메뉴 건너뛰기




Volumn 187, Issue 2, 2014, Pages 112-118

Robust evaluation of 3D electron cryomicroscopy data using tilt-pairs

Author keywords

Cryo EM; Electron cryo microscopy; Protein structure; Single particle reconstruction; Structure validation

Indexed keywords

ARTICLE; CONCEPTUAL FRAMEWORK; CRYOELECTRON MICROSCOPY; DATA ANALYSIS; GONIOMETER; IMAGE QUALITY; INFORMATION PROCESSING; MEASUREMENT ERROR; MOLECULAR WEIGHT; PRIORITY JOURNAL; RIBOSOME; ROTAVIRUS; STATISTICAL ANALYSIS; STATISTICAL BIAS; THREE DIMENSIONAL IMAGING; TILT PAIR; VIRUS PARTICLE; ALGORITHM; CHEMISTRY; IMAGE PROCESSING; PROCEDURES; STATISTICAL MODEL; ULTRASTRUCTURE;

EID: 84905279506     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2014.06.006     Document Type: Article
Times cited : (19)

References (29)
  • 2
    • 84878580683 scopus 로고    scopus 로고
    • Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles
    • Bai X.C., Fernandez I.S., McMullan G., Scheres S.H. Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles. eLife 2013, 2:e00461.
    • (2013) eLife , vol.2
    • Bai, X.C.1    Fernandez, I.S.2    McMullan, G.3    Scheres, S.H.4
  • 3
    • 0026597444 scopus 로고
    • Free R value: a novel statistical quantity for assessing the accuracy of crystal structures
    • Brunger A.T. Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. Nature 1992, 355(6359):472-475.
    • (1992) Nature , vol.355 , Issue.6359 , pp. 472-475
    • Brunger, A.T.1
  • 4
    • 84881432897 scopus 로고    scopus 로고
    • PRIME: probabilistic initial 3D model generation for single-particle cryo-electron microscopy
    • Elmlund H., Elmlund D., Bengio S. PRIME: probabilistic initial 3D model generation for single-particle cryo-electron microscopy. Structure 2013, 21(8):1299-1306.
    • (2013) Structure , vol.21 , Issue.8 , pp. 1299-1306
    • Elmlund, H.1    Elmlund, D.2    Bengio, S.3
  • 5
    • 0001763140 scopus 로고
    • Dispersion on a sphere
    • Fisher R. Dispersion on a sphere. Proc. R. Soc., A 1953, 217:295-305.
    • (1953) Proc. R. Soc., A , vol.217 , pp. 295-305
    • Fisher, R.1
  • 6
    • 47749103686 scopus 로고
    • Robust estimation of the concentration parameter of Fisher's distribution of the sphere
    • Fisher N.I. Robust estimation of the concentration parameter of Fisher's distribution of the sphere. Appl. Stat. 1982, 31(2):152-154.
    • (1982) Appl. Stat. , vol.31 , Issue.2 , pp. 152-154
    • Fisher, N.I.1
  • 7
    • 0013393146 scopus 로고
    • Spherical medians
    • Fisher N.I. Spherical medians. J. R. Stat. Soc. B 1985, 47(2):342-348.
    • (1985) J. R. Stat. Soc. B , vol.47 , Issue.2 , pp. 342-348
    • Fisher, N.I.1
  • 9
    • 65549141835 scopus 로고    scopus 로고
    • The geometric median on Riemannian manifolds with application to robust atlas estimation
    • Fletcher P.T., Venkatasubramanian S., Joshi S. The geometric median on Riemannian manifolds with application to robust atlas estimation. NeuroImage 2009, 45:S143-S152.
    • (2009) NeuroImage , vol.45
    • Fletcher, P.T.1    Venkatasubramanian, S.2    Joshi, S.3
  • 10
    • 0029975088 scopus 로고    scopus 로고
    • SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields
    • Frank J., Radermacher M., Penczek P., Zhu J., Li Y., Ladjadj M., Leith A. SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. J. Struct. Biol. 1996, 116(1):190-199.
    • (1996) J. Struct. Biol. , vol.116 , Issue.1 , pp. 190-199
    • Frank, J.1    Radermacher, M.2    Penczek, P.3    Zhu, J.4    Li, Y.5    Ladjadj, M.6    Leith, A.7
  • 11
    • 33845348200 scopus 로고    scopus 로고
    • FREALIGN: high-resolution refinement of single particle structures
