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Volumn 4, Issue , 2014, Pages

Using RNA-seq and targeted nucleases to identify mechanisms of drug resistance in acute myeloid leukemia

Author keywords

[No Author keywords available]

Indexed keywords

ANTINEOPLASTIC ANTIMETABOLITE; CYTARABINE; PROTEIN SERINE THREONINE KINASE; SMALL INTERFERING RNA;

EID: 84906069052     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep06048     Document Type: Article
Times cited : (29)

References (33)
  • 1
    • 84055218304 scopus 로고    scopus 로고
    • Acute myeloid leukemia: 2012 update on diagnosis, risk stratification, and management
    • Estey, E. H. Acute myeloid leukemia: 2012 update on diagnosis, risk stratification, and management. Am J Hematol 87, 89-99 (2012).
    • (2012) Am J Hematol , vol.87 , pp. 89-99
    • Estey, E.H.1
  • 3
    • 9244234326 scopus 로고    scopus 로고
    • Association between single nucleotide polymorphisms in deoxycytidine kinase and treatment response among acute myeloid leukaemia patients
    • Shi, J. Y. et al. Association between single nucleotide polymorphisms in deoxycytidine kinase and treatment response among acute myeloid leukaemia patients. Pharmacogenetics 14, 759-68 (2004).
    • (2004) Pharmacogenetics , vol.14 , pp. 759-768
    • Shi, J.Y.1
  • 4
    • 0034663307 scopus 로고    scopus 로고
    • High incidence of alternatively spliced forms of deoxycytidine kinase in patients with resistant acute myeloid leukemia
    • Veuger, M. J., Honders, M. W., Landegent, J. E., Willemze, R. & Barge, R. M. High incidence of alternatively spliced forms of deoxycytidine kinase in patients with resistant acute myeloid leukemia. Blood 96, 1517-24 (2000). (Pubitemid 30658485)
    • (2000) Blood , vol.96 , Issue.4 , pp. 1517-1524
    • Veuger, M.J.T.1    Honders, M.W.2    Landegent, J.E.3    Willemze, R.4    Barge, R.M.Y.5
  • 5
    • 67649449952 scopus 로고    scopus 로고
    • Defective expression of deoxycytidine kinase in cytarabineresistant acute myeloid leukemia cells
    • Song, J. H. et al. Defective expression of deoxycytidine kinase in cytarabineresistant acute myeloid leukemia cells. Int J Oncol 34, 1165-71 (2009).
    • (2009) Int J Oncol , vol.34 , pp. 1165-1171
    • Song, J.H.1
  • 6
    • 77955715010 scopus 로고    scopus 로고
    • Deoxycytidine kinase is downregulated in Ara-C-resistant acute myeloid leukemia murine cell lines
    • Rathe, S. K. & Largaespada, D. A. Deoxycytidine kinase is downregulated in Ara-C-resistant acute myeloid leukemia murine cell lines. Leukemia 24, 1513-5 (2010).
    • (2010) Leukemia , vol.24 , pp. 1513-1515
    • Rathe, S.K.1    Largaespada, D.A.2
  • 7
    • 0036757209 scopus 로고    scopus 로고
    • Deoxycytidine kinase expression and activity in patients with resistant versus sensitive acute myeloid leukemia
    • DOI 10.1034/j.1600-0609.2002.02785.x
    • Veuger, M. J., Honders, M. W., Willemze, R. & Barge, R. M. Deoxycytidine kinase expression and activity in patients with resistant versus sensitive acute myeloid leukemia. Eur J Haematol 69, 171-8 (2002). (Pubitemid 35335155)
    • (2002) European Journal of Haematology , vol.69 , Issue.3 , pp. 171-178
    • Veuger, M.J.T.1    Honders, M.W.2    Willemze, R.3    Barge, R.M.Y.4
  • 8
    • 33646108135 scopus 로고    scopus 로고
    • Trp53 loss during in vitro selection contributes to acquired Ara-Cresistance in acute myeloid leukemia
    • Yin, B., Kogan, S. C., Dickins, R. A., Lowe, S. W. & Largaespada, D. A. Trp53 loss during in vitro selection contributes to acquired Ara-Cresistance in acute myeloid leukemia. Exp Hematol 34, 631-41 (2006).
    • (2006) Exp Hematol , vol.34 , pp. 631-641
    • Yin, B.1    Kogan, S.C.2    Dickins, R.A.3    Lowe, S.W.4    Largaespada, D.A.5
  • 9
    • 80051941094 scopus 로고    scopus 로고
