Direct analysis of volatile fatty acids in marine sediment porewater by two-dimensional ion chromatography-mass spectrometry

Limnology and Oceanography: Methods

Volumn 12, Issue JUL, 2014, Pages 455-468

  Glombitza, Clemens ^a   Pedersen, Jeanette ^a   Røy, Hans ^a   Jørgensen, Bo Barker ^a  

^a AARHUS UNIVERSITY   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84905443882     PISSN: None     EISSN: 15415856     Source Type: Journal    
DOI: 10.4319/lom.2014.12.455     Document Type: Article

References (44)

1. Ábalos, M., J. M. Bayona, and J. Pawliszyn. 2000. Development of a headspace solid-phase microextraction procedure for the determination of free volatile fatty acids in waste waters. J. Chromatogr. A 873:107-115.
2. Albert, D. B., and C. S. Martens. 1997. Determination of lowmolecular- weight organic acid concentrations in seawater and pore-water samples via HPLC. Mar. Chem. 56:27-37.
3. Armbruster, D. A., and T. Pry. 2008. Limit of blank, limit of detection and limit of quantitation. Clin. Biochem. Rev. 29:S49.
4. Arndt, S., B. B. Jørgensen, D. LaRowe, J. Middelburg, R. Pancost, and P. Regnier. 2013. Quantifying the degradation of organic matter in marine sediments: A review and synthesis. Earth-Sci. Rev. 123:53-86.
5. Barcelona, M. J. 1980. Dissolved organic carbon and volatile fatty acids in marine sediment pore waters. Geochim. Cosmochim. Acta 44:1977-1984.
6. Barcelona, M. J, H. M. Liljestrand, and J. J. Morgan. 1980. Determination of low molecular weight volatile fatty acids in aqueus samples. Anal. Chem. 52:321-325.
7. Christensen, D., and T. Blackburn. 1982. Turnover of 14 Clabelled acetate in marine sediments. Mar. Biol. 71:113-119.
8. Dickens, G. R., M. Koelling, D. C. Smith, and L. Schnieders. 2007. Rhizon sampling of pore waters on scientific drilling expeditions: an example from the IODP Expedition 302, Arctic Coring Expedition (ACEX). Sci. Drill. 4:22-25.
9. Ferreira, F. N., and others. 2012. Matrix-elimination with steam distillation for determination of short-chain fatty acids in hypersaline waters from pre-salt layer by ion-exclusion chromatography. J. of Chromatogr. A 1223:79-83.
10. Finke, N., V. Vandieken, and B. B. Jørgensen. 2007. Acetate, lactate, propionate, and isobutyrate as electron donors for iron and sulfate reduction in Arctic marine sediments, Svalbard. FEMS Microbiol. Ecol. 59:10-22.
11. Foley, J. P., and J. G. Dorsey. 1984. Clarification of the limit of detection in chromatography. Chromatographia 18:503- 511.
12. Gribsholt, B., and E. Kristensen. 2002. Impact of sampling methods on sulfate reduction rates and dissolved organic carbon (DOC) concentrations in vegetated salt marsh sediments. Wetlands Ecol. Manage. 10:371-379.
13. Hädrich, A., V. B. Heuer, M. Herrmann, K. U. Hinrichs, and K. Küsel. 2012. Origin and fate of acetate in an acidic fen. FEMS Microbiol. Ecol. 81:339-354.
14. Heuer, V., and others. 2006. Online d13C analysis of volatile fatty acids in sediment/porewater systems by liquid chromatography- isotope ratio-mass spectrometry. Limnol. Oceanogr. Methods 4:346-357.
15. Heuer, V. B., J. W. Pohlman, M. E. Torres, M. Elvert, and K.-U. Hinrichs. 2009. The stable carbon isotope biogeochemistry of acetate and other dissolved carbon species in deep subseafloor sediments at the northern Cascadia Margin. Geochim. Cosmochim. Acta 73:3323-3336.
16. Hoehler, T. M. 2007. An energy balance concept for habitability. Astrobiology 7:824-838.
17. Hoehler, T. M., and B. B. Jørgensen. 2013. Microbial life under extreme energy limitation. Nature Rev. Microbiol. 11:83-94.
18. Holmkvist, L., T. G. Ferdelman, and B. B. Jørgensen. 2011. A cryptic sulfur cycle driven by iron in the methane zone of marine sediment (Aarhus Bay, Denmark). Geochim. Cosmochim. Acta 75:3581-3599.
19. Jørgensen, B. B. 1996. Case study-Aarhus Bay, p. 137-154. In Eutrophication in coastal marine ecosystems. Coastal Estuarine Stud. AGU.
20. Jørgensen, B. B, and R. J. Parkes. 2010. Role of sulfate reduction and methane production by organic carbon degradation in eutrophic fjord sediments (Limfjorden, Denmark). Limnol. Oceanogr. 55:1338-1352.
21. King, G. M. 1991. Measurement of acetate concentrations in marine pore waters by using an enzymatic approach. Appl. Environ. Microbiol. 57:3476-3481.
