-
2
-
-
0000751914
-
Self-linking and the Gauss integral in higher dimensions
-
White, J.H. White, J.H. (1969) Self-linking and the Gauss integral in higher dimensions. Am. J. Math., 91, 693-728.
-
(1969)
Am. J. Math.
, vol.91
, pp. 693-728
-
-
White, J.H.1
White, J.H.2
-
3
-
-
0027367175
-
Chromosomal supercoiling in Escherichia coli
-
Miller, W.G. and Simons, R.W. Miller, W.G. and Simons, R.W. (1993) Chromosomal supercoiling in Escherichia coli. Mol. Microbiol., 10, 675-684.
-
(1993)
Mol. Microbiol.
, vol.10
, pp. 675-684
-
-
Miller, W.G.1
Simons, R.W.2
Miller, W.G.3
Simons, R.W.4
-
4
-
-
27744497440
-
A gyrase mutant with low activity disrupts supercoiling at the replication terminus
-
Pang, Z.H., Chen, R., Manna, D., and Higgins, N.P. Pang, Z.H., Chen, R., Manna, D., and Higgins, N.P. (2005) A gyrase mutant with low activity disrupts supercoiling at the replication terminus. J. Bacteriol., 187, 7773-7783.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 7773-7783
-
-
Pang, Z.H.1
Chen, R.2
Manna, D.3
Higgins, N.P.4
Pang, Z.H.5
Chen, R.6
Manna, D.7
Higgins, N.P.8
-
5
-
-
0023046634
-
Extensive unwinding of the plasmid template during staged enzymatic initiation of DNA-replication from the origin of the Escherichia coli chromosome
-
Baker, T.A., Sekimizu, K., Funnell, B.E., and Kornberg, A. Baker, T.A., Sekimizu, K., Funnell, B.E., and Kornberg, A. (1986) Extensive unwinding of the plasmid template during staged enzymatic initiation of DNA-replication from the origin of the Escherichia coli chromosome. Cell, 45, 53-64.
-
(1986)
Cell
, vol.45
, pp. 53-64
-
-
Baker, T.A.1
Sekimizu, K.2
Funnell, B.E.3
Kornberg, A.4
Baker, T.A.5
Sekimizu, K.6
Funnell, B.E.7
Kornberg, A.8
-
6
-
-
0024578495
-
DNA supercoiling and prokaryotic transcription
-
Pruss, G.J. and Drlica, K. Pruss, G.J. and Drlica, K. (1989) DNA supercoiling and prokaryotic transcription. Cell, 56, 521-523.
-
(1989)
Cell
, vol.56
, pp. 521-523
-
-
Pruss, G.J.1
Drlica, K.2
Pruss, G.J.3
Drlica, K.4
-
7
-
-
0023833060
-
A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. Typhimurium and E. Coli
-
Higgins, C.F., Dorman, C.J., Stirling, D.A., Waddell, L., Booth, I.R., May, G., and Bremer, E. Higgins, C.F., Dorman, C.J., Stirling, D.A., Waddell, L., Booth, I.R., May, G., and Bremer, E. (1988) A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. Coli. Cell, 52, 569-584.
-
(1988)
Cell
, vol.52
, pp. 569-584
-
-
Higgins, C.F.1
Dorman, C.J.2
Stirling, D.A.3
Waddell, L.4
Booth, I.R.5
May, G.6
Bremer, E.7
Higgins, C.F.8
Dorman, C.J.9
Stirling, D.A.10
Waddell, L.11
Booth, I.R.12
May, G.13
Bremer, E.14
-
8
-
-
0024279845
-
Transcription generates positively and negatively supercoiled domains in the template
-
Wu, H.Y., Shyy, S.H., Wang, J.C., and Liu, L.F. Wu, H.Y., Shyy, S.H., Wang, J.C., and Liu, L.F. (1988) Transcription generates positively and negatively supercoiled domains in the template. Cell, 53, 433-440.
-
(1988)
Cell
, vol.53
, pp. 433-440
-
-
Wu, H.Y.1
Shyy, S.H.2
Wang, J.C.3
Liu, L.F.4
Wu, H.Y.5
Shyy, S.H.6
Wang, J.C.7
Liu, L.F.8
-
9
-
-
0036038278
-
DNA supercoiling by gyrase is linked to nucleoid compaction
-
Stuger, R., Woldringh, C.L., van der Weijden, C.C., Vischer, N.O.E., Bakker, B.M., van Spanning, R.J.M., Snoep, J.L., and Westerhoff, H.V. Stuger, R., Woldringh, C.L., van der Weijden, C.C., Vischer, N.O.E., Bakker, B.M., van Spanning, R.J.M., Snoep, J.L., and Westerhoff, H.V. (2002) DNA supercoiling by gyrase is linked to nucleoid compaction. Mol. Biol. Rep., 29, 79-82.