    • Identification of novel transcripts in annotated genomes using RNA-Seq
    • Roberts, A., Pimentel, H., Trapnell, C. & Pachter, L. Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics 27, 2325-9 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 2325-2329
    • Roberts, A.1    Pimentel, H.2    Trapnell, C.3    Pachter, L.4
  • 10
  • 11
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28, 511-5 (2010).
    • (2010) Nat Biotechnol , vol.28 , pp. 511-515
    • Trapnell, C.1
  • 12
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • DOI 10.1038/nmeth.1226, PII NMETH.1226
    • Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L. & Wold, B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5, 621-8 (2008). (Pubitemid 351911867)
    • (2008) Nature Methods , vol.5 , Issue.7 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 13
    • 84883480306 scopus 로고    scopus 로고
    • MMuFLR: Missense mutation and frameshift location reporter
    • Rathe, S. K. et al. MMuFLR: Missense Mutation and Frameshift Location Reporter. Bioinformatics 29, 2353-4 (2013).
    • (2013) Bioinformatics , vol.29 , pp. 2353-2354
    • Rathe, S.K.1
  • 14
    • 75949108066 scopus 로고    scopus 로고
    • Galaxy: A web-based genome analysis tool for experimentalists
    • Chapter 19, Unit 19 10 1-21
    • Blankenberg, D. et al. Galaxy: a web-based genome analysis tool for experimentalists. Curr Protoc Mol Biol Chapter 19, Unit 19 10 1-21 (2010).
    • (2010) Curr Protoc Mol Biol
    • Blankenberg, D.1
  • 16
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Goecks, J., Nekrutenko, A. & Taylor, J. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 11, R86 (2010).
    • (2010) Genome Biol , vol.11
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 17
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memoryefficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol 10, R25 (2009).
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 18
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell, C., Pachter, L. & Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-11 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 19
    • 77951640946 scopus 로고    scopus 로고
    • A method and server for predicting damaging missense mutations
    • Adzhubei, I. A. et al. A method and server for predicting damaging missense mutations. Nat Methods 7, 248-9 (2010).
    • (2010) Nat Methods , vol.7 , pp. 248-249
    • Adzhubei, I.A.1
  • 20
    • 84867301515 scopus 로고    scopus 로고
    • Predicting the functional effect of amino acid substitutions and indels
    • Choi, Y., Sims, G. E., Murphy, S., Miller, J. R. & Chan, A. P. Predicting the functional effect of amino acid substitutions and indels. PLoS One 7, e46688 (2012).
    • (2012) PLoS One , vol.7
    • Choi, Y.1    Sims, G.E.2    Murphy, S.3    Miller, J.R.4    Chan, A.P.5
  • 21
    • 79957829805 scopus 로고    scopus 로고
    • DeFuse: An algorithm for gene fusion discovery in tumor RNA-Seq data
    • McPherson, A. et al. deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data. PLoS Comput Biol 7, e1001138 (2011).
    • (2011) PLoS Comput Biol , vol.7
    • McPherson, A.1
  • 22
    • 50049105739 scopus 로고    scopus 로고
    • Gemcitabine pharmacogenomics: Deoxycytidine kinase and cytidylate kinase gene resequencing and functional genomics
    • Kocabas, N. A. et al. Gemcitabine pharmacogenomics: deoxycytidine kinase and cytidylate kinase gene resequencing and functional genomics. Drug Metab Dispos 36, 1951-9 (2008).
    • (2008) Drug Metab Dispos , vol.36 , pp. 1951-1959
    • Kocabas, N.A.1
  • 23
    • 77954049450 scopus 로고    scopus 로고
    • Improving sequencing quality from PCR products containing long mononucleotide repeats
