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Volumn 42, Issue 13, 2014, Pages 8369-8378

Single-molecule studies on the mechanical interplay between DNA supercoiling and H-NS DNA architectural properties

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE LIKE NUCLEOID STRUCTURING PROTEIN; NUCLEAR PROTEIN; NUCLEOID ASSOCIATED PROTEIN; SINGLE STRANDED DNA; UNCLASSIFIED DRUG;

EID: 84905581331     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku566     Document Type: Article
Times cited : (29)

References (54)
  • 2
    • 0000751914 scopus 로고
    • Self-linking and the Gauss integral in higher dimensions
    • White, J.H. White, J.H. (1969) Self-linking and the Gauss integral in higher dimensions. Am. J. Math., 91, 693-728.
    • (1969) Am. J. Math. , vol.91 , pp. 693-728
    • White, J.H.1    White, J.H.2
  • 5
    • 0023046634 scopus 로고
    • Extensive unwinding of the plasmid template during staged enzymatic initiation of DNA-replication from the origin of the Escherichia coli chromosome
    • Baker, T.A., Sekimizu, K., Funnell, B.E., and Kornberg, A. Baker, T.A., Sekimizu, K., Funnell, B.E., and Kornberg, A. (1986) Extensive unwinding of the plasmid template during staged enzymatic initiation of DNA-replication from the origin of the Escherichia coli chromosome. Cell, 45, 53-64.
    • (1986) Cell , vol.45 , pp. 53-64
    • Baker, T.A.1    Sekimizu, K.2    Funnell, B.E.3    Kornberg, A.4    Baker, T.A.5    Sekimizu, K.6    Funnell, B.E.7    Kornberg, A.8
  • 6
    • 0024578495 scopus 로고
    • DNA supercoiling and prokaryotic transcription
    • Pruss, G.J. and Drlica, K. Pruss, G.J. and Drlica, K. (1989) DNA supercoiling and prokaryotic transcription. Cell, 56, 521-523.
    • (1989) Cell , vol.56 , pp. 521-523
    • Pruss, G.J.1    Drlica, K.2    Pruss, G.J.3    Drlica, K.4
  • 8
    • 0024279845 scopus 로고
    • Transcription generates positively and negatively supercoiled domains in the template
    • Wu, H.Y., Shyy, S.H., Wang, J.C., and Liu, L.F. Wu, H.Y., Shyy, S.H., Wang, J.C., and Liu, L.F. (1988) Transcription generates positively and negatively supercoiled domains in the template. Cell, 53, 433-440.
    • (1988) Cell , vol.53 , pp. 433-440
    • Wu, H.Y.1    Shyy, S.H.2    Wang, J.C.3    Liu, L.F.4    Wu, H.Y.5    Shyy, S.H.6    Wang, J.C.7    Liu, L.F.8
  • 10
    • 0343240577 scopus 로고
    • Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling
    • Sinden, R.R. and Pettijohn, D.E. Sinden, R.R. and Pettijohn, D.E. (1981) Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling. Proc. Natl. Acad. Sci.-Biol., 78, 224-228.
    • (1981) Proc. Natl. Acad. Sci.-Biol. , vol.78 , pp. 224-228
    • Sinden, R.R.1    Pettijohn, D.E.2    Sinden, R.R.3    Pettijohn, D.E.4
  • 12
    • 76949089832 scopus 로고    scopus 로고
    • Bacterial nucleoid-associated proteins, nucleoid structure and gene expression
    • Dillon, S.C. and Dorman, C.J. Dillon, S.C. and Dorman, C.J. (2010) Bacterial nucleoid-associated proteins, nucleoid structure and gene expression. Nat. Rev. Microbiol., 8, 185-195.
    • (2010) Nat. Rev. Microbiol. , vol.8 , pp. 185-195
    • Dillon, S.C.1    Dorman, C.J.2    Dillon, S.C.3    Dorman, C.J.4
  • 17
    • 0027408394 scopus 로고
    • The Escherichia coli nucleoid protein H-NS functions directly as a transcriptional repressor
    • Ueguchi, C. and Mizuno, T. Ueguchi, C. and Mizuno, T. (1993) The Escherichia coli nucleoid protein H-NS functions directly as a transcriptional repressor. EMBO J., 12, 1039-1046.
    • (1993) EMBO J. , vol.12 , pp. 1039-1046
    • Ueguchi, C.1    Mizuno, T.2    Ueguchi, C.3    Mizuno, T.4
  • 18
    • 0030972952 scopus 로고    scopus 로고
    • H-NS: A modulator of environmentally regulated gene expression
    • Atlung, T. and Ingmer, H. Atlung, T. and Ingmer, H. (1997) H-NS: a modulator of environmentally regulated gene expression. Mol. Microbiol., 24, 7-17.
    • (1997) Mol. Microbiol. , vol.24 , pp. 7-17
    • Atlung, T.1    Ingmer, H.2    Atlung, T.3    Ingmer, H.4
  • 20
    • 0037381991 scopus 로고    scopus 로고
    • Increased bending rigidity of single DNA molecules by H-NS, a temperature and osmolarity sensor
    • Amit, R., Oppenheim, A.B., and Stavans, J. Amit, R., Oppenheim, A.B., and Stavans, J. (2003) Increased bending rigidity of single DNA molecules by H-NS, a temperature and osmolarity sensor. Biophys. J., 84, 2467-2473.