-
(2002)
Mol. Biol. Rep.
, vol.29
, pp. 79-82
-
-
Stuger, R.1
Woldringh, C.L.2
Van Der Weijden, C.C.3
Vischer, N.O.E.4
Bakker, B.M.5
Van Spanning, R.J.M.6
Snoep, J.L.7
Westerhoff, H.V.8
Stuger, R.9
Woldringh, C.L.10
Van Der Weijden, C.C.11
Vischer, N.O.E.12
Bakker, B.M.13
Van Spanning, R.J.M.14
Snoep, J.L.15
Westerhoff, H.V.16
-
10
-
-
0343240577
-
Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling
-
Sinden, R.R. and Pettijohn, D.E. Sinden, R.R. and Pettijohn, D.E. (1981) Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling. Proc. Natl. Acad. Sci.-Biol., 78, 224-228.
-
(1981)
Proc. Natl. Acad. Sci.-Biol.
, vol.78
, pp. 224-228
-
-
Sinden, R.R.1
Pettijohn, D.E.2
Sinden, R.R.3
Pettijohn, D.E.4
-
11
-
-
84874192725
-
Organization and segregation of bacterial chromosomes
-
Wang, X.D., Llopis, P.M., and Rudner, D.Z. Wang, X.D., Llopis, P.M., and Rudner, D.Z. (2013) Organization and segregation of bacterial chromosomes. Nat. Rev. Genet., 14, 191-203.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 191-203
-
-
Wang, X.D.1
Llopis, P.M.2
Rudner, D.Z.3
Wang, X.D.4
Llopis, P.M.5
Rudner, D.Z.6
-
12
-
-
76949089832
-
Bacterial nucleoid-associated proteins, nucleoid structure and gene expression
-
Dillon, S.C. and Dorman, C.J. Dillon, S.C. and Dorman, C.J. (2010) Bacterial nucleoid-associated proteins, nucleoid structure and gene expression. Nat. Rev. Microbiol., 8, 185-195.
-
(2010)
Nat. Rev. Microbiol.
, vol.8
, pp. 185-195
-
-
Dillon, S.C.1
Dorman, C.J.2
Dillon, S.C.3
Dorman, C.J.4
-
13
-
-
78649640318
-
Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression
-
Browning, D.F., Grainger, D.C., and Busby, S.J. Browning, D.F., Grainger, D.C., and Busby, S.J. (2010) Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression. Curr. Opin. Microbiol., 13, 773-780.
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 773-780
-
-
Browning, D.F.1
Grainger, D.C.2
Busby, S.J.3
Browning, D.F.4
Grainger, D.C.5
Busby, S.J.6
-
14
-
-
0025135253
-
Histone-like protein H1 (H-NS), DNA supercoiling, and gene expression in bacteria
-
Hulton, C.S., Seirafi, A., Hinton, J.C., Sidebotham, J.M., Waddell, L., Pavitt, G.D., Owen-Hughes, T., Spassky, A., Buc, H., and Higgins, C.F. Hulton, C.S., Seirafi, A., Hinton, J.C., Sidebotham, J.M., Waddell, L., Pavitt, G.D., Owen-Hughes, T., Spassky, A., Buc, H., and Higgins, C.F. (1990) Histone-like protein H1 (H-NS), DNA supercoiling, and gene expression in bacteria. Cell, 63, 631-642.
-
(1990)
Cell
, vol.63
, pp. 631-642
-
-
Hulton, C.S.1
Seirafi, A.2
Hinton, J.C.3
Sidebotham, J.M.4
Waddell, L.5
Pavitt, G.D.6
Owen-Hughes, T.7
Spassky, A.8
Buc, H.9
Higgins, C.F.10
Hulton, C.S.11
Seirafi, A.12
Hinton, J.C.13
Sidebotham, J.M.14
Waddell, L.15
Pavitt, G.D.16
Owen-Hughes, T.17
Spassky, A.18
Buc, H.19
Higgins, C.F.20
more..
-
15
-
-
0028085068
-
The chromatin-associated protein H-NS alters DNA topology in vitro
-
Tupper, A.E., Owen-Hughes, T.A., Ussery, D.W., Santos, D.S., Ferguson, D.J., Sidebotham, J.M., Hinton, J.C., and Higgins, C.F. Tupper, A.E., Owen-Hughes, T.A., Ussery, D.W., Santos, D.S., Ferguson, D.J., Sidebotham, J.M., Hinton, J.C., and Higgins, C.F. (1994) The chromatin-associated protein H-NS alters DNA topology in vitro. EMBO J., 13, 258-268.
-
(1994)
EMBO J.
