-
2
-
-
84885417693
-
Multifaceted impact of host C-C chemokine CCL2 in the immuno-pathogenesis of hiV-1/M. tuberculosis Co-infection
-
doi: 10.3389/fimmu.2013.00312
-
Ansari, A. W., Kamarulzaman, A., and Schmidt, R. E. (2013). Multifaceted impact of host C-C chemokine CCL2 in the immuno-pathogenesis of hiV-1/M. tuberculosis Co-infection. Front. Immunol. 4:312. doi: 10.3389/fimmu.2013.00312
-
(2013)
Front. Immunol.
, vol.4
, pp. 312
-
-
Ansari, A.W.1
Kamarulzaman, A.2
Schmidt, R.E.3
-
3
-
-
70449705831
-
The spectrum of latent tuberculosis: rethinking the biology and intervention strategies
-
doi: 10.1038/nrmicro2236
-
Barry, C. E., Boshoff, H. I., Dartois, V., Dick, T., Ehrt, S., Flynn, J., et al. (2009). The spectrum of latent tuberculosis: rethinking the biology and intervention strategies. Nat. Rev. Microbiol. 7, 845-855. doi: 10.1038/nrmicro2236
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 845-855
-
-
Barry, C.E.1
Boshoff, H.I.2
Dartois, V.3
Dick, T.4
Ehrt, S.5
Flynn, J.6
-
4
-
-
52449110241
-
A bayesian approach to functional-based multilevel modeling of longitudinal data: applications to environmental epidemiology
-
doi: 10.1093/biostatistics/kxm059
-
Berhane, K., and Molitor, N.-T. (2008). A bayesian approach to functional-based multilevel modeling of longitudinal data: applications to environmental epidemiology. Biostatistics 9, 686-699. doi: 10.1093/biostatistics/kxm059
-
(2008)
Biostatistics
, vol.9
, pp. 686-699
-
-
Berhane, K.1
Molitor, N.-T.2
-
5
-
-
77955894773
-
An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis
-
doi: 10.1038/nature09247
-
Berry, M. P., Graham, C. M., McNab, F. W., Xu, Z., Bloch, S. A., Oni, T., et al. (2010). An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis. Nature 466, 973-977. doi: 10.1038/nature09247
-
(2010)
Nature
, vol.466
, pp. 973-977
-
-
Berry, M.P.1
Graham, C.M.2
McNab, F.W.3
Xu, Z.4
Bloch, S.A.5
Oni, T.6
-
6
-
-
0141669013
-
Experimental mycobacterium tuberculosis infection of cynomolgus macaques closely resembles the various manifestations of human m. tuberculosis infection
-
doi: 10.1128/IAI.71.10.5831-5844.2003
-
Capuano, S. V., Croix, D. A., Pawar, S., Zinovik, A., Myers, A., Lin, P. L., et al. (2003). Experimental mycobacterium tuberculosis infection of cynomolgus macaques closely resembles the various manifestations of human m. tuberculosis infection. Infect. Immun. 71, 5831-5844. doi: 10.1128/IAI.71.10.5831-5844.2003
-
(2003)
Infect. Immun.
, vol.71
, pp. 5831-5844
-
-
Capuano, S.V.1
Croix, D.A.2
Pawar, S.3
Zinovik, A.4
Myers, A.5
Lin, P.L.6
-
8
-
-
84902593923
-
The biology of mycobacterium tuberculosis infection
-
doi: 10.4084/mjhid.2013.070
-
Delogu, G., Sali, M., and Fadda, G. (2013). The biology of mycobacterium tuberculosis infection. Mediterr. J. Hematol. Infect. Dis. 5, e2013070. doi: 10.4084/mjhid.2013.070
-
(2013)
Mediterr. J. Hematol. Infect. Dis.