    • Grigorieff N. FREALIGN: high-resolution refinement of single particle structures. J. Struct. Biol. 2007, 157(1):117-125.
    • (2007) J. Struct. Biol. , vol.157 , Issue.1 , pp. 117-125
    • Grigorieff, N.1
  • 13
    • 84887271303 scopus 로고    scopus 로고
    • Avoiding the pitfalls of single particle cryo-electron microscopy: Einstein from noise
    • Henderson R. Avoiding the pitfalls of single particle cryo-electron microscopy: Einstein from noise. Proc. Natl. Acad. Sci. USA 2013, 110(45):18037-18041.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , Issue.45 , pp. 18037-18041
    • Henderson, R.1
  • 14
    • 84876978430 scopus 로고    scopus 로고
    • Problems in obtaining perfect images by single-particle electron cryomicroscopy of biological structures in amorphous ice
    • Henderson R., McMullan G. Problems in obtaining perfect images by single-particle electron cryomicroscopy of biological structures in amorphous ice. Microscopy 2013, 62(1):43-50.
    • (2013) Microscopy , vol.62 , Issue.1 , pp. 43-50
    • Henderson, R.1    McMullan, G.2
  • 16
    • 84897000286 scopus 로고    scopus 로고
    • The resolution revolution
    • Kuhlbrandt W. The resolution revolution. Science 2014, 343(6178):1443-1444.
    • (2014) Science , vol.343 , Issue.6178 , pp. 1443-1444
    • Kuhlbrandt, W.1
  • 20
    • 0142042865 scopus 로고    scopus 로고
    • Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy
    • Rosenthal P.B., Henderson R. Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy. J. Mol. Biol. 2003, 333(4):721-745.
    • (2003) J. Mol. Biol. , vol.333 , Issue.4 , pp. 721-745
    • Rosenthal, P.B.1    Henderson, R.2
  • 21
    • 84868444740 scopus 로고    scopus 로고
    • RELION: implementation of a Bayesian approach to cryo-EM structure determination
    • Scheres S.H. RELION: implementation of a Bayesian approach to cryo-EM structure determination. J. Struct. Biol. 2012, 180(3):519-530.
    • (2012) J. Struct. Biol. , vol.180 , Issue.3 , pp. 519-530
    • Scheres, S.H.1
  • 22
    • 84866078359 scopus 로고    scopus 로고
    • Prevention of overfitting in cryo-EM structure determination
    • Scheres S.H.W., Chen S. Prevention of overfitting in cryo-EM structure determination. Nat. Methods 2012, 9(9):853-854.
    • (2012) Nat. Methods , vol.9 , Issue.9 , pp. 853-854
    • Scheres, S.H.W.1    Chen, S.2
  • 23
    • 8844219659 scopus 로고    scopus 로고
    • Noise bias in the refinement of structures derived from single particles
    • Stewart A., Grigorieff N. Noise bias in the refinement of structures derived from single particles. Ultramicroscopy 2004, 102(1):67-84.
    • (2004) Ultramicroscopy , vol.102 , Issue.1 , pp. 67-84
    • Stewart, A.1    Grigorieff, N.2
  • 26
    • 0002331280 scopus 로고
    • The future of data analysis
    • Tukey J.W. The future of data analysis. Ann. Math. Stat. 1962, 33(1):1-67.
    • (1962) Ann. Math. Stat. , vol.33 , Issue.1 , pp. 1-67
    • Tukey, J.W.1
  • 28
    • 84898601534 scopus 로고    scopus 로고
    • Web server for tilt-pair validation of single particle maps from electron cryomicroscopy
    • Wasilewski S., Rosenthal P.B. Web server for tilt-pair validation of single particle maps from electron cryomicroscopy. J. Struct. Biol. 2014, 186(1):122-131.
    • (2014) J. Struct. Biol. , vol.186 , Issue.1 , pp. 122-131
    • Wasilewski, S.1    Rosenthal, P.B.2
  • 29
    • 84977251048 scopus 로고
    • A test for randomness of directions
    • Watson G. A test for randomness of directions. Mon. Not. R. Astron. Soc. 1956, 7(4):160-161.
    • (1956) Mon. Not. R. Astron. Soc. , vol.7 , Issue.4 , pp. 160-161
    • Watson, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.