, vol.13
, pp. 258-268
-
-
Tupper, A.E.1
Owen-Hughes, T.A.2
Ussery, D.W.3
Santos, D.S.4
Ferguson, D.J.5
Sidebotham, J.M.6
Hinton, J.C.7
Higgins, C.F.8
Tupper, A.E.9
Owen-Hughes, T.A.10
Ussery, D.W.11
Santos, D.S.12
Ferguson, D.J.13
Sidebotham, J.M.14
Hinton, J.C.15
Higgins, C.F.16
-
16
-
-
0028589873
-
H-NS over-expression induces an artificial stationary phase by silencing global transcription
-
McGovern, V., Higgins, N.P., Chiz, R.S., and Jaworski, A. McGovern, V., Higgins, N.P., Chiz, R.S., and Jaworski, A. (1994) H-NS over-expression induces an artificial stationary phase by silencing global transcription. Biochimie, 76, 1019-1029.
-
(1994)
Biochimie
, vol.76
, pp. 1019-1029
-
-
McGovern, V.1
Higgins, N.P.2
Chiz, R.S.3
Jaworski, A.4
McGovern, V.5
Higgins, N.P.6
Chiz, R.S.7
Jaworski, A.8
-
17
-
-
0027408394
-
The Escherichia coli nucleoid protein H-NS functions directly as a transcriptional repressor
-
Ueguchi, C. and Mizuno, T. Ueguchi, C. and Mizuno, T. (1993) The Escherichia coli nucleoid protein H-NS functions directly as a transcriptional repressor. EMBO J., 12, 1039-1046.
-
(1993)
EMBO J.
, vol.12
, pp. 1039-1046
-
-
Ueguchi, C.1
Mizuno, T.2
Ueguchi, C.3
Mizuno, T.4
-
18
-
-
0030972952
-
H-NS: A modulator of environmentally regulated gene expression
-
Atlung, T. and Ingmer, H. Atlung, T. and Ingmer, H. (1997) H-NS: a modulator of environmentally regulated gene expression. Mol. Microbiol., 24, 7-17.
-
(1997)
Mol. Microbiol.
, vol.24
, pp. 7-17
-
-
Atlung, T.1
Ingmer, H.2
Atlung, T.3
Ingmer, H.4
-
19
-
-
33748055114
-
H-NS mediates the silencing of laterally acquired genes in bacteria
-
Lucchini, S., Rowley, G., Goldberg, M.D., Hurd, D., Harrison, M., and Hinton, J.C. Lucchini, S., Rowley, G., Goldberg, M.D., Hurd, D., Harrison, M., and Hinton, J.C. (2006) H-NS mediates the silencing of laterally acquired genes in bacteria. PLoS Pathog., 2, e81.
-
(2006)
PLoS Pathog.
, vol.2
-
-
Lucchini, S.1
Rowley, G.2
Goldberg, M.D.3
Hurd, D.4
Harrison, M.5
Hinton, J.C.6
Lucchini, S.7
Rowley, G.8
Goldberg, M.D.9
Hurd, D.10
Harrison, M.11
Hinton, J.C.12
-
20
-
-
0037381991
-
Increased bending rigidity of single DNA molecules by H-NS, a temperature and osmolarity sensor
-
Amit, R., Oppenheim, A.B., and Stavans, J. Amit, R., Oppenheim, A.B., and Stavans, J. (2003) Increased bending rigidity of single DNA molecules by H-NS, a temperature and osmolarity sensor. Biophys. J., 84, 2467-2473.
-
(2003)
Biophys. J.
, vol.84
, pp. 2467-2473
-
-
Amit, R.1
Oppenheim, A.B.2
Stavans, J.3
Amit, R.4
Oppenheim, A.B.5
Stavans, J.6
-
21
-
-
0034666271
-
H-NS mediated compaction of DNA visualised by atomic force microscopy
-
Dame, R.T., Wyman, C., and Goosen, N. Dame, R.T., Wyman, C., and Goosen, N. (2000) H-NS mediated compaction of DNA visualised by atomic force microscopy. Nucleic Acids Res., 28, 3504-3510.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3504-3510
-
-
Dame, R.T.1
Wyman, C.2
Goosen, N.3
Dame, R.T.4
Wyman, C.5
Goosen, N.6
-
22
-
-
77957683898
-
H-NS forms a superhelical protein scaffold for DNA condensation
-
Arold, S.T., Leonard, P.G., Parkinson, G.N., and Ladbury, J.E. Arold, S.T., Leonard, P.G., Parkinson, G.N., and Ladbury, J.E. (2010) H-NS forms a superhelical protein scaffold for DNA condensation. Proc. Natl. Acad. Sci. U.S.A., 107, 15 728-15 732.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 15728-15732
-
-
Arold, S.T.1
Leonard, P.G.2
Parkinson, G.N.3
Ladbury, J.E.4
Arold, S.T.5
Leonard, P.G.6
Parkinson, G.N.7
Ladbury, J.E.8
-
23
-
-
76749118994
-
A divalent switch drives H-NS/DNA-binding conformations between stiffening and bridging modes
-
Liu, Y., Chen, H., Kenney, L.J., and Yan, J. Liu, Y., Chen, H., Kenney, L.J., and Yan, J. (2010) A divalent switch drives H-NS/DNA-binding conformations between stiffening and bridging modes. Genes Dev., 24, 339-344.