, vol.5
-
-
Delogu, G.1
Sali, M.2
Fadda, G.3
-
9
-
-
77951883143
-
Genetic requirements for the survival of tubercle bacilli in primates
-
doi: 10.1086/652497
-
Dutta, N. K., Mehra, S., Didier, P. J., Roy, C. J., Doyle, L. A., Alvarez, X., et al. (2010). Genetic requirements for the survival of tubercle bacilli in primates. J. Infect. Dis. 201, 1743-1752. doi: 10.1086/652497
-
(2010)
J. Infect. Dis.
, vol.201
, pp. 1743-1752
-
-
Dutta, N.K.1
Mehra, S.2
Didier, P.J.3
Roy, C.J.4
Doyle, L.A.5
Alvarez, X.6
-
11
-
-
33747891871
-
Predicting the prognosis of breast cancer by integrating clinical and microarray data with bayesian networks
-
doi: 10.1093/bioinformatics/btl230
-
Gevaert, O., De Smet, F., Timmerman, D., Moreau, Y., and De Moor, B. (2006). Predicting the prognosis of breast cancer by integrating clinical and microarray data with bayesian networks. Bioinformatics 22, e184-e190. doi: 10.1093/bioinformatics/btl230
-
(2006)
Bioinformatics
, vol.22
-
-
Gevaert, O.1
De Smet, F.2
Timmerman, D.3
Moreau, Y.4
De Moor, B.5
-
12
-
-
84879231117
-
interleukin-17-dependent CXCL13 mediates mucosal vaccine-induced immunity against tuberculosis
-
doi: 10.1038/mi.2012.135
-
Gopal, R., Rangel-Moreno, J., Slight, S., Lin, Y., Nawar, H. F., Fallert Junecko, B. A., et al. (2013). interleukin-17-dependent CXCL13 mediates mucosal vaccine-induced immunity against tuberculosis. Mucosal. Immunol. 6, 972-984. doi: 10.1038/mi.2012.135
-
(2013)
Mucosal. Immunol.
, vol.6
, pp. 972-984
-
-
Gopal, R.1
Rangel-Moreno, J.2
Slight, S.3
Lin, Y.4
Nawar, H.F.5
Fallert Junecko, B.A.6
-
13
-
-
77949525182
-
CCL2 responses to Mycobacterium tuberculosis are associated with disease severity in tuberculosis
-
doi: 10.1371/journal.pone.0008459
-
Hasan, Z., Cliff, J. M., Dockrell, H. M., Jamil, B., Irfan, M., Ashraf, M., et al. (2009). CCL2 responses to Mycobacterium tuberculosis are associated with disease severity in tuberculosis. PLoS ONE 4:e8459. doi: 10.1371/journal.pone.0008459
-
(2009)
PLoS ONE
, vol.4
-
-
Hasan, Z.1
Cliff, J.M.2
Dockrell, H.M.3
Jamil, B.4
Irfan, M.5
Ashraf, M.6
-
14
-
-
58549112996
-
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
-
doi: 10.1093/nar/gkn923
-
Huang, D. A. W., Sherman, B. T., and Lempicki, R. A. (2009a). Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 37, 1-13. doi: 10.1093/nar/gkn923
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1-13
-
-
Huang, D.A.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
15
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAViD bioinformatics resources
-
doi: 10.1038/nprot.2008.211
-