22. Krummen, M., A. W. Hilkert, D. Juchelka, A. Duhr, H. J. Schlüter, and R. Pesch. 2004. A new concept for isotope ratio monitoring liquid chromatography/mass spectrome- try. Rapid Commun. Mass Spectrom. 18:2260-2266.
23. Leloup, J., H. Fossing, K. Kohls, L. Holmkvist, C. Borowski, and B. B. Jørgensen. 2009. Sulfate-reducing bacteria in marine sediment (Aarhus Bay, Denmark): abundance and diversity related to geochemical zonation. Environ. Microbiol. 11:1278-1291.
24. Miller, D., C. Brown, T. Pearson, and S. Stanley. 1979. Some biologically important low molecular weight organic acids in the sediments of Loch Eil. Mar. Biol. 50:375-383.
25. Miwa, H., and M. Yamamoto. 1986. Improved method of determination of biolgically imporant C10:0 - C22:6 fatty acids as their 2-nitropheylhydrazides by reversed-phase high-performance liquid chromatography. J. Chromatogr. A 351:275-282.
26. Mueller-Harvey, I., and R. J. Parkes. 1987. Measurement of volatile fatty acids in pore water from marine sediments by HPLC. Estuar. Coast. Shelf Sci. 25:567-579.
27. Orcutt, B. N., and others. 2013. Microbial activity in the marine deep biosphere: Progress and prospects. Front. Microbiol. 4:189.
28. Parkes, R., and J. Taylor. 1983. Analysis of volatile fatty acids by ion-exclusion chromatography, with special reference to marine pore water. Mar. Biol. 77:113-118.
29. Sansone, F. J., and C. S. Martens. 1981. Determination of volatile fatty acid turnover rates in organic-rich marine sediments. Mar. Chem. 10:233-247.
30. Sansone, F. J., and C. S. Martens. 1982. Volatile fatty acid cycling in organicrich marine sediments. Geochim. Cosmochim. Acta 46:1575-1589.
31. Schrum, H., R. Murray, and B. Gribsholt. 2010. Comparison of Rhizon sampling and whole round squeezing on the accuracy of porewater chemistry measurements in marine sediments. Sci. Drill. 13:47-50.
32. Seeberg-Elverfeldt, J., M. Schlüter, T. Feseker, and M. Kölling. 2005. Rhizon sampling of pore waters near the sediment/ water interface of aquatic systems. Limnol. Oceanogr. Methods 3:361-371.
33. Shaw, D. G., M. J. Alperin, W. S. Reeburgh, and D. J. McIntosh. 1984. Biogeochemistry of acetate in anoxic sediments of Skan Bay, Alaska. Geochim. Cosmochim. Acta 48:1819- 1825.
34. Shaw, D. G, and D. J. McIntosh. 1990. Acetate in recent anoxic sediments: Direct and indirect measurements of concentration and turnover rates. Estuar. Coast. Shelf Sci. 31:775-788.
35. Song, J., Y. M. Luo, Q. G. Zhao, and P. Christie. 2003. Novel use of soil moisture samplers for studies on anaerobic ammonium fluxes across lake sediment-water interfaces. Chemosphere 50:711-715.
36. Sørensen, J., D. Christensen, and B. B. Jørgensen. 1981. Volatile fatty acids and hydrogen as substrates for sulfatereducing bacteria in anaerobic marine sediment. Appl. Environ. Microbiol. 42:5-11.
37. Thamdrup, B. 2000. Bacterial manganese and iron reduction in aquatic sediments. Adv. Microb. Ecol. 16:41-84.
38. Thamdrup, B, H. Fossing, and B. B. Jørgensen. 1994. Manganese, iron and sulfur cycling in a coastal marine sediment, Aarhus Bay, Denmark. Geochim. Cosmochim. Acta 58:5115-5129.
39. U.S. EPA. 2013. Appendix B to Part 136-Definition and procedure for the determination of the method detection limit-Revision 1.11. 40 CFR 136.
40. Vandieken, V., and others. 2012. Three manganese oxide-rich marine sediments harbor similar communities of acetateoxidizing manganese-reducing bacteria. ISME J. 6:2078- 2090.
41. Vandieken, V, and B. Thamdrup. 2013. Identification of acetate-oxidizing bacteria in a coastal marine surface sediment by RNA-stable isotope probing in anoxic slurries and intact cores. FEMS Microbiol. Ecol. 84:373-386.
42. Wang, J., and W. C. Schnute. 2009. Optimizing mass spectrometric detection for ion chromatographic analysis. I. Common anions and selected organic acids. Rapid Commun. Mass Spectrom. 23:3439-3447.
43. Wellsbury, P., K. Goodman, T. Barth, B. A. Cragg, S. P. Barnes, and R. J. Parkes. 1997. Deep marine biosphere fuelled by increasing organic matter availability during burial and heating. Nature 388:573-576.
44. Yo, S.-P. 1999. Analysis of volatile fatty acids in wastewater collected from a pig farm by a solid phase microextraction method. Chemosphere 38:823-834.