-
(2010)
Genes Dev.
, vol.24
, pp. 339-344
-
-
Liu, Y.1
Chen, H.2
Kenney, L.J.3
Yan, J.4
Liu, Y.5
Chen, H.6
Kenney, L.J.7
Yan, J.8
-
24
-
-
0037127209
-
Structural basis for H-NS-mediated trapping of RNA polymerase in the open initiation complex at the rrnB P1
-
Dame, R.T., Wyman, C., Wurm, R., Wagner, R., and Goosen, N. Dame, R.T., Wyman, C., Wurm, R., Wagner, R., and Goosen, N. (2002) Structural basis for H-NS-mediated trapping of RNA polymerase in the open initiation complex at the rrnB P1. J. Biol. Chem., 277, 2146-2150.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 2146-2150
-
-
Dame, R.T.1
Wyman, C.2
Wurm, R.3
Wagner, R.4
Goosen, N.5
Dame, R.T.6
Wyman, C.7
Wurm, R.8
Wagner, R.9
Goosen, N.10
-
25
-
-
35549009343
-
High-affinity DNA binding sites for H-NS provide a molecular basis for selective silencing within proteobacterial genomes
-
Lang, B., Blot, N., Bouffartigues, E., Buckle, M., Geertz, M., Gualerzi, C.O., Mavathur, R., Muskhelishvili, G., Pon, C.L., and Rimsky, S. et al. Lang, B., Blot, N., Bouffartigues, E., Buckle, M., Geertz, M., Gualerzi, C.O., Mavathur, R., Muskhelishvili, G., Pon, C.L., and Rimsky, S. (2007) High-affinity DNA binding sites for H-NS provide a molecular basis for selective silencing within proteobacterial genomes. Nucleic Acids Res., 35, 6330-6337.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 6330-6337
-
-
Lang, B.1
Blot, N.2
Bouffartigues, E.3
Buckle, M.4
Geertz, M.5
Gualerzi, C.O.6
Mavathur, R.7
Muskhelishvili, G.8
Pon, C.L.9
Rimsky, S.10
Lang, B.11
Blot, N.12
Bouffartigues, E.13
Buckle, M.14
Geertz, M.15
Gualerzi, C.O.16
Mavathur, R.17
Muskhelishvili, G.18
Pon, C.L.19
Rimsky, S.20
more..
-
26
-
-
84864150307
-
Nucleoprotein filament formation is the structural basis for bacterial protein H-NS gene silencing
-
Lim, C.J., Lee, S.Y., Kenney, L.J., and Yan, J. Lim, C.J., Lee, S.Y., Kenney, L.J., and Yan, J. (2012) Nucleoprotein filament formation is the structural basis for bacterial protein H-NS gene silencing. Sci. Rep., 2, 509.
-
(2012)
Sci. Rep.
, vol.2
, pp. 509
-
-
Lim, C.J.1
Lee, S.Y.2
Kenney, L.J.3
Yan, J.4
Lim, C.J.5
Lee, S.Y.6
Kenney, L.J.7
Yan, J.8
-
27
-
-
78751479182
-
Salmonella enterica response regulator SsrB relieves H-NS silencing by displacing H-NS bound in polymerization mode and directly activates transcription
-
Walthers, D., Li, Y., Liu, Y.J., Anand, G., Yan, J., and Kenney, L.J. Walthers, D., Li, Y., Liu, Y.J., Anand, G., Yan, J., and Kenney, L.J. (2011) Salmonella enterica response regulator SsrB relieves H-NS silencing by displacing H-NS bound in polymerization mode and directly activates transcription. J. Biol. Chem., 286, 1895-1902.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 1895-1902
-
-
Walthers, D.1
Li, Y.2
Liu, Y.J.3
Anand, G.4
Yan, J.5
Kenney, L.J.6
Walthers, D.7
Li, Y.8
Liu, Y.J.9
Anand, G.10
Yan, J.11
Kenney, L.J.12
-
28
-
-
63449089710
-
A systematic in vitro study of nucleoprotein complexes formed by bacterial nucleoid-associated proteins revealing novel types of DNA organization
-
Maurer, S., Fritz, J., and Muskhelishvili, G. Maurer, S., Fritz, J., and Muskhelishvili, G. (2009) A systematic in vitro study of nucleoprotein complexes formed by bacterial nucleoid-associated proteins revealing novel types of DNA organization. J. Mol. Biol., 387, 1261-1276.