Huang, D. A. W., Sherman, B. T., and Lempicki, R. A. (2009b). Systematic and integrative analysis of large gene lists using DAViD bioinformatics resources. Nat. Protoc. 4, 44-57. doi: 10.1038/nprot.2008.211
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, D.A.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
16
-
-
80053520425
-
CCL2/MCP-i genotype-phenotype relationship in latent tuberculosis infection
-
doi: 10.1371/journal.pone.0025803
-
Hussain, R., Ansari, A., Talat, N., Hasan, Z., and Dawood, G. (2011). CCL2/MCP-i genotype-phenotype relationship in latent tuberculosis infection. PLoS ONE 6:e25803. doi: 10.1371/journal.pone.0025803
-
(2011)
PLoS ONE
, vol.6
-
-
Hussain, R.1
Ansari, A.2
Talat, N.3
Hasan, Z.4
Dawood, G.5
-
17
-
-
84884179172
-
A helicopter perspective on TB biomarkers: pathway and process based analysis of gene expression data provides new insight into TB pathogenesis
-
doi: 10.1371/journal.pone.0073230
-
Joosten, S. A., Fletcher, H. A., and Ottenhoff, T. H. (2013). A helicopter perspective on TB biomarkers: pathway and process based analysis of gene expression data provides new insight into TB pathogenesis. PLoS ONE 8:e73230. doi: 10.1371/journal.pone.0073230
-
(2013)
PLoS ONE
, vol.8
-
-
Joosten, S.A.1
Fletcher, H.A.2
Ottenhoff, T.H.3
-
18
-
-
0006407254
-
Winbugs-a bayesian modelling framework: concepts, structure, and extensibility
-
doi: 10.1023/A:1008929526011
-
Lunn, D. J., Thomas, A., Best, N., and Spiegelhalter, D. (2000). Winbugs-a bayesian modelling framework: concepts, structure, and extensibility. Stat. Comput. 10, 325-337. doi: 10.1023/A:1008929526011
-
(2000)
Stat. Comput.
, vol.10
, pp. 325-337
-
-
Lunn, D.J.1
Thomas, A.2
Best, N.3
Spiegelhalter, D.4
-
19
-
-
84874731468
-
Granuloma correlates of protection against tuberculosis and mechanisms of immune modulation by Mycobacterium tuberculosis
-
doi: 10.1093/infdis/jis778
-
Mehra, S., Alvarez, X., Didier, P. J., Doyle, L. A., Blanchard, J. L., Lackner, A. A., et al. (2013). Granuloma correlates of protection against tuberculosis and mechanisms of immune modulation by Mycobacterium tuberculosis. J. Infect. Dis. 207, 1115-1127. doi: 10.1093/infdis/jis778
-
(2013)
J. Infect. Dis.
, vol.207
, pp. 1115-1127
-
-
Mehra, S.1
Alvarez, X.2
Didier, P.J.3
Doyle, L.A.4
Blanchard, J.L.5
Lackner, A.A.6
-
20
-
-
79960650456
-
Reactivation of latent tuberculosis in rhesus macaques by coinfection with simian immunodeficiency virus
-
doi: 10.1111/j.1600-0684.2011.00485.x
-
Mehra, S., Golden, N. A., Dutta, N. K., Midkiff, C. C., Alvarez, X., Doyle, L. A., et al. (2011). Reactivation of latent tuberculosis in rhesus macaques by coinfection with simian immunodeficiency virus. J. Med. Primatol. 40, 233-243. doi: 10.1111/j.1600-0684.2011.00485.x
-
(2011)
