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Volumn , Issue , 2012, Pages 67-83

Base-calling for bioinformaticians

Author keywords

[No Author keywords available]

Indexed keywords

BASE CALLINGS; BIOINFORMATICIANS; HIGH THROUGHPUT; HIGH-THROUGHPUT SEQUENCING; ILLUMINA; OUTPUT SIGNAL; SIGNAL COMMUNICATION; THIRD PARTIES;

EID: 84905973983     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/9781461407829_5     Document Type: Chapter
Times cited : (2)

References (22)
  • 2
  • 3
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred ii error probabilities
    • Ewing B, Green P. 1998. Base-calling of automated sequencer traces using Phred II error probabilities. GenomeRes 8(3): 186-194.
    • (1998) Genomeres , vol.8 , Issue.3 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 4
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wendl MC, Green P. 1998. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8(3): 175-185.
    • (1998) Genome Res , vol.8 , Issue.3 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 5
    • 0032183889 scopus 로고    scopus 로고
    • Detection of stochastic processes
    • Kailath T, Poor HV. 1998. Detection of stochastic processes. IEEE T. Inform Theory 44(6): 2230-2259.
    • (1998) IEEE T. Inform Theory , vol.44 , Issue.6 , pp. 2230-2259
    • Kailath, T.1    Poor, H.V.2
  • 6
    • 79952389116 scopus 로고    scopus 로고
    • Aivebayescall: An efficient model-based base-calling algorithm for high-throughput sequencing
    • Kao WC, Song YS. 2011. naiveBayesCall: An Efficient Model-Based Base-Calling Algorithm for High-Throughput Sequencing. J Comput Biol 18(3): 365-377.
    • (2011) J Comput Biol , vol.18 , Issue.3 , pp. 365-377
    • Kao, W.C.1    Song, Y.S.2
  • 7
    • 70349646530 scopus 로고    scopus 로고
    • Bayescall: A model-based base-calling algorithm for high- throughput short-read sequencing
    • Kao WC, Stevens K, Song YS. 2009. BayesCall: A model-based base-calling algorithm for high- throughput short-read sequencing. Genome Res 19(10): 1884-1895.
    • (2009) Genome Res , vol.19 , Issue.10 , pp. 1884-1895
    • Kao, W.C.1    Stevens, K.2    Song, Y.S.3
  • 8
    • 70350023532 scopus 로고    scopus 로고
    • Improved base-calling for the illumina genome analyzer using machine learning strategies
    • Kircher M, Stenzel U, Kelso J. 2009. Improved base-calling for the Illumina Genome Analyzer using machine learning strategies. Genome Biol 10(8): R83.
    • (2009) Genome Biol , vol.10 , Issue.8 , pp. 83
    • Kircher, M.1    Stenzel, U.2    Kelso, J.3
  • 9
    • 77952745346 scopus 로고    scopus 로고
    • Bing: Biomedical informatics pipeline for next generation sequencing
    • Kriseman J, Busick C, Szelinger S, Dinu V. 2010. BING: biomedical informatics pipeline for Next Generation Sequencing. JBiomedInform 43(3): 428-434.
    • (2010) Jbiomedinform , vol.43 , Issue.3 , pp. 428-434
    • Kriseman, J.1    Busick, C.2    Szelinger, S.3    Dinu, V.4
  • 10
    • 80053194792 scopus 로고    scopus 로고
    • Base-calling for next-generation sequencing platforms
    • Ledergerber C, Dessimoz C. 2011. Base-calling for next-generation sequencing platforms. Brief Bioinform.
    • (2011) Brief Bioinform
    • Ledergerber, C.1    Dessimoz, C.2
  • 11
    • 0033062766 scopus 로고    scopus 로고
    • An estimate of the crosstalk matrix in four-dye fluorescence-based dna sequencing
    • Li L, Speed TP. 1999. An estimate of the crosstalk matrix in four-dye fluorescence-based DNA sequencing. Electrophoresis 20(7): 1433-1442.
    • (1999) Electrophoresis , vol.20 , Issue.7 , pp. 1433-1442
    • Li, L.1    Speed, T.P.2
  • 14
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - the next generation
    • Metzker ML. 2010. Sequencing technologies - the next generation. Nat Rev Genet 11(1): 31-46.
    • (2010) Nat Rev Genet , vol.11 , Issue.1 , pp. 31-46
    • Metzker, M.L.1
  • 15
    • 38749091304 scopus 로고    scopus 로고
    • Pyrobayes: An improved base caller for snp discovery in pyrosequences
    • Quinlan AR, Stewart DA, Stromberg MP, Marth GT. 2008. Pyrobayes: an improved base caller for SNP discovery in pyrosequences. Nat Methods 5(2): 179-181.
    • (2008) Nat Methods , vol.5 , Issue.2 , pp. 179-181
    • Quinlan, A.R.1    Stewart, D.A.2    Stromberg, M.P.3    Marth, G.T.4
  • 16
    • 77955136814 scopus 로고    scopus 로고
    • Contrasting gc-content dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes
    • Romiguier J, Ranwez V, Douzery EJ, Galtier N. 2010. Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes. Genome Res20(8): 1001-1009.
    • (2010) Genome Res , vol.20 , Issue.8 , pp. 1001-1009
    • Romiguier, J.1    Ranwez, V.2    Douzery, E.J.3    Galtier, N.4
  • 20
    • 57749195712 scopus 로고    scopus 로고
    • Rna-seq: A revolutionary tool for transcriptomics
    • Wang Z, Gerstein M, Snyder M. 2009. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10(1): 57-63.
    • (2009) Nat Rev Genet , vol.10 , Issue.1 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 22
    • 84890349503 scopus 로고    scopus 로고
    • Determination of the migration of bisphenol diglycidyl ethers from food contact materials by high performance chromatography-tandem mass spectrometry coupled with multi-walled carbon nanotubes solid phase extraction
    • Wu X, Ding L, Li Z, Zhang Y, Liu X, Wang L. 2010. Determination of the migration of bisphenol diglycidyl ethers from food contact materials by high performance chromatography-tandem mass spectrometry coupled with multi-walled carbon nanotubes solid phase extraction. Se Pu28(11): 1094-1098.
    • (2010) Se Pu , vol.28 , Issue.11 , pp. 1094-1098
    • Wu, X.1    Ding, L.2    Li, Z.3    Zhang, Y.4    Liu, X.5    Wang, L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.