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 1261-1276
-
-
Maurer, S.1
Fritz, J.2
Muskhelishvili, G.3
Maurer, S.4
Fritz, J.5
Muskhelishvili, G.6
-
29
-
-
0037109057
-
Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior
-
Adelman, K., La Porta, A., Santangelo, T.J., Lis, J.T., Roberts, J.W., and Wang, M.D. Adelman, K., La Porta, A., Santangelo, T.J., Lis, J.T., Roberts, J.W., and Wang, M.D. (2002) Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior. Proc. Natl. Acad. Sci. U.S.A., 99, 13538-13543.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 13538-13543
-
-
Adelman, K.1
La Porta, A.2
Santangelo, T.J.3
Lis, J.T.4
Roberts, J.W.5
Wang, M.D.6
Adelman, K.7
La Porta, A.8
Santangelo, T.J.9
Lis, J.T.10
Roberts, J.W.11
Wang, M.D.12
-
30
-
-
78650226062
-
A new method for the covalent attachment of DNA to a surface for single-molecule studies
-
Schlingman, D.J., Mack, A.H., Mochrie, S.G.J., and Regan, L. Schlingman, D.J., Mack, A.H., Mochrie, S.G.J., and Regan, L. (2011) A new method for the covalent attachment of DNA to a surface for single-molecule studies. Colloid Surface B, 83, 91-95.
-
(2011)
Colloid Surface B
, vol.83
, pp. 91-95
-
-
Schlingman, D.J.1
Mack, A.H.2
Mochrie, S.G.J.3
Regan, L.4
Schlingman, D.J.5
Mack, A.H.6
Mochrie, S.G.J.7
Regan, L.8
-
31
-
-
0029937922
-
The elasticity of a single supercoiled DNA molecule
-
Strick, T.R., Allemand, J.F., Bensimon, D., Bensimon, A., and Croquette, V. Strick, T.R., Allemand, J.F., Bensimon, D., Bensimon, A., and Croquette, V. (1996) The elasticity of a single supercoiled DNA molecule. Science, 271, 1835-1837.
-
(1996)
Science
, vol.271
, pp. 1835-1837
-
-
Strick, T.R.1
Allemand, J.F.2
Bensimon, D.3
Bensimon, A.4
Croquette, V.5
Strick, T.R.6
Allemand, J.F.7
Bensimon, D.8
Bensimon, A.9
Croquette, V.10
-
32
-
-
19744364369
-
Extracting DNA twist rigidity from experimental supercoiling data
-
Neukirch, S. Neukirch, S. (2004) Extracting DNA twist rigidity from experimental supercoiling data. Phys. Rev. Lett., 93, 198107.
-
(2004)
Phys. Rev. Lett.
, vol.93
, pp. 198107
-
-
Neukirch, S.1
Neukirch, S.2
-
33
-
-
34548403896
-
Torque and dynamics of linking number relaxation in stretched supercoiled DNA
-
Marko, J.F. Marko, J.F. (2007) Torque and dynamics of linking number relaxation in stretched supercoiled DNA. Phys. Rev. E Stat. Nonlin. Soft. Matter Phys., 76, 021926.
-
(2007)
Phys. Rev. e Stat. Nonlin. Soft. Matter Phys.
, vol.76
, pp. 021926
-
-
Marko, J.F.1
Marko, J.F.2
-
34
-
-
79960647806
-
Analytical description of extension, torque, and supercoiling radius of a stretched twisted DNA
-
Neukirch, S. and Marko, J.F. Neukirch, S. and Marko, J.F. (2011) Analytical description of extension, torque, and supercoiling radius of a stretched twisted DNA. Phys. Rev. Lett., 106, .
-
(2011)
Phys. Rev. Lett.
, vol.106
-
-
Neukirch, S.1
Marko, J.F.2
Neukirch, S.3
Marko, J.F.4
-
35
-
-
33751098486
-
Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation
-
Dame, R.T., Noom, M.C., and Wuite, G.J. Dame, R.T., Noom, M.C., and Wuite, G.J. (2006) Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation. Nature, 444, 387-390.
