-
1
-
-
69549135202
-
To localize or not to localize: MRNA fate is in 3′ UTR ends
-
C. Andreassi, and A. Riccio To localize or not to localize: mRNA fate is in 3′ UTR ends Trends Cell Biol. 19 2009 465 474
-
(2009)
Trends Cell Biol.
, vol.19
, pp. 465-474
-
-
Andreassi, C.1
Riccio, A.2
-
2
-
-
79958090979
-
DREME: Motif discovery in transcription factor ChIP-seq data
-
T.L. Bailey DREME: motif discovery in transcription factor ChIP-seq data Bioinformatics 27 2011 1653 1659
-
(2011)
Bioinformatics
, vol.27
, pp. 1653-1659
-
-
Bailey, T.L.1
-
3
-
-
84866937220
-
Inferring direct DNA binding from ChIP-seq
-
T.L. Bailey, and P. Machanick Inferring direct DNA binding from ChIP-seq Nucleic Acids Res. 40 2012 e128
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 128
-
-
Bailey, T.L.1
Machanick, P.2
-
4
-
-
84875200257
-
Long noncoding RNAs: Cellular address codes in development and disease
-
J. Pedro Batista, and Y. Howard Chang Long noncoding RNAs: cellular address codes in development and disease Cell 152 2013 1298 1307
-
(2013)
Cell
, vol.152
, pp. 1298-1307
-
-
Batista, J.P.1
Chang, Y.H.2
-
5
-
-
84879172698
-
Analysis of long non-coding RNA expression profiles in gastric cancer
-
W.-J. Cao, H.-L. Wu, B.-S. He, Y.-S. Zhang, and Z.-Y. Zhang Analysis of long non-coding RNA expression profiles in gastric cancer World J. Gastroenterol. 19 2013 3658 3664
-
(2013)
World J. Gastroenterol.
, vol.19
, pp. 3658-3664
-
-
Cao, W.-J.1
Wu, H.-L.2
He, B.-S.3
Zhang, Y.-S.4
Zhang, Z.-Y.5
-
6
-
-
80052979140
-
Mechanisms and consequences of alternative polyadenylation
-
D.C. Di Giammartino, K. Nishida, and J.L. Manley Mechanisms and consequences of alternative polyadenylation Mol. Cell 43 2011 853 866
-
(2011)
Mol. Cell
, vol.43
, pp. 853-866
-
-
Di Giammartino, D.C.1
Nishida, K.2
Manley, J.L.3
-
7
-
-
84882450872
-
Non-coding RNA: Structure and function for lncRNAs
-
L. Flintoft Non-coding RNA: structure and function for lncRNAs Nat. Rev. Genet. 14 2013 598
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 598
-
-
Flintoft, L.1
-
8
-
-
79953888460
-
The functional role of long non-coding RNA in human carcinomas
-
E.A. Gibb, C.J. Brown, and W.L. Lam The functional role of long non-coding RNA in human carcinomas Mol. Cancer 10 2011 38 55
-
(2011)
Mol. Cancer
, vol.10
, pp. 38-55
-
-
Gibb, E.A.1
Brown, C.J.2
Lam, W.L.3
-
9
-
-
84879921675
-
Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation
-
D. Hafez, T. Ni, S. Mukherjee, J. Zhu, and U. Ohler Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation Bioinformatics 29 2013 i108 i116
-
(2013)
Bioinformatics
, vol.29
-
-
Hafez, D.1
Ni, T.2
Mukherjee, S.3
Zhu, J.4
Ohler, U.5
-
10
-
-
79952284127
-
Hallmarks of cancer: The next generation
-
D. Hanahan, and R.A. Weinberg Hallmarks of cancer: the next generation Cell 144 2011 646 674
-
(2011)
Cell
, vol.144
, pp. 646-674
-
-
Hanahan, D.1
Weinberg, R.A.2
-
11
-
-
84873405541
-
Analysis of alternative cleavage and polyadenylation by 3′ region extraction and deep sequencing
-
M. Hoque, Z. Ji, D. Zheng, W. Luo, W. Li, B. You, J.Y. Park, G. Yehia, and B. Tian Analysis of alternative cleavage and polyadenylation by 3′ region extraction and deep sequencing Nat. Methods 10 2013 133 139
-
(2013)
Nat. Methods
, vol.10
, pp. 133-139
-
-
Hoque, M.1
Ji, Z.2
Zheng, D.3
Luo, W.4
Li, W.5
You, B.6
Park, J.Y.7
Yehia, G.8
Tian, B.9
-
12
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
M. Krzywinski, J. Schein, I. Birol, J. Connors, R. Gascoyne, D. Horsman, S.J. Jones, and M.A. Marra Circos: an information aesthetic for comparative genomics Genome Res. 19 2009 1639 1645
-
(2009)
Genome Res.
