Molecular epidemiology of hepatitis delta virus in the Western Pacific region

Journal of Clinical Virology

Volumn 61, Issue 1, 2014, Pages 34-39

  Han, Meifang ^a,b   Littlejohn, Margaret ^a   Yuen, Lilly ^a   Edwards, Rosalind ^a   Devi, Uma ^a   Bowden, Scott ^a   Ning, Qin ^b   Locarnini, Stephen ^a   Jackson, Kathy ^a  

^a VICTORIAN INFECTIOUS DISEASES REFERENCE LABORATORY   (Australia)

^b HUAZHONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

African origins; Genotype; Hepatitis delta virus; Molecular epidemiology; Oceania; Western Pacific region

Indexed keywords

HEPATITIS B SURFACE ANTIGEN; HEPATITIS B VACCINE; HEPATITIS DELTA ANTIGEN; VIRUS DNA; VIRUS RNA;

AMPLICON; ARTICLE; CLADISTICS; DELTA AGENT HEPATITIS; FEDERATED STATES OF MICRONESIA; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HEPATITIS B; HEPATITIS B VIRUS; HEPATITIS DELTA VIRUS; HUMAN; HUMAN TISSUE; KIRIBATI; MAJOR CLINICAL STUDY; MELANESIA; MOLECULAR EPIDEMIOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PACIFIC ISLANDER; PHYLOGENY; POLYNESIA; PREVALENCE; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; SEROTYPE; BLOOD; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; HEPATITIS D; ISOLATION AND PURIFICATION; PACIFIC ISLANDS; SEQUENCE HOMOLOGY; SERUM; VIROLOGY; VIRUS LOAD;

CLUSTER ANALYSIS; GENETIC VARIATION; HEPATITIS B SURFACE ANTIGENS; HEPATITIS D; HEPATITIS DELTA VIRUS; HUMANS; MOLECULAR EPIDEMIOLOGY; PACIFIC ISLANDS; PHYLOGENY; PREVALENCE; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SERUM; VIRAL LOAD;

EID: 84905095929     PISSN: 13866532     EISSN: 18735967     Source Type: Journal    
DOI: 10.1016/j.jcv.2014.05.021     Document Type: Article

References (50)