-
(2006)
Nature
, vol.444
, pp. 387-390
-
-
Dame, R.T.1
Noom, M.C.2
Wuite, G.J.3
Dame, R.T.4
Noom, M.C.5
Wuite, G.J.6
-
36
-
-
84861445862
-
Gene 5.5 protein of bacteriophage T7 in complex with Escherichia coli nucleoid protein H-NS and transfer RNA masks transfer RNA priming in T7 DNA replication
-
Zhu, B., Lee, S.J., Tan, M., Wang, E.D., and Richardson, C.C. Zhu, B., Lee, S.J., Tan, M., Wang, E.D., and Richardson, C.C. (2012) Gene 5.5 protein of bacteriophage T7 in complex with Escherichia coli nucleoid protein H-NS and transfer RNA masks transfer RNA priming in T7 DNA replication. Proc. Natl. Acad. Sci. U.S.A., 109, 8050-8055.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 8050-8055
-
-
Zhu, B.1
Lee, S.J.2
Tan, M.3
Wang, E.D.4
Richardson, C.C.5
Zhu, B.6
Lee, S.J.7
Tan, M.8
Wang, E.D.9
Richardson, C.C.10
-
37
-
-
25144476232
-
A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure
-
Hardy, C.D. and Cozzarelli, N.R. Hardy, C.D. and Cozzarelli, N.R. (2005) A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure. Mol. Microbiol., 57, 1636-1652.
-
(2005)
Mol. Microbiol.
, vol.57
, pp. 1636-1652
-
-
Hardy, C.D.1
Cozzarelli, N.R.2
Hardy, C.D.3
Cozzarelli, N.R.4
-
38
-
-
84871815721
-
Alba shapes the archaeal genome using a delicate balance of bridging and stiffening the DNA
-
Laurens, N., Driessen, R.P., Heller, I., Vorselen, D., Noom, M.C., Hol, F.J., White, M.F., Dame, R.T., and Wuite, G.J. Laurens, N., Driessen, R.P., Heller, I., Vorselen, D., Noom, M.C., Hol, F.J., White, M.F., Dame, R.T., and Wuite, G.J. (2012) Alba shapes the archaeal genome using a delicate balance of bridging and stiffening the DNA. Nat. Commun., 3, 1328.
-
(2012)
Nat. Commun.
, vol.3
, pp. 1328
-
-
Laurens, N.1
Driessen, R.P.2
Heller, I.3
Vorselen, D.4
Noom, M.C.5
Hol, F.J.6
White, M.F.7
Dame, R.T.8
Wuite, G.J.9
Laurens, N.10
Driessen, R.P.11
Heller, I.12
Vorselen, D.13
Noom, M.C.14
Hol, F.J.15
White, M.F.16
Dame, R.T.17
Wuite, G.J.18
-
39
-
-
78049422210
-
Modulation of HU-DNA interactions by salt concentration and applied force
-
Xiao, B., Johnson, R.C., and Marko, J.F. Xiao, B., Johnson, R.C., and Marko, J.F. (2010) Modulation of HU-DNA interactions by salt concentration and applied force. Nucleic Acids Res., 38, 6176-6185.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 6176-6185
-
-
Xiao, B.1
Johnson, R.C.2
Marko, J.F.3
Xiao, B.4
Johnson, R.C.5
Marko, J.F.6
-
40
-
-
84875439944
-
The nucleoid-associated protein Dan organizes chromosomal DNA through rigid nucleoprotein filament formation in E. Coli during anoxia
-
Lim, C.J., Lee, S.Y., Teramoto, J., Ishihama, A., and Yan, J. Lim, C.J., Lee, S.Y., Teramoto, J., Ishihama, A., and Yan, J. (2013) The nucleoid-associated protein Dan organizes chromosomal DNA through rigid nucleoprotein filament formation in E. Coli during anoxia. Nucleic Acids Res., 41, 746-753.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 746-753
-
-
Lim, C.J.1
Lee, S.Y.2
Teramoto, J.3
Ishihama, A.4
Yan, J.5
Lim, C.J.6
Lee, S.Y.7
Teramoto, J.8
Ishihama, A.9
Yan, J.10
-
41
-
-
33750940291
-
Compaction and supercoiling of single, long DNA molecules by HU protein
-
Schnurr, B., Vorgias, C., and Stavans, J. Schnurr, B., Vorgias, C., and Stavans, J. (2006) Compaction and supercoiling of single, long DNA molecules by HU protein. Biophys. Rev. Lett., 01, 29-44.
-
(2006)
Biophys. Rev. Lett.
, vol.1
, pp. 29-44
-
-
Schnurr, B.1
Vorgias, C.2
Stavans, J.3
Schnurr, B.4
Vorgias, C.5
Stavans, J.6
-
42
-
-
70349957921
-
Protein-mediated molecular bridging: A key mechanism in biopolymer organization
-
Wiggins, P.A., Dame, R.T., Noom, M.C., and Wuite, G.J.L. Wiggins, P.A., Dame, R.T., Noom, M.C., and Wuite, G.J.L. (2009) Protein-mediated molecular bridging: a key mechanism in biopolymer organization. Biophys. J., 97, 1997-2003.