    • Fazekas, A., Steeves, R. & Newmaster, S. Improving sequencing quality from PCR products containing long mononucleotide repeats. Biotechniques 48, 277-85 (2010).
    • (2010) Biotechniques , vol.48 , pp. 277-285
    • Fazekas, A.1    Steeves, R.2    Newmaster, S.3
  • 24
    • 77949481052 scopus 로고    scopus 로고
    • Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
    • Bullard, J. H., Purdom, E., Hansen, K. D. & Dudoit, S. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics 11, 94 (2010).
    • (2010) BMC Bioinformatics , vol.11 , pp. 94
    • Bullard, J.H.1    Purdom, E.2    Hansen, K.D.3    Dudoit, S.4
  • 25
    • 84880570576 scopus 로고    scopus 로고
    • High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells
    • Fu, Y. et al. High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat Biotechnol 31, 822-6 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 822-826
    • Fu, Y.1
  • 26
    • 84884160273 scopus 로고    scopus 로고
    • CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering
    • Mali, P. et al. CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering. Nat Biotechnol 31, 833-8 (2013).
    • (2013) Nat Biotechnol , vol.31 , pp. 833-838
    • Mali, P.1
  • 27
    • 58149240152 scopus 로고    scopus 로고
    • Prediction of molecular subtypes in acute myeloid leukemia based on gene expression profiling
    • Verhaak, R. G. et al. Prediction of molecular subtypes in acute myeloid leukemia based on gene expression profiling. Haematologica 94, 131-4 (2009).
    • (2009) Haematologica , vol.94 , pp. 131-134
    • Verhaak, R.G.1
  • 28
    • 0029074056 scopus 로고
    • Retroviral integration at the Evi-2 locus in BXH-2 myeloid leukemia cell lines disrupts Nf1 expression without changes in steady-state Ras-GTP levels
    • Largaespada, D. A., Shaughnessy, J. D., Jr., Jenkins, N. A. & Copeland, N. G. Retroviral integration at the Evi-2 locus in BXH-2 myeloid leukemia cell lines disrupts Nf1 expression without changes in steady-state Ras-GTP levels. J Virol 69, 5095-102 (1995).
    • (1995) J Virol , vol.69 , pp. 5095-5102
    • Largaespada, D.A.1    Shaughnessy Jr., J.D.2    Jenkins, N.A.3    Copeland, N.G.4
  • 29
    • 84900447061 scopus 로고    scopus 로고
    • Simple and efficientmethods for enrichment and isolation of endonuclease modified cells
    • Moriarity, B. S. et al. Simple and efficientmethods for enrichment and isolation of endonuclease modified cells. PLoS One 9, e96114 (2014).
    • (2014) PLoS One , vol.9
    • Moriarity, B.S.1
  • 30
    • 77957754251 scopus 로고    scopus 로고
    • A rapid and general assay for monitoring endogenous gene modification
    • Guschin, D. Y. et al. A rapid and general assay for monitoring endogenous gene modification. Methods Mol Biol 649, 247-56 (2010).
    • (2010) Methods Mol Biol , vol.649 , pp. 247-256
    • Guschin, D.Y.1
  • 31
    • 79960064013 scopus 로고    scopus 로고
    • Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting
    • Cermak, T. et al. Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res 39, e82 (2011).
    • (2011) Nucleic Acids Res , vol.39
    • Cermak, T.1
  • 32
    • 84867911474 scopus 로고    scopus 로고
    • Efficient TALEN-mediated gene knockout in livestock
    • Carlson, D. F. et al. Efficient TALEN-mediated gene knockout in livestock. Proc Natl Acad Sci U S A 109, 17382-7 (2012).
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 17382-17387
    • Carlson, D.F.1
  • 33
    • 84877293705 scopus 로고    scopus 로고
    • Modular assembly of transposon integratable multigene vectors using RecWay assembly
    • Moriarity, B. S. et al. Modular assembly of transposon integratable multigene vectors using RecWay assembly. Nucleic Acids Res 41, e92 (2013).
    • (2013) Nucleic Acids Res , vol.41
    • Moriarity, B.S.1


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