메뉴 건너뛰기




Volumn 52, Issue , 2014, Pages 1-8

Genome-wide identification and predictive modeling of lincRNAs polyadenylation in cancer genome

Author keywords

Long intervening noncoding RNA; Polyadenylation sites; Support vector machine

Indexed keywords

DISEASES; HISTOLOGY; PREDICTIVE ANALYTICS; RNA; SUPPORT VECTOR MACHINES; TUMORS;

EID: 84905496222     PISSN: 14769271     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compbiolchem.2014.07.001     Document Type: Article
Times cited : (7)

References (28)
  • 1
    • 69549135202 scopus 로고    scopus 로고
    • To localize or not to localize: MRNA fate is in 3′ UTR ends
    • C. Andreassi, and A. Riccio To localize or not to localize: mRNA fate is in 3′ UTR ends Trends Cell Biol. 19 2009 465 474
    • (2009) Trends Cell Biol. , vol.19 , pp. 465-474
    • Andreassi, C.1    Riccio, A.2
  • 2
    • 79958090979 scopus 로고    scopus 로고
    • DREME: Motif discovery in transcription factor ChIP-seq data
    • T.L. Bailey DREME: motif discovery in transcription factor ChIP-seq data Bioinformatics 27 2011 1653 1659
    • (2011) Bioinformatics , vol.27 , pp. 1653-1659
    • Bailey, T.L.1
  • 3
    • 84866937220 scopus 로고    scopus 로고
    • Inferring direct DNA binding from ChIP-seq
    • T.L. Bailey, and P. Machanick Inferring direct DNA binding from ChIP-seq Nucleic Acids Res. 40 2012 e128
    • (2012) Nucleic Acids Res. , vol.40 , pp. 128
    • Bailey, T.L.1    Machanick, P.2
  • 4
    • 84875200257 scopus 로고    scopus 로고
    • Long noncoding RNAs: Cellular address codes in development and disease
    • J. Pedro Batista, and Y. Howard Chang Long noncoding RNAs: cellular address codes in development and disease Cell 152 2013 1298 1307
    • (2013) Cell , vol.152 , pp. 1298-1307
    • Batista, J.P.1    Chang, Y.H.2
  • 6
    • 80052979140 scopus 로고    scopus 로고
    • Mechanisms and consequences of alternative polyadenylation
    • D.C. Di Giammartino, K. Nishida, and J.L. Manley Mechanisms and consequences of alternative polyadenylation Mol. Cell 43 2011 853 866
    • (2011) Mol. Cell , vol.43 , pp. 853-866
    • Di Giammartino, D.C.1    Nishida, K.2    Manley, J.L.3
  • 7
    • 84882450872 scopus 로고    scopus 로고
    • Non-coding RNA: Structure and function for lncRNAs
    • L. Flintoft Non-coding RNA: structure and function for lncRNAs Nat. Rev. Genet. 14 2013 598
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 598
    • Flintoft, L.1
  • 8
    • 79953888460 scopus 로고    scopus 로고
    • The functional role of long non-coding RNA in human carcinomas
    • E.A. Gibb, C.J. Brown, and W.L. Lam The functional role of long non-coding RNA in human carcinomas Mol. Cancer 10 2011 38 55
    • (2011) Mol. Cancer , vol.10 , pp. 38-55
    • Gibb, E.A.1    Brown, C.J.2    Lam, W.L.3
  • 9
    • 84879921675 scopus 로고    scopus 로고
    • Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation
    • D. Hafez, T. Ni, S. Mukherjee, J. Zhu, and U. Ohler Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation Bioinformatics 29 2013 i108 i116
    • (2013) Bioinformatics , vol.29
    • Hafez, D.1    Ni, T.2    Mukherjee, S.3    Zhu, J.4    Ohler, U.5
  • 10
    • 79952284127 scopus 로고    scopus 로고
    • Hallmarks of cancer: The next generation
    • D. Hanahan, and R.A. Weinberg Hallmarks of cancer: the next generation Cell 144 2011 646 674
    • (2011) Cell , vol.144 , pp. 646-674
    • Hanahan, D.1    Weinberg, R.A.2
  • 11
    • 84873405541 scopus 로고    scopus 로고
    • Analysis of alternative cleavage and polyadenylation by 3′ region extraction and deep sequencing
    • M. Hoque, Z. Ji, D. Zheng, W. Luo, W. Li, B. You, J.Y. Park, G. Yehia, and B. Tian Analysis of alternative cleavage and polyadenylation by 3′ region extraction and deep sequencing Nat. Methods 10 2013 133 139
    • (2013) Nat. Methods , vol.10 , pp. 133-139
    • Hoque, M.1    Ji, Z.2    Zheng, D.3    Luo, W.4    Li, W.5    You, B.6    Park, J.Y.7    Yehia, G.8    Tian, B.9
  • 14
    • 84857772692 scopus 로고    scopus 로고
    • Alternative mRNA polyadenylation in eukaryotes: An effective regulator of gene expression
    • C.S. Lutz, and A. Moreira Alternative mRNA polyadenylation in eukaryotes: an effective regulator of gene expression Wiley Interdiscip. Rev. RNA 2 2011 23 31
    • (2011) Wiley Interdiscip. Rev. RNA , vol.2 , pp. 23-31
    • Lutz, C.S.1    Moreira, A.2
  • 15
    • 84863093884 scopus 로고    scopus 로고
    • Genome-wide analysis of pre-mRNA 3′ end processing reveals a decisive role of human cleavage factor i in the regulation of 3′ UTR length
