Cloning, purification and preliminary crystallographic analysis of Ara127N, a GH127 β-l-arabinofuranosidase from Geobacillus stearothermophilus T6

Acta Crystallographica Section F:Structural Biology Communications

Volumn 70, Issue 8, 2014, Pages 1038-1045

  Lansky, Shifra ^a   Salama, Rachel ^b   Dann, Roie ^a   Shner, Izhak ^b   Manjasetty, Babu A ^c,d   Belrhali, Hassan ^c,d   Shoham, Yuval ^b   Shoham, Gil ^a  

^a HEBREW UNIVERSITY OF JERUSALEM   (Israel)

^b TECHNION ISRAEL INSTITUTE OF TECHNOLOGY   (Israel)

^c EUROPEAN MOLECULAR BIOLOGY LABORATORY   (France)

^d UNIV GRENOBLE ALPES   (France)

Author keywords

arabinan utilization; arabinofuranoside; arabinose; Geobacillus stearothermophilus; glycoside hydrolase; MAD; SAD; selenomethionine; arabinofuranosidase, GH127

Indexed keywords

ALPHA-N-ARABINOFURANOSIDASE; GLYCOSIDASE; PRIMER DNA;

CHEMISTRY; ENZYMOLOGY; GENETICS; GEOBACILLUS STEAROTHERMOPHILUS; ISOLATION AND PURIFICATION; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PROCEDURES; X RAY CRYSTALLOGRAPHY;

BASE SEQUENCE; CLONING, MOLECULAR; CRYSTALLOGRAPHY, X-RAY; DNA PRIMERS; GEOBACILLUS STEAROTHERMOPHILUS; GLYCOSIDE HYDROLASES; POLYMERASE CHAIN REACTION;

EID: 84905496852     PISSN: None     EISSN: 2053230X     Source Type: Journal    
DOI: 10.1107/S2053230X14012680     Document Type: Article

References (54)

