-
1
-
-
77957141016
-
Inferring the conservative causal core of gene regulatory networks
-
Altay, G. and Emmert-Streib, F. (2010) Inferring the conservative causal core of gene regulatory networks. BMC Syst. Biol., 4, 132.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 132
-
-
Altay, G.1
Emmert-Streib, F.2
-
2
-
-
77954484005
-
Revealing differences in gene network inference algorithms on the network-level by ensemble methods
-
Altay, G. and Emmert-Streib, F. (2010) Revealing differences in gene network inference algorithms on the network-level by ensemble methods. Bioinformatics, 26, 1738-1744.
-
(2010)
Bioinformatics
, vol.26
, pp. 1738-1744
-
-
Altay, G.1
Emmert-Streib, F.2
-
3
-
-
79960556206
-
Differential C3NET reveals disease networks of direct physical interactions
-
Altay, G. et al. (2011) Differential C3NET reveals disease networks of direct physical interactions. BMC Bioinformatics, 12, 296.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 296
-
-
Altay, G.1
-
4
-
-
84859863444
-
Empirically determining the sample size for large-scale gene network inference algorithms
-
Altay, G. (2012) Empirically determining the sample size for large-scale gene network inference algorithms. IET Syst. Biol., 6, 35-63.
-
(2012)
IET Syst. Biol.
, vol.6
, pp. 35-63
-
-
Altay, G.1
-
5
-
-
0033655775
-
Mutual information relevance networks: Functional genomic clustering using pairwise entropy measurements
-
Butte, A.J. and Kohane, L.S. (2000) Mutual information relevance networks: Functional genomic clustering using pairwise entropy measurements. Pac. Symp. Biocomput., 2000, 418-429.
-
(2000)
Pac. Symp. Biocomput.
, vol.2000
, pp. 418-429
-
-
Butte, A.J.1
Kohane, L.S.2
-
6
-
-
70249151450
-
Metabolic network discovery through reverse engineering of metabolome data
-
Cakr, T. et al. (2009) Metabolic network discovery through reverse engineering of metabolome data. Metabolomics, 5, 318-329.
-
(2009)
Metabolomics
, vol.5
, pp. 318-329
-
-
Cakr, T.1
-
7
-
-
13244267007
-
Estimating mutual information using B-spline functions-An improved similarity measure for analysing gene expression data
-
Daub, C.O. et al. (2004) Estimating mutual information using B-spline functions-An improved similarity measure for analysing gene expression data. BMC Bioinformatics, 5, 118.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 118
-
-
Daub, C.O.1
-
8
-
-
12344321571
-
Discovery of meaningful associations in genomic data using partial correlation coefficients
-
De la Fuente, A. et al. (2004) Discovery of meaningful associations in genomic data using partial correlation coefficients. Bioinformatics, 20, 3565-3574.
-
(2004)
Bioinformatics
, vol.20
, pp. 3565-3574
-
-
De La Fuente, A.1
-
9
-
-
33846400424
-
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
-
Faith, J.J. et al. (2007) Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol., 5, e8.
-
(2007)
PLoS Biol.
, vol.5
-
-
Faith, J.J.1
-
10
-
-
38549134505
-
Many microbe microarrays database: Uniformly normalized Affymetrix compendia with structured experimental metadata
-
Faith, J.J. et al. (2008) Many microbe microarrays database: Uniformly normalized Affymetrix compendia with structured experimental metadata. Nucleic Acids Res., 36 (Suppl. 1), D866-D870.
-
(2008)
Nucleic Acids Res.
, vol.36
, Issue.SUPPL.1
-
-
Faith, J.J.1
-
11
-
-
38549140094
-
RegulonDB (version 6.0): Gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation
-
Gama-Castro, S. et al. (2008) RegulonDB (version 6.0): Gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. Nuclic Acids Res., 36 (Suppl. 1), D120-D124.
-
(2008)
Nuclic Acids Res.
, vol.36
, Issue.SUPPL.1
-
-
Gama-Castro, S.1
-
12
-
-
68949161935
-
Entropy inference and the James-Stein estimator with application to nonlinear gene association networks
-
Hausser, J. and Strimmer, K. (2009) Entropy inference and the James-Stein estimator, with application to nonlinear gene association networks. J. Mach. Learn. Res., 10, 1469-1484.
-
(2009)
J. Mach. Learn. Res.
, vol.10
, pp. 1469-1484
-
-
Hausser, J.1
Strimmer, K.2
-
13
-
-
84878025952
-
A consistent multivariate test of association based on ranks of distances
-
Heller, R. et al. (2013) A consistent multivariate test of association based on ranks of distances. Biometrika, 100, 503-510.