1. Rizzetto M., Verme G., Recchia S., Bonino F., Farci P., Arico S., et al. Chronic hepatitis in carriers of hepatitis B surface antigen, with intrahepatic expression of the delta antigen. An active and progressive disease unresponsive to immunosuppressive treatment. Ann Intern Med 1983, 98:437-441.
2. Pascarella S., Negro F. Hepatitis D: virus: an update. Liver Int 2010, 31:7-21.
3. Rizzetto M. Hepatitis D: thirty years after. J Hepatol 2009, 50:1043-1050.
4. Raimondo G., Smedile A., Gallo L., Balbo A., Ponzetto A., Rizzetto M. Multicentre study of prevalence of HBV-associated delta infection and liver disease in drug-addicts. Lancet 1982, 1:249-251.
5. Hansson B.G., Moestrup T., Widell A., Nordenfelt E. Infection with delta agent in Sweden: introduction of a new hepatitis agent. J Infect Dis 1982, 146:472-478.
6. Berninger M., Hammer M., Hoyer B., Gerin J.L. An assay for the detection of the DNA genome of hepatitis B virus in serum. J Med Virol 1982, 9:57-68.
7. Dimitrakakis M., Gust I. HDV infection in the Western Pacific region. Prog Clin Biol Res 1991, 364:89-96.
8. Speed B.R., Dimitrakakis M., Thoma K., Gust I.D. Control of HBV and HDV infection in an isolated Pacific Island: 1. Pattern of infection. J Med Virol 1989, 29:13-19.
9. Taylor R., Montaville B., Levy S., Gust I., Moreau J.P., Dimitrakakis M., et al. Hepatitis B infection in Vanuatu: age of acquisition of infection and possible routes of transmission. Asia Pac J Public Health 1989, 3:205-212.
10. Wainwright R.B., McMahon B.J., Bender T.R., Heyward W.L., Nakanishi S., Wainwright K.Y., et al. Prevalence of hepatitis B virus infection in Tonga: identifying high risk groups for immunization with hepatitis B vaccine. Int J Epidemiol 1986, 15:567-571.
11. Wilson N., Ruff T.A., Rana B.J., Leydon J., Locarnini S. The effectiveness of the infant hepatitis B immunisation program in Fiji, Kiribati, Tonga and Vanuatu. Vaccine 2000, 18:3059-3066.
12. Tibbs C.J. Hepatitis B tropical ulcers, and immunisation strategy in Kiribati. Br Med J (Clin Res Ed) 1987, 294:537-540.
13. Tibbs C.J. Delta hepatitis in Kiribati: a pacific focus. J Med Virol 1989, 29:130-132.
14. Brindle R.J., Eglin R.P., Parsons A.J., Hill A.V., Selkon J.B. HTLV-1, HIV-1, hepatitis B and hepatitis delta in the Pacific and South-East Asia: a serological survey. Epidemiol Infect 1988, 100:153-156.
15. Denniston K.J., Hoyer B.H., Smedile A., Wells F.V., Nelson J., Gerin J.L. Cloned fragment of the hepatitis delta virus RNA genome: sequence and diagnostic application. Science 1986, 232:873-875.
16. Shakil A.O., Hadziyannis S., Hoofnagle J.H., Di Bisceglie A.M., Gerin J.L., Casey J.L. Geographic distribution and genetic variability of hepatitis delta virus genotype I. Virology 1997, 234:160-167.
17. Alves C., Branco C., Cunha C. Hepatitis delta virus: a peculiar virus. Adv Virol 2013, 2013(560105). 10.1155/2013/560105.
18. Nakano T., Shapiro C.N., Hadler S.C., Casey J.L., Mizokami M., Orito E., et al. Characterization of hepatitis D virus genotype III among Yucpa Indians in Venezuela. J Gen Virol 2001, 82:2183-2189.
19. Nakano T., Lu L., Hu X., Mizokami M., Orito E., Shapiro C., et al. Characterization of hepatitis B virus genotypes among Yucpa Indians in Venezuela. J Gen Virol 2001, 82:359-365.
20. Sakugawa H., Nakasone H., Nakayoshi T., Kawakami Y., Miyazato S., Kinjo F., et al. Hepatitis delta virus genotype IIb predominates in an endemic area, Okinawa, Japan. J Med Virol 1999, 58:366-372.
21. Deny P. Hepatitis delta virus genetic variability: from genotypes I, II, III to eight major clades?. Curr Top Microbiol Immunol 2006, 307:151-171.
22. Radjef N., Gordien E., Ivaniushina V., Gault E., Anais P., Drugan T., et al. Molecular phylogenetic analyses indicate a wide and ancient radiation of African hepatitis delta virus, suggesting a deltavirus genus of at least seven major clades. J Virol 2004, 78:2537-2544.
23. Chao Y.C., Chang M.F., Gust I., Lai M.M. Sequence conservation and divergence of hepatitis delta virus RNA. Virology 1990, 178:384-392.
24. Wu J.C., Chen C.M., Sheen I.J., Lee S.D., Tzeng H.M., Choo K.B. Evidence of transmission of hepatitis D virus to spouses from sequence analysis of the viral genome. Hepatology 1995, 22:1656-1660.
25. Le Gal F., Badur S., Hawajri N.A., Akyuz F., Kaymakoglu S., Brichler S., et al. Current hepatitis delta virus type 1 (HDV1) infections in central and eastern Turkey indicate a wide genetic diversity that is probably linked to different HDV1 origins. Arch Virol 2012, 157:647-659. 10.1007/s00705-011-1212-8.
