Development of New PCR Primers by Comparative Genomics for the Detection of Helicobacter suis in Gastric Biopsy Specimens

Helicobacter

Volumn 19, Issue 4, 2014, Pages 260-271

  Matsui, Hidenori ^a   Takahashi, Tetsufumi ^a   Murayama, Somay Y ^b   Uchiyama, Ikuo ^c   Yamaguchi, Katsushi ^c   Shigenobu, Shuji ^c   Matsumoto, Takehisa ^d   Kawakubo, Masatomo ^d   Horiuchi, Kazuki ^d   Ota, Hiroyoshi ^d   Osaki, Takako ^e   Kamiya, Shigeru ^e   Smet, Annemieke ^f   Flahou, Bram ^f   Ducatelle, Richard ^f   Haesebrouck, Freddy ^f   Takahashi, Shinichi ^e   Nakamura, Shinichi ^g   Nakamura, Masahiko ^a  

^a KITASATO UNIVERSITY   (Japan)

^b NIHON UNIVERSITY   (Japan)

^c NATIONAL INSTITUTE FOR BASIC BIOLOGY   (Japan)

^d SHINSHU UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^e KYORIN UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^f GHENT UNIVERSITY   (Belgium)

^g TOKYO WOMEN'S MEDICAL UNIVERSITY   (Japan)

Author keywords

Comparative genomics; Gastric biopsy specimen; Helicobacter suis; Mouse infection model; Next generation sequencing; PCR diagnosis

Indexed keywords

ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; BACTERIAL GENETICS; BACTERIAL STRAIN; BACTERIUM DETECTION; BACTERIUM ISOLATE; C57BL 6 MOUSE; CAMPYLOBACTER; CONTROLLED STUDY; FEMALE; GASTRITIS; HELICOBACTER; HELICOBACTER INFECTION; HELICOBACTER SUIS; HOMOGENATE; LYMPH FOLLICLE; MACACA FASCICULARIS; MARGINAL ZONE LYMPHOMA; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; STOMACH BIOPSY; STOMACH LYMPHOMA; STOMACH MUCOSA; ANIMAL; BACTERIAL GENOME; BIOPSY; C57BL MOUSE; CHEMISTRY; DIAGNOSTIC USE; DISEASE MODEL; DNA SEQUENCE; GENETICS; HELICOBACTER HEILMANNII; HELICOBACTER INFECTIONS; HUMAN; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; MOLECULAR PATHOLOGY; PROCEDURES;

CAMPYLOBACTER; CANDIDATUS HELICOBACTER SUIS; HELICOBACTER; HELICOBACTER PYLORI; MACACA FASCICULARIS; MUS;

BACTERIAL DNA; PRIMER DNA;

ANIMALS; BIOPSY; DISEASE MODELS, ANIMAL; DNA PRIMERS; DNA, BACTERIAL; FEMALE; GASTRIC MUCOSA; GENOME, BACTERIAL; HELICOBACTER HEILMANNII; HELICOBACTER INFECTIONS; HUMANS; MACACA FASCICULARIS; MICE, INBRED C57BL; MOLECULAR SEQUENCE DATA; PATHOLOGY, MOLECULAR; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA;

EID: 84904744624     PISSN: 10834389     EISSN: 15235378     Source Type: Journal    
DOI: 10.1111/hel.12127     Document Type: Article

References (50)