1. Alalouf, O., Balazs, Y., Volkinshtein, M., Grimpel, Y., Shoham, G. & Shoham, Y. (2011). J. Biol. Chem. 286, 41993-42001.
2. Almog, O., Greenblatt, H. M., Spungin, A., Ben-Meir, D., Blumberg, S. & Shoham, G. (1993). J. Mol. Biol. 230, 342-344.
3. Almog, O., Klein, D., Braun, S. & Shoham, G. (1994). J. Mol. Biol. 235, 760-762.
4. Bar, M., Golan, G., Nechama, M., Zolotnitsky, G., Shoham, Y. & Shoham, G. (2004). Acta Cryst. D60, 545-549.
5. Battye, T. G. G., Kontogiannis, L., Johnson, O., Powell, H. R. & Leslie, A. G.W. (2011). Acta Cryst. D67, 271-281.
6. Ben-David, A., Bravman, T., Balazs, Y. S., Czjzek, M., Schomburg, D., Shoham, G. & Shoham, Y. (2007). Chembiochem, 8, 2145-2151.
7. Ben-David, A., Shoham, G. & Shoham, Y. (2008). Chem. Biol. 15, 546-551.
8. Bravman, T., Mechaly, A., Shulami, S., Belakhov, V., Baasov, T., Shoham, G. & Shoham, Y. (2001). FEBS Lett. 495, 115-119.
9. Bravman, T., Zolotnitsky, G., Belakhov, V., Shoham, G., Henrissat, B., Baasov, T. & Shoham, Y. (2003). Biochemistry, 42, 10528-10536.
10. Brüx, C., Ben-David, A., Shallom-Shezifi, D., Leon, M., Niefind, K., Shoham, G., Shoham, Y. & Schomburg, D. (2006). J. Mol. Biol. 359, 97-109.
11. Fujita, K., Takashi, Y., Obuchi, E., Kitahara, K. & Suganuma, T. (2014). J. Biol. Chem. 289, 5240-5249.
12. Gat, O., Lapidot, A., Alchanati, I., Regueros, C. & Shoham, Y. (1994). Appl. Environ. Microbiol. 60, 1889-1896.
13. Gilbert, H. J. (2010). Plant Physiol. 153, 444-455.
14. Gilboa, R., Bauer, A. J. & Shoham, G. (1998). Acta Cryst. D54, 1467-1470.
15. Gilead, S. & Shoham, Y. (1995). Appl. Environ. Microbiol. 61, 170-174.
16. Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y. & Shoham, G. (2004). J. Biol. Chem. 279, 3014-3024.
17. Golan, G., Zharkov, D. O., Fernandes, A. S., Zaika, E., Kycia, J. H., Wawrzak, Z., Grollman, A. P. & Shoham, G. (2004). Acta Cryst. D60, 1476-1480.
18. Henrissat, B. & Davies, G. (1997). Curr. Opin. Struct. Biol. 7, 637-644.
19. Hövel, K., Shallom, D., Niefind, K., Baasov, T., Shoham, G., Shoham, Y. & Schomburg, D. (2003). Acta Cryst. D59, 913-915.
20. Hövel, K., Shallom, D., Niefind, K., Belakhov, V., Shoham, G., Baasov, T., Shoham, Y. & Schomburg, D. (2003). EMBO J. 22, 4922-4932.
21. Ito, T., Saikawa, K., Kim, S., Fujita, K., Ishiwata, A., Kaeothip, S., Arakawa, T., Wakagi, T., Beckham, G. T., Ito, Y. & Fushinobu, S. (2014). Biochem. Biophys. Res. Commun. 447, 32-37.
22. Jancarik, J. & Kim, S.-H. (1991). J. Appl. Cryst. 24, 409-411.
23. Kantardjieff, K. A. & Rupp, B. (2003). Protein Sci. 12, 1865-1871.
24. Lamport, D. T., Kieliszewski, M. J., Chen, Y. & Cannon, M. C. (2011). Plant Physiol. 156, 11-19.
25. Lansky, S., Alalouf, O., Salama, R., Dvir, H., Shoham, Y. & Shoham, G. (2014). Acta Cryst. F70, 476-481.
26. Lansky, S., Alalouf, O., Solomon, V., Alhassid, A., Govada, L., Chayan, N. E., Belrhali, H., Shoham, Y. & Shoham, G. (2013). Acta Cryst. F69, 430-434.
27. Lansky, S., Alalouf, O., Solomon, H. V., Alhassid, A., Govada, L., Chayen, N. E., Belrhali, H., Shoham, Y. & Shoham, G. (2014). Acta Cryst. D70, 261-278.
28. Lansky, S., Salama, R., Solomon, V. H., Belrhali, H., Shoham, Y. & Shoham, G. (2013). Acta Cryst. F69, 695-699.
29. Lansky, S., Zehavi, A., Dann, R., Dvir, H., Belrhali, H., Shoham, Y. & Shoham, G. (2014). Acta Cryst. F70, 225-231.
30. Matthews, B. W. (1968). J. Mol. Biol. 33, 491-497.
31. Mechaly, A., Teplitsky, A., Belakhov, V., Baasov, T., Shoham, G. & Shoham, Y. (2000). J. Biotechnol. 78, 83-86.
32. Mohnen, D. (2008). Curr. Opin. Plant Biol. 11, 266-277.
33. Ogawa-Ohnishi, M., Matsushita, W. & Matsubayashi, Y. (2013). Nature Chem. Biol. 9, 726-730.
34. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
35. Rees, D. C., Johnson, E. & Lewinson, O. (2009). Nature Rev. Mol. Cell Biol. 10, 218-227.
36. Reiland, V., Fundoiano-Hershcovitz, Y., Golan, G., Gilboa, R., Shoham, Y. & Shoham, G. (2004). Acta Cryst. D60, 2371-2376.
37. Scheller, H. V. & Ulvskov, P. (2010). Annu. Rev. Plant Biol. 61, 263-289.
38. Shallom, D., Belakhov, V., Solomon, D., Gilead-Gropper, S., Baasov, T., Shoham, G. & Shoham, Y. (2002). FEBS Lett. 514, 163-167.
39. Shallom, D., Belakhov, V., Solomon, D., Shoham, G., Baasov, T. & Shoham, Y. (2002). J. Biol. Chem. 277, 43667-43673.
40. Shallom, D., Golan, G., Shoham, G. & Shoham, Y. (2004). J. Bacteriol. 186, 6928-6937.
41. Shallom, D., Leon, M., Bravman, T., Ben-David, A., Zaide, G., Belakhov, V., Shoham, G., Schomburg, D., Baasov, T. & Shoham, Y. (2005). Biochemistry, 44, 387-397.
42. Shulami, S., Gat, O., Sonenshein, A. L. & Shoham, Y. (1999). J. Bacteriol. 181, 3695-3704.
43. Shulami, S., Raz-Pasteur, A., Tabachnikov, O., Gilead-Gropper, S., Shner, I. & Shoham, Y. (2011). J. Bacteriol. 193, 2838-2850.
44. Shulami, S., Zaide, G., Zolotnitsky, G., Langut, Y., Feld, G., Sonenshein, A. L. & Shoham, Y. (2007). Appl. Environ. Microbiol. 73, 874-884.
45. Solomon, H. V., Tabachnikov, O., Feinberg, H., Govada, L., Chayen, N. E., Shoham, Y. & Shoham, G. (2013). Acta Cryst. F69, 1114-1119.
46. Solomon, V., Teplitsky, A., Shulami, S., Zolotnitsky, G., Shoham, Y. & Shoham, G. (2007). Acta Cryst. D63, 845-859.
47. Tabachnikov, O. & Shoham, Y. (2013). FEBS J. 280, 950-964.
48. Teplitsky, A., Feinberg, H., Gilboa, R., Lapidot, A., Mechaly, A., Stojanoff, V., Capel, M., Shoham, Y. & Shoham, G. (1997). Acta Cryst. D53, 608-611.
49. Teplitsky, A., Mechaly, A., Stojanoff, V., Sainz, G., Golan, G., Feinberg, H., Gilboa, R., Reiland, V., Zolotnitsky, G., Shallom, D., Thompson, A., Shoham, Y. & Shoham, G. (2004). Acta Cryst. D60, 836-848.
50. Teplitsky, A., Shulami, S., Moryles, S., Shoham, Y. & Shoham, G. (2000). Acta Cryst. D56, 181-184.
51. Teplitsky, A., Shulami, S., Moryles, S., Zaide, G., Shoham, Y. & Shoham, G. (1999). Acta Cryst. D55, 869-872.
52. Warnecke, F. et al. (2007). Nature (London), 450, 560-565.
53. Winn, M. D. et al. (2011). Acta Cryst. D67, 235-242.
54. Zaide, G., Shallom, D., Shulami, S., Zolotnitsky, G., Golan, G., Baasov, T., Shoham, G. & Shoham, Y. (2001). Eur. J. Biochem. 268, 3006-3016.