-
(2009)
Biophys. J.
, vol.97
, pp. 1997-2003
-
-
Wiggins, P.A.1
Dame, R.T.2
Noom, M.C.3
Wuite, G.J.L.4
Wiggins, P.A.5
Dame, R.T.6
Noom, M.C.7
Wuite, G.J.L.8
-
43
-
-
84879421049
-
Transcription-coupled DNA supercoiling in defined protein systems and in E. Coli topA mutant strains
-
Fulcrand, G., Zhi, X., and Leng, F. Fulcrand, G., Zhi, X., and Leng, F. (2013) Transcription-coupled DNA supercoiling in defined protein systems and in E. Coli topA mutant strains. IUBMB Life, 65, 615-622.
-
(2013)
IUBMB Life
, vol.65
, pp. 615-622
-
-
Fulcrand, G.1
Zhi, X.2
Leng, F.3
Fulcrand, G.4
Zhi, X.5
Leng, F.6
-
44
-
-
84055179007
-
Dividing a supercoiled DNA molecule into two independent topological domains
-
Leng, F., Chen, B., and Dunlap, D.D. Leng, F., Chen, B., and Dunlap, D.D. (2011) Dividing a supercoiled DNA molecule into two independent topological domains. Proc. Natl. Acad. Sci. U.S.A., 108, 19973-19978.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 19973-19978
-
-
Leng, F.1
Chen, B.2
Dunlap, D.D.3
Leng, F.4
Chen, B.5
Dunlap, D.D.6
-
45
-
-
77954362019
-
DNA linking number change induced by sequence-specific DNA-binding proteins
-
Chen, B., Xiao, Y., Liu, C., Li, C., and Leng, F. Chen, B., Xiao, Y., Liu, C., Li, C., and Leng, F. (2010) DNA linking number change induced by sequence-specific DNA-binding proteins. Nucleic Acids Res., 38, 3643-3654.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3643-3654
-
-
Chen, B.1
Xiao, Y.2
Liu, C.3
Li, C.4
Leng, F.5
Chen, B.6
Xiao, Y.7
Liu, C.8
Li, C.9
Leng, F.10
-
46
-
-
25844463677
-
DNA looping-mediated repression by histone-like protein H-NS: Specific requirement of Esigma70 as a cofactor for looping
-
Shin, M., Song, M., Rhee, J.H., Hong, Y., Kim, Y.J., Seok, Y.J., Ha, K.S., Jung, S.H., and Choy, H.E. Shin, M., Song, M., Rhee, J.H., Hong, Y., Kim, Y.J., Seok, Y.J., Ha, K.S., Jung, S.H., and Choy, H.E. (2005) DNA looping-mediated repression by histone-like protein H-NS: specific requirement of Esigma70 as a cofactor for looping. Genes Dev., 19, 2388-2398.
-
(2005)
Genes Dev.
, vol.19
, pp. 2388-2398
-
-
Shin, M.1
Song, M.2
Rhee, J.H.3
Hong, Y.4
Kim, Y.J.5
Seok, Y.J.6
Ha, K.S.7
Jung, S.H.8
Choy, H.E.9
Shin, M.10
Song, M.11
Rhee, J.H.12
Hong, Y.13
Kim, Y.J.14
Seok, Y.J.15
Ha, K.S.16
Jung, S.H.17
Choy, H.E.18
-
47
-
-
0023433855
-
Supercoiling of the DNA template during transcription
-
Liu, L.F. andWang, J.C. Liu, L.F. andWang, J.C. (1987) Supercoiling of the DNA template during transcription. Proc. Natl. Acad. Sci. U.S.A., 84, 7024-7027.
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 7024-7027
-
-
Liu, L.F.1
Wang, J.C.2
Liu, L.F.3
Wang, J.C.4
-
48
-
-
84879682825
-
Transcription under torsion
-
Ma, J., Bai, L., and Wang, M.D. Ma, J., Bai, L., and Wang, M.D. (2013) Transcription under torsion. Science, 340, 1580-1583.