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
Jones, S.J.7
Marra, M.A.8
-
13
-
-
84866910243
-
An in-depth map of polyadenylation sites in cancer
-
Y. Lin, Z. Li, F. Ozsolak, S.W. Kim, G. Arango-Argoty, T.T. Liu, S.A. Tenenbaum, T. Bailey, A.P. Monaghan, P.M. Milos, and B. John An in-depth map of polyadenylation sites in cancer Nucleic Acids Res. 40 2012 8460 8471
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 8460-8471
-
-
Lin, Y.1
Li, Z.2
Ozsolak, F.3
Kim, S.W.4
Arango-Argoty, G.5
Liu, T.T.6
Tenenbaum, S.A.7
Bailey, T.8
Monaghan, A.P.9
Milos, P.M.10
John, B.11
-
14
-
-
84857772692
-
Alternative mRNA polyadenylation in eukaryotes: An effective regulator of gene expression
-
C.S. Lutz, and A. Moreira Alternative mRNA polyadenylation in eukaryotes: an effective regulator of gene expression Wiley Interdiscip. Rev. RNA 2 2011 23 31
-
(2011)
Wiley Interdiscip. Rev. RNA
, vol.2
, pp. 23-31
-
-
Lutz, C.S.1
Moreira, A.2
-
15
-
-
84863093884
-
Genome-wide analysis of pre-mRNA 3′ end processing reveals a decisive role of human cleavage factor i in the regulation of 3′ UTR length
-
G. Martin, A.R. Gruber, W. Keller, and M. Zavolan Genome-wide analysis of pre-mRNA 3′ end processing reveals a decisive role of human cleavage factor I in the regulation of 3′ UTR length Cell Rep. 1 2012 753 763
-
(2012)
Cell Rep.
, vol.1
, pp. 753-763
-
-
Martin, G.1
Gruber, A.R.2
Keller, W.3
Zavolan, M.4
-
16
-
-
84875404794
-
The UCSC genome browser database: Extensions and updates 2013
-
L.R. Meyer, A.S. Zweig, A.S. Hinrichs, D. Karolchik, R.M. Kuhn, M. Wong, C.A. Sloan, K.R. Rosenbloom, G. Roe, and B. Rhead The UCSC genome browser database: extensions and updates 2013 Nucleic Acids Res. 41 2013 D64 D69
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Meyer, L.R.1
Zweig, A.S.2
Hinrichs, A.S.3
Karolchik, D.4
Kuhn, R.M.5
Wong, M.6
Sloan, C.A.7
Rosenbloom, K.R.8
Roe, G.9
Rhead, B.10
-
17
-
-
77953284100
-
Molecular mechanisms of eukaryotic pre-mRNA 3′ end processing regulation
-
S. Millevoi, and S. Vagner Molecular mechanisms of eukaryotic pre-mRNA 3′ end processing regulation Nucleic Acids Res. 38 2010 2757 2774
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2757-2774
-
-
Millevoi, S.1
Vagner, S.2
-
18
-
-
78649910014
-
Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation
-
F. Ozsolak, P. Kapranov, S. Foissac, S.W. Kim, E. Fishilevich, A.P. Monaghan, B. John, and P.M. Milos Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation Cell 143 2010 1018 1029
-
(2010)
Cell
, vol.143
, pp. 1018-1029
-
-
Ozsolak, F.1
Kapranov, P.2
Foissac, S.3
Kim, S.W.4
Fishilevich, E.5
Monaghan, A.P.6
John, B.7
Milos, P.M.8
-
19
-
-
82155186923
-
The emergence of lncRNAs in cancer biology
-
J.R. Prensner, and A.M. Chinnaiyan The emergence of lncRNAs in cancer biology Cancer Discovery 1 2011 391 407
-
(2011)
Cancer Discovery
, vol.1
, pp. 391-407
-
-
Prensner, J.R.1
Chinnaiyan, A.M.2
-
20
-
-
84873351133
-
The long non-coding RNAs, a new cancer diagnostic and therapeutic gold mine
-
P. Qi, and X. Du The long non-coding RNAs, a new cancer diagnostic and therapeutic gold mine Mod. Pathol. 26 2012 155 165
-
(2012)
Mod. Pathol.