    • (2003) Biophys. J. , vol.84 , pp. 2467-2473
    • Amit, R.1    Oppenheim, A.B.2    Stavans, J.3    Amit, R.4    Oppenheim, A.B.5    Stavans, J.6
  • 21
    • 0034666271 scopus 로고    scopus 로고
    • H-NS mediated compaction of DNA visualised by atomic force microscopy
    • Dame, R.T., Wyman, C., and Goosen, N. Dame, R.T., Wyman, C., and Goosen, N. (2000) H-NS mediated compaction of DNA visualised by atomic force microscopy. Nucleic Acids Res., 28, 3504-3510.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 3504-3510
    • Dame, R.T.1    Wyman, C.2    Goosen, N.3    Dame, R.T.4    Wyman, C.5    Goosen, N.6
  • 23
    • 76749118994 scopus 로고    scopus 로고
    • A divalent switch drives H-NS/DNA-binding conformations between stiffening and bridging modes
    • Liu, Y., Chen, H., Kenney, L.J., and Yan, J. Liu, Y., Chen, H., Kenney, L.J., and Yan, J. (2010) A divalent switch drives H-NS/DNA-binding conformations between stiffening and bridging modes. Genes Dev., 24, 339-344.
    • (2010) Genes Dev. , vol.24 , pp. 339-344
    • Liu, Y.1    Chen, H.2    Kenney, L.J.3    Yan, J.4    Liu, Y.5    Chen, H.6    Kenney, L.J.7    Yan, J.8
  • 24
  • 26
    • 84864150307 scopus 로고    scopus 로고
    • Nucleoprotein filament formation is the structural basis for bacterial protein H-NS gene silencing
    • Lim, C.J., Lee, S.Y., Kenney, L.J., and Yan, J. Lim, C.J., Lee, S.Y., Kenney, L.J., and Yan, J. (2012) Nucleoprotein filament formation is the structural basis for bacterial protein H-NS gene silencing. Sci. Rep., 2, 509.
    • (2012) Sci. Rep. , vol.2 , pp. 509
    • Lim, C.J.1    Lee, S.Y.2    Kenney, L.J.3    Yan, J.4    Lim, C.J.5    Lee, S.Y.6    Kenney, L.J.7    Yan, J.8
  • 27
    • 78751479182 scopus 로고    scopus 로고
    • Salmonella enterica response regulator SsrB relieves H-NS silencing by displacing H-NS bound in polymerization mode and directly activates transcription
    • Walthers, D., Li, Y., Liu, Y.J., Anand, G., Yan, J., and Kenney, L.J. Walthers, D., Li, Y., Liu, Y.J., Anand, G., Yan, J., and Kenney, L.J. (2011) Salmonella enterica response regulator SsrB relieves H-NS silencing by displacing H-NS bound in polymerization mode and directly activates transcription. J. Biol. Chem., 286, 1895-1902.
    • (2011) J. Biol. Chem. , vol.286 , pp. 1895-1902
    • Walthers, D.1    Li, Y.2    Liu, Y.J.3    Anand, G.4    Yan, J.5    Kenney, L.J.6    Walthers, D.7    Li, Y.8    Liu, Y.J.9    Anand, G.10    Yan, J.11    Kenney, L.J.12
  • 28
    • 63449089710 scopus 로고    scopus 로고
    • A systematic in vitro study of nucleoprotein complexes formed by bacterial nucleoid-associated proteins revealing novel types of DNA organization
    • Maurer, S., Fritz, J., and Muskhelishvili, G. Maurer, S., Fritz, J., and Muskhelishvili, G. (2009) A systematic in vitro study of nucleoprotein complexes formed by bacterial nucleoid-associated proteins revealing novel types of DNA organization. J. Mol. Biol., 387, 1261-1276.
    • (2009) J. Mol. Biol. , vol.387 , pp. 1261-1276
    • Maurer, S.1    Fritz, J.2    Muskhelishvili, G.3    Maurer, S.4    Fritz, J.5    Muskhelishvili, G.6
  • 32
    • 19744364369 scopus 로고    scopus 로고
    • Extracting DNA twist rigidity from experimental supercoiling data
    • Neukirch, S. Neukirch, S. (2004) Extracting DNA twist rigidity from experimental supercoiling data. Phys. Rev. Lett., 93, 198107.
    • (2004) Phys. Rev. Lett. , vol.93 , pp. 198107
    • Neukirch, S.1    Neukirch, S.2
  • 33
    • 34548403896 scopus 로고    scopus 로고
    • Torque and dynamics of linking number relaxation in stretched supercoiled DNA
    • Marko, J.F. Marko, J.F. (2007) Torque and dynamics of linking number relaxation in stretched supercoiled DNA. Phys. Rev. E Stat. Nonlin. Soft. Matter Phys., 76, 021926.
