Automatic sleep classification using a data-driven topic model reveals latent sleep states

Journal of Neuroscience Methods

Volumn 235, Issue , 2014, Pages 130-137

  Koch, Henriette ^a   Christensen, Julie A E ^a,b,c   Frandsen, Rune ^b,d   Zoetmulder, Marielle ^e   Arvastson, Lars ^c   Christensen, Soren R ^c   Jennum, Poul ^b,d   Sorensen, Helge B D ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^b GLOSTRUP UNIVERSITY HOSPITAL   (Denmark)

^c H LUNDBECK A S   (Denmark)

^d UNIVERSITY OF COPENHAGEN   (Denmark)

^e BISPEBJERG HOSPITAL   (Denmark)

Author keywords

Automatic sleep classification; Electroencephalography (EEG); Electrooculography (EOG); Neurodegenerative diseases; Sleep state switching; Topic modeling

Indexed keywords

ARTICLE; AUTOMATIC SLEEP CLASSIFIER; BAYES THEOREM; CLASSIFICATION ALGORITHM; CLASSIFIER; CONTROLLED STUDY; ELECTROENCEPHALOGRAPHY; ELECTROOCULOGRAPHY; HUMAN; IDIOPATHIC DISEASE; LATENT DIRICHLET ALLOCATION MODEL; MAJOR CLINICAL STUDY; NONREM SLEEP; PARASOMNIA; PARKINSON DISEASE; PERIODIC LIMB MOVEMENT DISORDER; PRIORITY JOURNAL; REM SLEEP; SLEEP; SLEEP STAGE; AGED; AUTOMATED PATTERN RECOGNITION; BRAIN; EYE; FEMALE; MALE; MIDDLE AGED; PATHOPHYSIOLOGY; PHYSIOLOGY; POLYSOMNOGRAPHY; PROBABILITY; PROCEDURES; SENSITIVITY AND SPECIFICITY; SIGNAL PROCESSING; VALIDATION STUDY; VISUAL SYSTEM FUNCTION;

AGED; BRAIN; ELECTROENCEPHALOGRAPHY; ELECTROOCULOGRAPHY; EYE; FEMALE; HUMANS; MALE; MIDDLE AGED; NOCTURNAL MYOCLONUS SYNDROME; OCULAR PHYSIOLOGICAL PHENOMENA; PARKINSON DISEASE; PATTERN RECOGNITION, AUTOMATED; POLYSOMNOGRAPHY; PROBABILITY; REM SLEEP BEHAVIOR DISORDER; SENSITIVITY AND SPECIFICITY; SIGNAL PROCESSING, COMPUTER-ASSISTED; SLEEP;

EID: 84904872865     PISSN: 01650270     EISSN: 1872678X     Source Type: Journal    
DOI: 10.1016/j.jneumeth.2014.07.002     Document Type: Article

References (15)

1. Ahmed B., Tafreshi R. Advances in automatic sleep analysis. IFMBE proc. 2009, 422-426. 10.1007/978-3-540-92841-6_104.
2. Blei D.M., Ng A.Y., Jordan M.I. Latent Dirichlet allocation. J Mach Learn Res 2003, 3:993-1022.
3. Christensen J.A.E., Koch H., Frandsen R., Kempfner J., Arvastson L., Christensen S.R., et al. Classification of iRBD and Parkinson's disease patients based on eye movements during sleep. Conf proc IEEE eng med biol soc 2013, 441-444. 10.1109/EMBC.2013.6609531.
4. Christensen J.A.E., Zoetmulder M., Koch H., Frandsen R., Arvastson L., Christensen S.R., Jennum P., Sorensen H.B.D., et al. Data-driven modeling of sleep EEG and EOG reveals characteristics indicative of pre-Parkinson's and Parkinson's disease. J Neurosci Methods 2014, submitted for publication.
5. Crowley K. Sleep and sleep disorders in older adults. Neuropsychol Rev 2011, 21(1):41-53. 10.1007/s11065-010-9154-6.
6. Dyken M.E., Afifi A.K., Lin-Dyken D.C. Sleep-related problems in neurologic diseases. Chest 2012, 141(2):528-544. 10.1378/chest. 11-0773.
7. Iber C., Ancoli-Israel S., Chesson A., Quan S.F. The AASM manual for the scoring of sleep and associated events: rules, terminology, and technical specifications 2007, American Academy of Sleep Medicine, Westchester.
8. Koch H., Christensen J.A.E., Frandsen R., Arvastson L., Christensen S.R., Sorensen H.B.D., et al. Classification of iRBD and Parkinson's patients using a general data-driven sleep staging model built on EEG. Conf proc IEEE eng med biol soc 2013, 4275-4278. 10.1109/EMBC.2013.6610490.
9. Lin J., Keogh E., Lonardi S., Chiu B. A symbolic representation of time series, with implications for streaming algorithms. Conf proc DMKD 2003, 2-11. 10.1145/882082.882086.
10. Luppi P.-H., Clément O., Sapin E., Gervasoni D., Peyron C., Léger L., et al. The neuronal network responsible for paradoxical sleep and its dysfunctions causing narcolepsy and rapid eye movement (REM) behavior disorder. Sleep Med Rev 2011, 15(3):153-163. 10.1016/j.smrv.2010.08.002.
11. Micallef J., Rey M., Eusebio A., Audebert C., Rouby F., Jouve E., et al. Antiparkinsonian drug-induced sleepiness: a double-blind placebo-controlled study of L-dopa, bromocriptine and pramipexole in healthy subjects. Brit J Clin Pharmacol 2009, 67(3):333-340. 10.1111/j. 1365-2125.2008.03310.x.
12. Rechtschaffen A., Kales A. A manual of standardized terminology, techniques and scoring system for sleep stages of human subjects 1968, University of California, Los Angeles.
13. Santamaria J., Högl B., Trenkwalder C., Bliwise D. Scoring sleep in neurological patients: the need for specific considerations. Sleep 2011, 34(10):1283-1284. 10.5665/sleep.1256.
14. Saper C.B., Fuller P.M., Pedersen N.P., Lu J., Scammell T.E. Sleep state switching. Neuron 2010, 68(6):1023-1042. 10.1016/j.neuron.2010.11.032.
15. Verbeek J, Matlab toolbox: Latent Dirichlet Allocation toolbox, 2006. [accessed 10.23.12]. http://lear.inrialpes.fr_verbeek/software.php.