메뉴 건너뛰기




Volumn 34, Issue , 2013, Pages 35-45

PanCake: A data structure for pangenomes

Author keywords

Comparative genomics; Core genome; Data structure; Pangenome

Indexed keywords

BIOINFORMATICS; GENES;

EID: 84905862742     PISSN: 21906807     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.4230/OASIcs.GCB.2013.35     Document Type: Conference Paper
Times cited : (13)

References (15)
  • 3
    • 67649855126 scopus 로고    scopus 로고
    • Data structures and compression algorithms for genomic sequence data
    • M. C. Brandon, D. C. Wallace, and P. Baldi. Data structures and compression algorithms for genomic sequence data. Bioinformatics, 25(14):1731-1738, 2009.
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1731-1738
    • Brandon, M.C.1    Wallace, D.C.2    Baldi, P.3
  • 4
    • 80051918561 scopus 로고    scopus 로고
    • PGAT: A multistrain analysis resource for microbial genomes
    • M. J. Brittnacher, C. Fong, H. S. Hayden, et al. PGAT: A multistrain analysis resource for microbial genomes. Bioinformatics, 27(17):2429-2430, 2011.
    • (2011) Bioinformatics , vol.27 , Issue.17 , pp. 2429-2430
    • Brittnacher, M.J.1    Fong, C.2    Hayden, H.S.3
  • 6
    • 84878024791 scopus 로고    scopus 로고
    • Multiple genome comparison based on overlap regions of pairwise local alignments
    • K. Jahn, H. Sudek, and J. Stoye. Multiple genome comparison based on overlap regions of pairwise local alignments. BMC Bioinformatics, 13(Suppl 19):S7, 2012.
    • (2012) BMC Bioinformatics , vol.13 , Issue.SUPPL.. 19
    • Jahn, K.1    Sudek, H.2    Stoye, J.3
  • 9
    • 80055089620 scopus 로고    scopus 로고
    • An alternative approach to multiple genome comparison
    • A. Mancheron, R. Uricaru, and E. Rivals. An alternative approach to multiple genome comparison. Nucleic Acids Research, 39(15):e101, 2011.
    • (2011) Nucleic Acids Research , vol.39 , Issue.15
    • Mancheron, A.1    Uricaru, R.2    Rivals, E.3
  • 11
    • 77954611275 scopus 로고    scopus 로고
    • Using comparative genome analysis to identify problems in annotated microbial genomes
    • M. S. Poptsova and J. P. Gogarten. Using comparative genome analysis to identify problems in annotated microbial genomes. Microbiology, 156(7):1909-1917, 2010.
    • (2010) Microbiology , vol.156 , Issue.7 , pp. 1909-1917
    • Poptsova, M.S.1    Gogarten, J.P.2
  • 12
    • 74549221383 scopus 로고    scopus 로고
    • Annotation error in public databases: Misannotation of molecular function in enzyme superfamilies
    • A. M. Schnoes, S. D. Brown, I. Dodevski, and P. C. Babbitt. Annotation error in public databases: Misannotation of molecular function in enzyme superfamilies. PLoS Computational Biology, 5(12), 2009.
    • (2009) PLoS Computational Biology , vol.5 , Issue.12
    • Schnoes, A.M.1    Brown, S.D.2    Dodevski, I.3    Babbitt, P.C.4
  • 13
    • 25444524604 scopus 로고    scopus 로고
    • Genome analysis of multiple pathogenic isolates of streptococcus agalactiae: Implications for the microbial pan-genome
    • H. Tettelin, V. Masignani, M. J. Cieslewicz, et al. Genome analysis of multiple pathogenic isolates of streptococcus agalactiae: implications for the microbial "pan-genome". Proc. Natl. Acad. Sci., 102(39):13950-13955, 2005.
    • (2005) Proc. Natl. Acad. Sci. , vol.102 , Issue.39 , pp. 13950-13955
    • Tettelin, H.1    Masignani, V.2    Cieslewicz, M.J.3
  • 14
    • 84863991677 scopus 로고    scopus 로고
    • Pangenomic study of corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia
    • E. Trost, J. Blom, S. C. Soares, et al. Pangenomic study of corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia. Journal of Bacteriology, 194(12):3199-3215, 2012.
    • (2012) Journal of Bacteriology , vol.194 , Issue.12 , pp. 3199-3215
    • Trost, E.1    Blom, J.2    Soares, S.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.