    • (2007) Phys. Rev. e Stat. Nonlin. Soft. Matter Phys. , vol.76 , pp. 021926
    • Marko, J.F.1    Marko, J.F.2
  • 34
    • 79960647806 scopus 로고    scopus 로고
    • Analytical description of extension, torque, and supercoiling radius of a stretched twisted DNA
    • Neukirch, S. and Marko, J.F. Neukirch, S. and Marko, J.F. (2011) Analytical description of extension, torque, and supercoiling radius of a stretched twisted DNA. Phys. Rev. Lett., 106, .
    • (2011) Phys. Rev. Lett. , vol.106
    • Neukirch, S.1    Marko, J.F.2    Neukirch, S.3    Marko, J.F.4
  • 35
    • 33751098486 scopus 로고    scopus 로고
    • Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation
    • Dame, R.T., Noom, M.C., and Wuite, G.J. Dame, R.T., Noom, M.C., and Wuite, G.J. (2006) Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation. Nature, 444, 387-390.
    • (2006) Nature , vol.444 , pp. 387-390
    • Dame, R.T.1    Noom, M.C.2    Wuite, G.J.3    Dame, R.T.4    Noom, M.C.5    Wuite, G.J.6
  • 36
    • 84861445862 scopus 로고    scopus 로고
    • Gene 5.5 protein of bacteriophage T7 in complex with Escherichia coli nucleoid protein H-NS and transfer RNA masks transfer RNA priming in T7 DNA replication
    • Zhu, B., Lee, S.J., Tan, M., Wang, E.D., and Richardson, C.C. Zhu, B., Lee, S.J., Tan, M., Wang, E.D., and Richardson, C.C. (2012) Gene 5.5 protein of bacteriophage T7 in complex with Escherichia coli nucleoid protein H-NS and transfer RNA masks transfer RNA priming in T7 DNA replication. Proc. Natl. Acad. Sci. U.S.A., 109, 8050-8055.
    • (2012) Proc. Natl. Acad. Sci. U.S.A. , vol.109 , pp. 8050-8055
    • Zhu, B.1    Lee, S.J.2    Tan, M.3    Wang, E.D.4    Richardson, C.C.5    Zhu, B.6    Lee, S.J.7    Tan, M.8    Wang, E.D.9    Richardson, C.C.10
  • 37
    • 25144476232 scopus 로고    scopus 로고
    • A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure
    • Hardy, C.D. and Cozzarelli, N.R. Hardy, C.D. and Cozzarelli, N.R. (2005) A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure. Mol. Microbiol., 57, 1636-1652.
    • (2005) Mol. Microbiol. , vol.57 , pp. 1636-1652
    • Hardy, C.D.1    Cozzarelli, N.R.2    Hardy, C.D.3    Cozzarelli, N.R.4
  • 40
    • 84875439944 scopus 로고    scopus 로고
    • The nucleoid-associated protein Dan organizes chromosomal DNA through rigid nucleoprotein filament formation in E. Coli during anoxia
    • Lim, C.J., Lee, S.Y., Teramoto, J., Ishihama, A., and Yan, J. Lim, C.J., Lee, S.Y., Teramoto, J., Ishihama, A., and Yan, J. (2013) The nucleoid-associated protein Dan organizes chromosomal DNA through rigid nucleoprotein filament formation in E. Coli during anoxia. Nucleic Acids Res., 41, 746-753.
    • (2013) Nucleic Acids Res. , vol.41 , pp. 746-753
    • Lim, C.J.1    Lee, S.Y.2    Teramoto, J.3    Ishihama, A.4    Yan, J.5    Lim, C.J.6    Lee, S.Y.7    Teramoto, J.8    Ishihama, A.9    Yan, J.10
  • 43
    • 84879421049 scopus 로고    scopus 로고
    • Transcription-coupled DNA supercoiling in defined protein systems and in E. Coli topA mutant strains
    • Fulcrand, G., Zhi, X., and Leng, F. Fulcrand, G., Zhi, X., and Leng, F. (2013) Transcription-coupled DNA supercoiling in defined protein systems and in E. Coli topA mutant strains. IUBMB Life, 65, 615-622.
    • (2013) IUBMB Life , vol.65 , pp. 615-622
    • Fulcrand, G.1    Zhi, X.2    Leng, F.3    Fulcrand, G.4    Zhi, X.5    Leng, F.6
  • 44
  • 50
    • 84860359300 scopus 로고    scopus 로고
    • Gene silencing H-NS paralogue StpA forms a rigid protein filament along DNA that blocks DNA accessibility
    • Lim, C.J., Whang, Y.R., Kenney, L.J., and Yan, J. Lim, C.J., Whang, Y.R., Kenney, L.J., and Yan, J. (2012) Gene silencing H-NS paralogue StpA forms a rigid protein filament along DNA that blocks DNA accessibility. Nucleic Acids Res., 40, 3316-3328.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 3316-3328
    • Lim, C.J.1    Whang, Y.R.2    Kenney, L.J.3    Yan, J.4    Lim, C.J.5    Whang, Y.R.6    Kenney, L.J.7    Yan, J.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.