An estimate of the crosstalk matrix in four-dye fluorescence-based DNA sequencing

Electrophoresis

Volumn 20, Issue 7, 1999, Pages 1433-1442

  Li, Lei ^a   Speed, Terence P ^b  

^a FLORIDA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Color correction; Crosstalk matrix; DNA sequencing; Electrophoresis

Indexed keywords

CAPILLARY ELECTROPHORESIS; COLOR; CROSSTALK; DATA HANDLING; DNA; DNA SEQUENCES; FLUORESCENCE; GENE ENCODING; ITERATIVE METHODS;

COLOR SEPARATION; COLOUR CORRECTIONS; CROSSTALK MATRIX; DNA SEQUENCING; DYE CONCENTRATION; FLUORESCENCE DETECTION; FLUORESCENCE INTENSITIES; ITERATIVE ALGORITHM; MATRIX; REPARAMETERIZATION;

MATRIX ALGEBRA;

ARTICLE; CAPILLARY ELECTROPHORESIS; COLOR; DNA SEQUENCE; FLUORESCENCE; INFORMATION PROCESSING;

EID: 0033062766     PISSN: 01730835     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1522-2683(19990601)20:7<1433::AID-ELPS1433>3.0.CO;2-0     Document Type: Article

References (16)

1. Adams, M. D., Fields, C., Ventor, J. C. (Eds.), Automated DNA Sequencing and Analysis, Academic Press, London, San Diego 1994.
2. Li, L., Statistical Models of DNA Base-Calling, PhD Thesis, University of California, Berkeley, 1998
3. Yin, Z., Severin, J., Giddings, M. C., Huang, W., Westphall, M. S., Smith, L. M., Electrophoresis 1996, 17, 1143-1150.
4. Kheterpal, I., Li, L., Speed, T. P., Mathies, R. A., Electrophoresis 1998, 19, 1403-1414.
5. Berno, A., Stein, L., Bass Manual, Stanford University, Palo Alto, 1995.
6. Huang, W., Yin, Z., Fuhrmann, D. R., States, D. J., Thomas, L. J., Electrophoresis 1997, 18, 23-25.
7. Huang, W., Fuhrmann, D. R., Politte, D. G., Yin, Z., States, D. J., IEEE Transact. Biomed. Engineer. 1998, 45, 422-429.
8. Ju, J., Kheterpal, I., Scherer, J. R., Ruan, C., Fuller, C. W., Glazer, A. N., Mathies, R. A., Anal. Biochem. 1995, 231, 131-140.
9. Ju, J., Ruan, C., Fuller, C. W. Glazer, A. N., Mathies, R. A., Proc. Natl. Acad. Sci. USA 1995, 92, 4347-4351.
10. Kheterpal, I., Scherer, J. R., Clark, S. M., Radhakrishnan, A., Ju, J., Ginther, C. L., Sensabaugh, G. F., Mathies, R. A., Electrophoresis 1996, 17, 1852-1859.
11. Hung, S. C., Ju, J. Y., Mathies, R. A., Glazer, A. N., Anal. Biochem. 1996, 243, 15-27.
12. Cutler, A., Breiman, L., Technometrics 1994, 36, 338-347.
13. Bloomfield, P., Steiger, W. L., Least Absolute Deviations: Theory, Applications, and Algorithms, Birkhäuser, Boston 1983.
14. Efron, B., Ann. Statistics 1979, 7, 1-26.
15. Efron, B., Tibshirani, R. J., An Introduction to the Bootstrap, Chapman & Hall, New York, London 1993.
16. Giddings, M. C., Severin, J., Westphall, M., Wu, J., Smith, L. M., Genome Res. 1998, 8, 644-665.