grabherr, M.2    Di Palma, F.3    Lindblad-Toh, K.4    Hulata, G.5    Ron, M.6
  • 59
    • 0001899550 scopus 로고
    • Tigr assembler: a new tool for assembling large shotgun sequencing projects
    • doi: 10.1089/gst.1995.1.9
    • Sutton, G. G., White, O., Adams, M. D., and Kerlavage, A. R. (1995). Tigr assembler: a new tool for assembling large shotgun sequencing projects. Genome Sci Tech 1, 9-19. doi: 10.1089/gst.1995.1.9
    • (1995) Genome Sci Tech , vol.1 , pp. 9-19
    • Sutton, G.G.1    White, O.2    Adams, M.D.3    Kerlavage, A.R.4
  • 60
    • 79551642322 scopus 로고    scopus 로고
    • Aberrant overexpression of satellite repeats in pancreatic and other epithelial cancers
    • doi: 10.1126/science.1200801
    • Ting, D. T., Lipson, D., Paul, S., Brannigan, B. W., Akhavanfard, S., Coffman, E. J., et al. (2011). Aberrant overexpression of satellite repeats in pancreatic and other epithelial cancers. Science 331, 593-596. doi: 10.1126/science.1200801
    • (2011) Science , vol.331 , pp. 593-596
    • Ting, D.T.1    Lipson, D.2    Paul, S.3    Brannigan, B.W.4    Akhavanfard, S.5    Coffman, E.J.6
  • 61
    • 79953161520 scopus 로고    scopus 로고
    • Cytogenetic mapping of the retroelements Rex1 Rex3 and Rex6 among cichlid fish: new insights on the chromosomal distribution of transposable elements
    • doi: 10.1159/000322888
    • Valente, G. T., Mazzuchelli, J., Ferreira, I. A., Poletto, A. B., Fantinatti, B. E., and Martins, C. (2011). Cytogenetic mapping of the retroelements Rex1, Rex3 and Rex6 among cichlid fish: new insights on the chromosomal distribution of transposable elements. Cytogenet. Genome Res. 133, 34-42. doi: 10.1159/000322888
    • (2011) Cytogenet. Genome Res. , vol.133 , pp. 34-42
    • Valente, G.T.1    Mazzuchelli, J.2    Ferreira, I.A.3    Poletto, A.B.4    Fantinatti, B.E.5    Martins, C.6
  • 62
    • 19644391725 scopus 로고    scopus 로고
    • Structural and functional characterization of noncoding repetitive RNAs transcribed in stressed human cells
    • doi: 10.1091/mbc.E04-12-1078
    • Valgardsdottir, R., Chiodi, I., Giordano, M., Cobianchi, F., Riva, S., and Biamonti, G. (2005). Structural and functional characterization of noncoding repetitive RNAs transcribed in stressed human cells. Mol. Biol. Cell 16, 2597-2604. doi: 10.1091/mbc.E04-12-1078
    • (2005) Mol. Biol. Cell , vol.16 , pp. 2597-2604
    • Valgardsdottir, R.1    Chiodi, I.2    Giordano, M.3    Cobianchi, F.4    Riva, S.5    Biamonti, G.6
  • 63
    • 77954001838 scopus 로고    scopus 로고
    • Satellite DNA and chromosomes in Neotropical fishes: methods, applications and perspectives
    • doi: 10.1111/j.1095-8649.2010.02564
    • Vicari, M. R., Nogaroto, V., Noleto, R. B., Cestari, M. M., Cioffi, M. B., Almeida, M. C., et al. (2010). Satellite DNA and chromosomes in Neotropical fishes: methods, applications and perspectives. J. Fish Biol. 76, 1094-1116. doi: 10.1111/j.1095-8649.2010.02564
    • (2010) J. Fish Biol. , vol.76 , pp. 1094-1116
    • Vicari, M.R.1    Nogaroto, V.2    Noleto, R.B.3    Cestari, M.M.4    Cioffi, M.B.5    Almeida, M.C.6
  • 64
    • 0345724809 scopus 로고    scopus 로고
    • Diversity of retrotransposable elements in compact pufferfish genomes
    • doi: 10.1016/j.tig.2003.10.006
    • Volff, J.-N., Bouneau, L., Ozouf-Costaz, C., and Fischer, C. (2003). Diversity of retrotransposable elements in compact pufferfish genomes. Trends Genet. 19, 674-678. doi: 10.1016/j.tig.2003.10.006
    • (2003) Trends Genet , vol.19 , pp. 674-678
    • Volff, J.-N.1    Bouneau, L.2    Ozouf-Costaz, C.3    Fischer, C.4
  • 65
    • 0033745895 scopus 로고    scopus 로고
    • Multiple lineages of the non-LTR retrotransposon Rex1 with varying success in invading fish genomes
    • doi: 10.1093/oxfordjournals.molbev.a026266
    • Volff, J. N., Körting, C., and Schartl, M. (2000). Multiple lineages of the non-LTR retrotransposon Rex1 with varying success in invading fish genomes. Mol. Biol. Evol. 17, 1673-1684. doi: 10.1093/oxfordjournals.molbev.a026266
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1673-1684
    • Volff, J.N.1    Körting, C.2    Schartl, M.3
  • 66
    • 0026265741 scopus 로고
    • Evolution of alpha satellite
    • doi: 10.1016/S0959-437X(05)80200-X
    • Willard, H. F. (1991). Evolution of alpha satellite. Curr. Opin. Genetics Dev. 1, 509-514. doi: 10.1016/S0959-437X(05)80200-X
    • (1991) Curr. Opin. Genetics Dev. , vol.1 , pp. 509-514
    • Willard, H.F.1
  • 67
    • 77957789636 scopus 로고    scopus 로고
    • A First Generation BAC-Based Physical Map of the Asian Seabass (Lates calcarifer)
    • doi: 10.1371/journal.pone.0011974
    • Xia, J. H., Feng, F., Lin, G., Wang, C. M., and Yue, G. H. (2010). A First Generation BAC-Based Physical Map of the Asian Seabass (Lates calcarifer). PLoS ONE 5:e11974. doi: 10.1371/journal.pone.0011974
    • (2010) PLoS ONE , vol.5
    • Xia, J.H.1    Feng, F.2    Lin, G.3    Wang, C.M.4    Yue, G.H.5
  • 68
    • 0025907449 scopus 로고
    • Sequence and organization of 5S RNA genes from the eukaryotic protist Acanthamoeba castellanii
    • doi: 10.1016/0378-1119(91)90239-8
    • Zwick, M. G., Wiggs, M., and Paule, M. R. (1991). Sequence and organization of 5S RNA genes from the eukaryotic protist Acanthamoeba castellanii. Gene 101, 153-157. doi: 10.1016/0378-1119(91)90239-8
    • (1991) Gene , vol.101 , pp. 153-157
    • Zwick, M.G.1    Wiggs, M.2    Paule, M.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.