J. Med. Primatol.
, vol.40
, pp. 233-243
-
-
Mehra, S.1
Golden, N.A.2
Dutta, N.K.3
Midkiff, C.C.4
Alvarez, X.5
Doyle, L.A.6
-
21
-
-
77958003946
-
Transcriptional reprogramming in nonhuman primate (rhesus macaque) tuberculosis granulomas
-
doi: 10.1371/journal.pone.0012266
-
Mehra, S., Pahar, B., Dutta, N. K., Conerly, C. N., Philippi-Falkenstein, K., Alvarez, X., et al. (2010). Transcriptional reprogramming in nonhuman primate (rhesus macaque) tuberculosis granulomas. PLoS ONE 5:e12266. doi: 10.1371/journal.pone.0012266
-
(2010)
PLoS ONE
, vol.5
-
-
Mehra, S.1
Pahar, B.2
Dutta, N.K.3
Conerly, C.N.4
Philippi-Falkenstein, K.5
Alvarez, X.6
-
22
-
-
84858737486
-
Ten challenges for TB biomarkers
-
doi: 10.1016/S1472-9792(12)70007-0
-
Ottenhoff, T. H., Ellner, J. J., and Kaufmann, S. H. (2012). Ten challenges for TB biomarkers. Tuberculosis 92(Suppl. 1), 17-20. doi: 10.1016/S1472-9792(12)70007-0
-
(2012)
Tuberculosis
, vol.92
, Issue.SUPPL. 1
, pp. 17-20
-
-
Ottenhoff, T.H.1
Ellner, J.J.2
Kaufmann, S.H.3
-
23
-
-
2942534096
-
Integrated modeling of clinical and gene expression information for personalized prediction of disease outcomes
-
doi: 10.1073/pnas.0401736101
-
Pittman, J., Huang, E., Dressman, H., Horng, C.-F., Cheng, S. H., Tsou, M.-H., et al. (2004). Integrated modeling of clinical and gene expression information for personalized prediction of disease outcomes. Proc. Natl. Acad. Sci. U.S.A. 101, 8431-8436. doi: 10.1073/pnas.0401736101
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 8431-8436
-
-
Pittman, J.1
Huang, E.2
Dressman, H.3
Horng, C.-F.4
Cheng, S.H.5
Tsou, M.-H.6
-
24
-
-
84873385585
-
CXCR5 T helper cells mediate protective immunity against tuberculosis
-
doi: 10.1172/JCI65728
-
Slight, S. R., Rangel-Moreno, J., Gopal, R., Lin, Y., Fallert Junecko, B. A., Mehra, S., et al. (2013). CXCR5 T helper cells mediate protective immunity against tuberculosis. J. Clin. Invest. 123, 712-726. doi: 10.1172/JCI65728
-
(2013)
J. Clin. Invest.
, vol.123
, pp. 712-726
-
-
Slight, S.R.1
Rangel-Moreno, J.2
Gopal, R.3
Lin, Y.4
Fallert Junecko, B.A.5
Mehra, S.6
-
25
-
-
33644872577
-
Limma: linear models for microarray data
-
eds R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, and W. Huber (New York, NY: Springer)
-
Smyth, G. K. (2005). "Limma: linear models for microarray data," in Bioinformatics and Computational Biology Solutions Using R and Bioconductor, eds R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, and W. Huber (New York, NY: Springer), 397-420.
-
(2005)
Bioinformatics and Computational Biology Solutions Using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
-
26
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
doi: 10.2202/1544-6115.1027
-
Smyth, G. K. (2004). Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3, 3. doi: 10.2202/1544-6115.1027
-
(2004)
Stat. Appl. Genet. Mol. Biol.
, vol.3
, pp. 3
-
-
Smyth, G.K.1
-
27
-
-
77952892091
-
Biomarkers and diagnostics for tuberculosis: progress, needs, and translation into practice
-
doi: 10.1016/S0140-6736(10)60359-5
-
Wallis, R. S., Pai, M., Menzies, D., Doherty, T. M., Walzl, G., Perkins, M. D., et al. (2010). Biomarkers and diagnostics for tuberculosis: progress, needs, and translation into practice. Lancet 375, 1920-1937. doi: 10.1016/S0140-6736(10)60359-5
-
(2010)
Lancet
, vol.375
, pp. 1920-1937
-
-
Wallis, R.S.1
Pai, M.2
Menzies, D.3
Doherty, T.M.4
Walzl, G.5
Perkins, M.D.6
-
28
-
-
79955480087
-
Immunological biomarkers of tuberculosis
-
doi: 10.1038/nri2960
-
Walzl, G., Ronacher, K., Hanekom, W., Scriba, T. J., and Zumla, A. (2011). Immunological biomarkers of tuberculosis. Nat. Rev. Immunol. 11, 343-354. doi: 10.1038/nri2960
-
(2011)
Nat. Rev. Immunol.
, vol.11
, pp. 343-354
-
-
Walzl, G.1
Ronacher, K.2
Hanekom, W.3
Scriba, T.J.4
Zumla, A.5
|