-
(2013)
Biometrika
, vol.100
, pp. 503-510
-
-
Heller, R.1
-
14
-
-
39749164774
-
Estimating mutual information
-
Kraskov, A. et al. (2004) Estimating mutual information. Phys. Rev. E, 83, 019903.
-
(2004)
Phys. Rev. E
, vol.83
, pp. 019903
-
-
Kraskov, A.1
-
15
-
-
84905004508
-
Influence of the copula transform on the association estimators for gene network inference
-
Istanbul, Turkey, Sep 9-11
-
Kurt, Z. et al. (2013) Influence of the copula transform on the association estimators for gene network inference. In: International Conference on Applied Informatics for Health and Life Sciences (AIHLS). Istanbul, Turkey, Sep 9-11, pp. 67-72.
-
(2013)
International Conference on Applied Informatics for Health and Life Sciences (AIHLS)
, pp. 67-72
-
-
Kurt, Z.1
-
16
-
-
41549138299
-
An improved, bias-reduced probabilistic functional gene network of baker' s yeast, Saccharomyces cerevisiae
-
Lee, I. et al. (2007) An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae. PLoS One, 2, e988.
-
(2007)
PLoS One
, vol.2
-
-
Lee, I.1
-
17
-
-
33947305781
-
ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
-
Margolin, A.A. et al. (2006) ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. BMC Bioinformatics, 7 (Suppl. 1), S7.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL.1
-
-
Margolin, A.A.1
-
18
-
-
67649935298
-
Measuring correlations in metabolomic networks with mutual information
-
Numata, J. et al. (2008) Measuring correlations in metabolomic networks with mutual information. Genome Inform., 20, 112-122.
-
(2008)
Genome Inform.
, vol.20
, pp. 112-122
-
-
Numata, J.1
-
19
-
-
59849099039
-
On the impact of entropy estimation on transcriptional regulatory network inference based on mutual information
-
Olsen, C. et al. (2009) On the impact of entropy estimation on transcriptional regulatory network inference based on mutual information. EURASIP J. Bioinform. Syst. Biol., 2009, 308959.
-
(2009)
EURASIP J. Bioinform. Syst. Biol.
, vol.2009
, pp. 308959
-
-
Olsen, C.1
-
20
-
-
0041877169
-
Estimation of entropy and mutual information
-
Paninski, L. (2003) Estimation of entropy and mutual information. Neural Comput., 15, 1191-1253.
-
(2003)
Neural Comput.
, vol.15
, pp. 1191-1253
-
-
Paninski, L.1
-
21
-
-
77953142374
-
Evaluation of mutual information estimators on nonlinear dynamic systems
-
Papana, A. and Kugiumtzis, D. (2008) Evaluation of mutual information estimators on nonlinear dynamic systems. Nonlinear Phenom. Complex Syst., 11, 225-232.
-
(2008)
Nonlinear Phenom. Complex Syst.
, vol.11
, pp. 225-232
-
-
Papana, A.1
Kugiumtzis, D.2
-
22
-
-
83755163018
-
Detecting novel associations in large data sets
-
Reshef, D.N. et al. (2011) Detecting novel associations in large data sets. Science, 334, 1518-1524.
-
(2011)
Science
, vol.334
, pp. 1518-1524
-
-
Reshef, D.N.1
-
23
-
-
84855265038
-
Influence of statistical estimators of mutual information and data heterogeneity on the inference of gene regulatory networks
-
Simoes, R.M. and Emmert-Streib, F. (2011) Influence of statistical estimators of mutual information and data heterogeneity on the inference of gene regulatory networks. PLoS One, 6, e29279.
-
(2011)
PLoS One
, vol.6
-
-
Simoes, R.M.1
Emmert-Streib, F.2
-
24
-
-
60849121715
-
Mutual information estimation reveals global associations between stimuli and biological processes
-
Suzuki, T. et al. (2009) Mutual information estimation reveals global associations between stimuli and biological processes. BMC Bioinformatics, 10 (Suppl. 1), S52.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.SUPPL.1
-
-
Suzuki, T.1
-
25
-
-
33144486498
-
SynTReN: A generator of synthetic gene expression data for design and analysis of structure learning algorithms
-
Van den Bulcke, T. et al. (2006) SynTReN: A generator of synthetic gene expression data for design and analysis of structure learning algorithms. BMC Bioinformatics, 7, 43.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 43
-
-
Van Den Bulcke, T.1
|