    • G. Martin, A.R. Gruber, W. Keller, and M. Zavolan Genome-wide analysis of pre-mRNA 3′ end processing reveals a decisive role of human cleavage factor I in the regulation of 3′ UTR length Cell Rep. 1 2012 753 763
    • (2012) Cell Rep. , vol.1 , pp. 753-763
    • Martin, G.1    Gruber, A.R.2    Keller, W.3    Zavolan, M.4
  • 17
    • 77953284100 scopus 로고    scopus 로고
    • Molecular mechanisms of eukaryotic pre-mRNA 3′ end processing regulation
    • S. Millevoi, and S. Vagner Molecular mechanisms of eukaryotic pre-mRNA 3′ end processing regulation Nucleic Acids Res. 38 2010 2757 2774
    • (2010) Nucleic Acids Res. , vol.38 , pp. 2757-2774
    • Millevoi, S.1    Vagner, S.2
  • 18
    • 78649910014 scopus 로고    scopus 로고
    • Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation
    • F. Ozsolak, P. Kapranov, S. Foissac, S.W. Kim, E. Fishilevich, A.P. Monaghan, B. John, and P.M. Milos Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation Cell 143 2010 1018 1029
    • (2010) Cell , vol.143 , pp. 1018-1029
    • Ozsolak, F.1    Kapranov, P.2    Foissac, S.3    Kim, S.W.4    Fishilevich, E.5    Monaghan, A.P.6    John, B.7    Milos, P.M.8
  • 19
    • 82155186923 scopus 로고    scopus 로고
    • The emergence of lncRNAs in cancer biology
    • J.R. Prensner, and A.M. Chinnaiyan The emergence of lncRNAs in cancer biology Cancer Discovery 1 2011 391 407
    • (2011) Cancer Discovery , vol.1 , pp. 391-407
    • Prensner, J.R.1    Chinnaiyan, A.M.2
  • 20
    • 84873351133 scopus 로고    scopus 로고
    • The long non-coding RNAs, a new cancer diagnostic and therapeutic gold mine
    • P. Qi, and X. Du The long non-coding RNAs, a new cancer diagnostic and therapeutic gold mine Mod. Pathol. 26 2012 155 165
    • (2012) Mod. Pathol. , vol.26 , pp. 155-165
    • Qi, P.1    Du, X.2
  • 21
    • 84869765539 scopus 로고    scopus 로고
    • Alternative polyadenylation: New insights from global analyses
    • Y. Shi Alternative polyadenylation: new insights from global analyses RNA - Publ. RNA Soc. 18 2012 2105 2117
    • (2012) RNA - Publ. RNA Soc. , vol.18 , pp. 2105-2117
    • Shi, Y.1
  • 23
    • 84862526272 scopus 로고    scopus 로고
    • Signals for pre-mRNA cleavage and polyadenylation
    • B. Tian, and J.H. Graber Signals for pre-mRNA cleavage and polyadenylation Wiley Interdiscip. Rev. RNA 3 2012 385 396
    • (2012) Wiley Interdiscip. Rev. RNA , vol.3 , pp. 385-396
    • Tian, B.1    Graber, J.H.2
  • 24
    • 84878151459 scopus 로고    scopus 로고
    • Alternative cleavage and polyadenylation: The long and short of it
    • B. Tian, and J.L. Manley Alternative cleavage and polyadenylation: the long and short of it Trends Biochem. Sci. 38 2013 312 320
    • (2013) Trends Biochem. Sci. , vol.38 , pp. 312-320
    • Tian, B.1    Manley, J.L.2
  • 25
    • 84879987789 scopus 로고    scopus 로고
    • LincRNAs: Genomics, evolution, and mechanisms
    • I. Ulitsky, and D.P. Bartel lincRNAs: genomics, evolution, and mechanisms Cell 154 2013 26 46
    • (2013) Cell , vol.154 , pp. 26-46
    • Ulitsky, I.1    Bartel, D.P.2
  • 26
    • 80053045739 scopus 로고    scopus 로고
    • Molecular mechanisms of long noncoding RNAs
    • K.C. Wang, and H.Y. Chang Molecular mechanisms of long noncoding RNAs Mol. Cell 43 2011 904 914
    • (2011) Mol. Cell , vol.43 , pp. 904-914
    • Wang, K.C.1    Chang, H.Y.2
  • 27
    • 84878800387 scopus 로고    scopus 로고
    • Genome-wide identification of cancer-related polyadenylated and non-polyadenylated RNAs in human breast and lung cell lines
    • G. Zhao, F. Jiao, Q. Liao, H. Luo, H. Li, L. Sun, D. Bu, K. Yu, Y. Zhao, and R. Chen Genome-wide identification of cancer-related polyadenylated and non-polyadenylated RNAs in human breast and lung cell lines Sci. Chin. Life Sci. 56 2013 503 512
    • (2013) Sci. Chin. Life Sci. , vol.56 , pp. 503-512
    • Zhao, G.1    Jiao, F.2    Liao, Q.3    Luo, H.4    Li, H.5    Sun, L.6    Bu, D.7    Yu, K.8    Zhao, Y.9    Chen, R.10
  • 28
    • 0033059981 scopus 로고    scopus 로고
    • Formation of mRNA 3' ends in eukaryotes: Mechanism, regulation, and interrelationships with other steps in mRNA synthesis
    • J. Zhao, L. Hyman, and C. Moore Formation of mRNA 3′ ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis Microbiol. Mol. Biol. Rev. 63 1999 405 445 (Pubitemid 29264977)
    • (1999) Microbiology and Molecular Biology Reviews , vol.63 , Issue.2 , pp. 405-445
    • Zhao, J.1    Hyman, L.2    Moore, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.