-
(2013)
Science
, vol.340
, pp. 1580-1583
-
-
Ma, J.1
Bai, L.2
Wang, M.D.3
Ma, J.4
Bai, L.5
Wang, M.D.6
-
49
-
-
2342454974
-
Dual architectural roles of HU: Formation of flexible hinges and rigid filaments
-
van Noort, J., Verbrugge, S., Goosen, N., Dekker, C., and Dame, R.T. van Noort, J., Verbrugge, S., Goosen, N., Dekker, C., and Dame, R.T. (2004) Dual architectural roles of HU: formation of flexible hinges and rigid filaments. Proc. Natl. Acad. Sci. U.S.A., 101, 6969-6974.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 6969-6974
-
-
Van Noort, J.1
Verbrugge, S.2
Goosen, N.3
Dekker, C.4
Dame, R.T.5
Van Noort, J.6
Verbrugge, S.7
Goosen, N.8
Dekker, C.9
Dame, R.T.10
-
50
-
-
84860359300
-
Gene silencing H-NS paralogue StpA forms a rigid protein filament along DNA that blocks DNA accessibility
-
Lim, C.J., Whang, Y.R., Kenney, L.J., and Yan, J. Lim, C.J., Whang, Y.R., Kenney, L.J., and Yan, J. (2012) Gene silencing H-NS paralogue StpA forms a rigid protein filament along DNA that blocks DNA accessibility. Nucleic Acids Res., 40, 3316-3328.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 3316-3328
-
-
Lim, C.J.1
Whang, Y.R.2
Kenney, L.J.3
Yan, J.4
Lim, C.J.5
Whang, Y.R.6
Kenney, L.J.7
Yan, J.8
-
51
-
-
84867500676
-
Higher order oligomerization is required for H-NS family member MvaT to form gene-silencing nucleoprotein filament
-
Winardhi, R.S., Fu, W., Castang, S., Li, Y., Dove, S.L., and Yan, J. Winardhi, R.S., Fu, W., Castang, S., Li, Y., Dove, S.L., and Yan, J. (2012) Higher order oligomerization is required for H-NS family member MvaT to form gene-silencing nucleoprotein filament. Nucleic Acids Res., 40, 8942-8952.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 8942-8952
-
-
Winardhi, R.S.1
Fu, W.2
Castang, S.3
Li, Y.4
Dove, S.L.5
Yan, J.6
Winardhi, R.S.7
Fu, W.8
Castang, S.9
Li, Y.10
Dove, S.L.11
Yan, J.12
-
52
-
-
42449140682
-
Lsr2 of Mycobacterium tuberculosis is a DNA-bridging protein
-
Chen, J.M., Ren, H., Shaw, J.E., Wang, Y.J., Li, M., Leung, A.S., Tran, V., Berbenetz, N.M., Kocincova, D., and Yip, C.M. et al. Chen, J.M., Ren, H., Shaw, J.E., Wang, Y.J., Li, M., Leung, A.S., Tran, V., Berbenetz, N.M., Kocincova, D., and Yip, C.M. (2008) Lsr2 of Mycobacterium tuberculosis is a DNA-bridging protein. Nucleic Acids Res., 36, 2123-2135.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2123-2135
-
-
Chen, J.M.1
Ren, H.2
Shaw, J.E.3
Wang, Y.J.4
Li, M.5
Leung, A.S.6
Tran, V.7
Berbenetz, N.M.8
Kocincova, D.9
Yip, C.M.10
Chen, J.M.11
Ren, H.12
Shaw, J.E.13
Wang, Y.J.14
Li, M.15
Leung, A.S.16
Tran, V.17
Berbenetz, N.M.18
Kocincova, D.19
Yip, C.M.20
more..
-
53
-
-
84878554539
-
Mechanism of DNA organization by Mycobacterium tuberculosis protein Lsr2
-
Qu, Y., Lim, C.J., Whang, Y.R., Liu, J., and Yan, J. Qu, Y., Lim, C.J., Whang, Y.R., Liu, J., and Yan, J. (2013) Mechanism of DNA organization by Mycobacterium tuberculosis protein Lsr2. Nucleic Acids Res., 41, 5263-5272.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 5263-5272
-
-
Qu, Y.1
Lim, C.J.2
Whang, Y.R.3
Liu, J.4
Yan, J.5
Qu, Y.6
Lim, C.J.7
Whang, Y.R.8
Liu, J.9
Yan, J.10
-
54
-
-
0035845534
-
Compaction of single DNA molecules induced by binding of integration host factor (IHF)
-
Ali, B.M.J., Amit, R., Braslavsky, I., Oppenheim, A.B., Gileadi, O., and Stavans, J. Ali, B.M.J., Amit, R., Braslavsky, I., Oppenheim, A.B., Gileadi, O., and Stavans, J. (2001) Compaction of single DNA molecules induced by binding of integration host factor (IHF). Proc. Natl. Acad. Sci. U.S.A., 98, 10658-10663.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 10658-10663
-
-
Ali, B.M.J.1
Amit, R.2
Braslavsky, I.3
Oppenheim, A.B.4
Gileadi, O.5
Stavans, J.6
Ali, B.M.J.7
Amit, R.8
Braslavsky, I.9
Oppenheim, A.B.10
Gileadi, O.11
Stavans, J.12
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