, vol.26
, pp. 155-165
-
-
Qi, P.1
Du, X.2
-
21
-
-
84869765539
-
Alternative polyadenylation: New insights from global analyses
-
Y. Shi Alternative polyadenylation: new insights from global analyses RNA - Publ. RNA Soc. 18 2012 2105 2117
-
(2012)
RNA - Publ. RNA Soc.
, vol.18
, pp. 2105-2117
-
-
Shi, Y.1
-
22
-
-
77954666305
-
The SHOGUN machine learning toolbox
-
S. Sonnenburg, G. Rätsch, S. Henschel, C. Widmer, J. Behr, A. Zien, F.D. Bona, A. Binder, C. Gehl, and V. Franc The SHOGUN machine learning toolbox J. Mach. Learn. Res. 99 2010 1799 1802
-
(2010)
J. Mach. Learn. Res.
, vol.99
, pp. 1799-1802
-
-
Sonnenburg, S.1
Rätsch, G.2
Henschel, S.3
Widmer, C.4
Behr, J.5
Zien, A.6
Bona, F.D.7
Binder, A.8
Gehl, C.9
Franc, V.10
-
23
-
-
84862526272
-
Signals for pre-mRNA cleavage and polyadenylation
-
B. Tian, and J.H. Graber Signals for pre-mRNA cleavage and polyadenylation Wiley Interdiscip. Rev. RNA 3 2012 385 396
-
(2012)
Wiley Interdiscip. Rev. RNA
, vol.3
, pp. 385-396
-
-
Tian, B.1
Graber, J.H.2
-
24
-
-
84878151459
-
Alternative cleavage and polyadenylation: The long and short of it
-
B. Tian, and J.L. Manley Alternative cleavage and polyadenylation: the long and short of it Trends Biochem. Sci. 38 2013 312 320
-
(2013)
Trends Biochem. Sci.
, vol.38
, pp. 312-320
-
-
Tian, B.1
Manley, J.L.2
-
25
-
-
84879987789
-
LincRNAs: Genomics, evolution, and mechanisms
-
I. Ulitsky, and D.P. Bartel lincRNAs: genomics, evolution, and mechanisms Cell 154 2013 26 46
-
(2013)
Cell
, vol.154
, pp. 26-46
-
-
Ulitsky, I.1
Bartel, D.P.2
-
26
-
-
80053045739
-
Molecular mechanisms of long noncoding RNAs
-
K.C. Wang, and H.Y. Chang Molecular mechanisms of long noncoding RNAs Mol. Cell 43 2011 904 914
-
(2011)
Mol. Cell
, vol.43
, pp. 904-914
-
-
Wang, K.C.1
Chang, H.Y.2
-
27
-
-
84878800387
-
Genome-wide identification of cancer-related polyadenylated and non-polyadenylated RNAs in human breast and lung cell lines
-
G. Zhao, F. Jiao, Q. Liao, H. Luo, H. Li, L. Sun, D. Bu, K. Yu, Y. Zhao, and R. Chen Genome-wide identification of cancer-related polyadenylated and non-polyadenylated RNAs in human breast and lung cell lines Sci. Chin. Life Sci. 56 2013 503 512
-
(2013)
Sci. Chin. Life Sci.
, vol.56
, pp. 503-512
-
-
Zhao, G.1
Jiao, F.2
Liao, Q.3
Luo, H.4
Li, H.5
Sun, L.6
Bu, D.7
Yu, K.8
Zhao, Y.9
Chen, R.10
-
28
-
-
0033059981
-
Formation of mRNA 3' ends in eukaryotes: Mechanism, regulation, and interrelationships with other steps in mRNA synthesis
-
J. Zhao, L. Hyman, and C. Moore Formation of mRNA 3′ ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis Microbiol. Mol. Biol. Rev. 63 1999 405 445 (Pubitemid 29264977)
-
(1999)
Microbiology and Molecular Biology Reviews
, vol.63
, Issue.2
, pp. 405-445
-
-
Zhao, J.1
Hyman, L.2
Moore, C.3
|