26. Basuni A.A., Butterworth L., Cooksley G., Locarnini S., Carman W.F. Prevalence of HBsAg mutants and impact of hepatitis B infant immunisation in four Pacific Island countries. Vaccine 2004, 22:2791-2799.
27. Jazayeri M.S., Basuni A.A., Cooksley G., Locarnini S., Carman W.F. Hepatitis B virus genotypes, core gene variability and ethnicity in the Pacific region. J Hepatol 2004, 41:139-146.
28. Jazayeri S.M., Basuni A.A., Sran N., Gish R., Cooksley G., Locarnini S., et al. HBV core sequence: definition of genotype-specific variability and correlation with geographical origin. J Viral Hepat 2004, 11:488-501.
29. Wang K.S., Choo Q.L., Weiner A.J., Ou J.H., Najarian R.C., Thayer R.M., et al. Structure, sequence and expression of the hepatitis delta (delta) viral genome. Nature 1986, 323:508-514. 10.1038/323508a0.
30. Ayres A., Locarnini S., Bartholomeusz A. HBV genotyping and analysis for unique mutations. Methods Mol Med 2004, 95:125-149.
31. Schaper M., Rodriguez-Frias F., Jardi R., Tabernero D., Homs M., Ruiz G., et al. Quantitative longitudinal evaluations of hepatitis delta virus RNA and hepatitis B virus DNA shows a dynamic, complex replicative profile in chronic hepatitis B and D. J Hepatol 2010, 52:658-664.
32. Lazinski D.W., Taylor J.M. Relating structure to function in the hepatitis delta virus antigen. J Virol 1993, 67:2672-2680.
33. Casey J.L., Brown T.L., Colan E.J., Wignall F.S., Gerin J.L. A genotype of hepatitis D virus that occurs in northern South America. Proc Natl Acad Sci USA 1993, 90:9016-9020.
34. Benson D.A., Karsch-Mizrachi I., Lipman D.J., Ostell J., Wheeler D.L. GenBank. Nucleic Acids Res 2005, 33:D34-D38.
35. Katoh K., Standley D.M. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 2013, 30:772-780.
36. Hall T. Bioedit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser 1999, 41:95-98.
37. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28:2731-2739.
38. Harrison A., Lemey P., Hurles M., Moyes C., Horn S., Pryor J., et al. Genomic analysis of hepatitis B virus reveals antigen state and genotype as sources of evolutionary rate variation. Viruses 2011, 3:83-101. 10.3390/v3020083.
39. Farci P. Delta hepatitis: an update. J Hepatol 2003, 39(Suppl. 1):S212-S219.
40. Zuberi B.F., Quraishy M.S., Afsar S., Akhtar N., Kumar A., Dodani S.K. Treatment outcome in patients of hepatitis B with hepatitis D: experience of 4 years at a tertiary care centre in Pakistan. J Coll Physicians Surg Pak 2007, 17:320-322. doi:06.2007/JCPSP.320322.
41. Braga W.S., Castilho Mda C., Borges F.G., Leao J.R., Martinho A.C., Rodrigues I.S., et al. Hepatitis D virus infection in the Western Brazilian Amazon - far from a vanishing disease. Rev Soc Bras Med Trop 2012, 45:691-695.
42. Bahcecioglu I.H., Aygun C., Gozel N., Poyrazoglu O.K., Bulut Y., Yalniz M. Prevalence of hepatitis delta virus (HDV) infection in chronic hepatitis B patients in eastern Turkey: still a serious problem to consider. J Viral Hepat 2011, 18:518-524. 10.1111/j.1365-2893.2010.01329.x.
43. Lunel-Fabiani F., Mansour W., Amar A.O., Aye M., Le Gal F., Malick F.Z., et al. Impact of hepatitis B and delta virus co-infection on liver disease in Mauritania: a cross sectional study. J Infect 2013, 67:448-457. 10.1016/j.jinf.2013.06.008.
44. Hughes S.A., Wedemeyer H., Harrison P.M. Hepatitis delta virus. Lancet 2011, 378:73-85. 10.1016/S0140-6736(10)61931-9.
45. Rasmussen M., Guo X., Wang Y., Lohmueller K.E., Rasmussen S., Albrechtsen A., et al. An Aboriginal Australian genome reveals separate human dispersals into Asia. Science 2011, 334:94-98. 10.1126/science.1211177.
46. Oppenheimer S. Out of Eden: the peopling of the world 2003, Constable, Robinson, London.
47. Bellwood P.S. The colonization of the Pacific: some current hypotheses. The colonization of the Pacific: a genetic trail, esearch monographs on human population biology 1989, 298. Clarendon Press, Oxford University Press, Oxford, England/New York. A.V.S. Hill, S.W. Serjeantson (Eds.).
48. Gao X., Zimmet P., Serjeantson S.W. HLA-DR, DQ sequence polymorphisms in Polynesians, Micronesians, and Javanese. Hum Immunol 1992, 34:153-161.
49. Lum J.K., Cann R.L. mtDNA lineage analyses: origins and migrations of Micronesians and Polynesians. Am J Phys Anthropol 2000, 113:151-168. 10.1002/1096-8644(200010)113:2<151::AID-AJPA2>3.0.CO;2-N.
50. Hurles M.E., Nicholson J., Bosch E., Renfrew C., Sykes B.C., Jobling M.A. Y chromosomal evidence for the origins of oceanic-speaking peoples. Genetics 2002, 160:289-303.