1. Suerbaum S, Josenhans C. Helicobacter pylori evolution and phenotypic diversification in a changing host. Nat Rev 2007;5:441-52.
2. Baele M, Pasmans F, Flahou B, Chiers K, Ducatelle R, Haesebrouck F. Non-Helicobacter pylori helicobacters detected in the stomach of humans comprise several naturally occurring Helicobacter species in animals. FEMS Immunol Med Microbiol 2009;55:306-13.
3. Matsui H, Sekiya Y, Aikawa C, Murayama SY, Takahashi T, Yoshida H, Takahashi T, Tsuchimoto K, Nakamura M. "Candidatus Helicobacter heilmannii" infection in the course of gastric mucosa-associated lymphoid tissue (MALT) lymphoma in human beings and mouse models. Curr Trends Microbiol 2010;6:27-34.
4. Haesebrouck F, Pasmans F, Flahou B, Chiers K, Baele M, Meyns T, Decostere A, Ducatelle R. Gastric helicobacters in domestic animals and nonhuman primates and their significance for human health. Clin Microbiol Rev 2009;22:202-23.
5. Baele M, Decostere A, Vandamme P, Ceelen L, Hellemans A, Mast J, Chiers K, Ducatelle R, Haesebrouck F. Isolation and characterization of Helicobacter suis sp. nov. from pig stomachs. Int J Syst Evol Microbiol 2008;58:1350-8.
6. Haesebrouck F, Pasmans F, Flahou B, Smet A, Vandamme P, Ducatelle R. Non-Helicobacter pylori Helicobacter species in the human gastric mucosa: a proposal to introduce the terms H. heilmannii sensu lato and sensu stricto. Helicobacter 2011;16:339-40.
7. Chen Y, Zhou D, Wang J. Biological diagnostic and therapeutic study on the infection of Helicobacter heilmannii. Zhonghua Yi Xue Za Zhi 1998;78:490-3.
8. Iwanczak B, Biernat M, Iwanczak F, Grabinska J, Matusiewicz K. The clinical aspects of Helicobacter heilmannii infection in children with dyspeptic symptoms. J Physiol Pharmacol 2012;63:133-6.
9. Okiyama Y, Matsuzawa K, Hidaka E, Sano K, Akamatsu T, Ota H. Helicobacter heilmannii infection: clinical, endoscopic and histopathological features in Japanese patients. Pathol Int 2005;55:398-404.
10. Nel W. Gastritis and gastropathy: more than meets the eye. Contin Med Educ 2012;30:61-2, 64-6.
11. Fox JG. The non-H pylori helicobacters: their expanding role in gastrointestinal and systemic diseases. Gut 2002;50:273-83.
12. Stolte M, Bayerdorffer E, Morgner A, Alpen B, Wundisch T, Thiede C, Neubauer A. Helicobacter and gastric MALT lymphoma. Gut 2002;50(Suppl 3):iii19-24.
13. Chisholm SA, Owen RJ. Development and application of a novel screening PCR assay for direct detection of 'Helicobacter heilmannii'-like organisms in human gastric biopsies in Southeast England. Diagn Microbiol Infect Dis 2003;46:1-7.
14. Boyanova L, Lazarova E, Jelev C, Gergova G, Mitov I. Helicobacter pylori and Helicobacter heilmannii in untreated Bulgarian children over a period of 10 years. J Med Microbiol 2007;56:1081-5.
15. Trebesius K, Adler K, Vieth M, Stolte M, Haas R. Specific detection and prevalence of Helicobacter heilmannii-like organisms in the human gastric mucosa by fluorescent in situ hybridization and partial 16S ribosomal DNA sequencing. J Clin Microbiol 2001;39:1510-6.
16. Boyanova L, Koumanova R, Lazarova E, Jelev C. Helicobacter pylori and Helicobacter heilmannii in children. A Bulgarian study. Diagn Microbiol Infect Dis 2003;46:249-52.
17. Ierardi E, Monno RA, Gentile A, Francavilla R, Burattini O, Marangi S, Pollice L, Francavilla A. Helicobacter heilmannii gastritis: a histological and immunohistochemical trait. J Clin Pathol 2001;54:774-7.
18. Debongnie JC, Donnay M, Mairesse J. Gastrospirillum hominis ("Helicobacter heilmanii"): a cause of gastritis, sometimes transient, better diagnosed by touch cytology? Am J Gastroenterol 1995;90:411-6.
19. Heilmann KL, Borchard F. Gastritis due to spiral shaped bacteria other than Helicobacter pylori: clinical, histological, and ultrastructural findings. Gut 1991;32:137-40.
20. Yakoob J, Abbas Z, Khan R, Naz S, Ahmad Z, Islam M, Awan S, Jafri F, Jafri W. Prevalence of non Helicobacter pylori species in patients presenting with dyspepsia. BMC Gastroenterol 2012;12:3.
21. De Groote D, Van Doorn LJ, Van den Bulck K, Vandamme P, Vieth M, Stolte M, Debongnie JC, Burette A, Haesebrouck F, Ducatelle R. Detection of non-pylori Helicobacter species in "Helicobacter heilmannii"-infected humans. Helicobacter 2005;10:398-406.
22. Van den Bulck K, Decostere A, Baele M, Driessen A, Debongnie JC, Burette A, Stolte M, Ducatelle R, Haesebrouck F. Identification of non-Helicobacter pylori spiral organisms in gastric samples from humans, dogs, and cats. J Clin Microbiol 2005;43:2256-60.
23. Morgner A, Lehn N, Andersen LP, Thiede C, Bennedsen M, Trebesius K, Neubauer B, Neubauer A, Stolte M, Bayerdorffer E. Helicobacter heilmannii-associated primary gastric low-grade MALT lymphoma: complete remission after curing the infection. Gastroenterology 2000;118:821-8.
24. Fritz EL, Slavik T, Delport W, Olivier B, van der Merwe SW. Helicobacter heilmannii-associated primary gastric low-grade MALT lymphoma: complete remission after curing the infection. Gastroenterology 2006;118:821-8.
25. Nakamura M, Matsui H, Murayama SY, Matsumoto T, Yamada H, Takahashi S, Tsuchimoto K. Interaction of VEGF to gastric low grade MALT lymphoma by Helicobacter heilmannii infection in C57BL/6 mice. Inflammopharmacology 2007;15:115-8.
26. Nakamura M, Murayama SY, Serizawa H, et al. "Candidatus Helicobacter heilmannii" from a cynomolgus monkey induces gastric mucosa-associated lymphoid tissue lymphoma in C57BL/6 mice. Infect Immun 2007;75:1214-22.
27. Nakamura M, Takahashi S, Matsui H, Murayama SY, Aikawa C, Sekiya Y, Nishikawa K, Matsumoto T, Yamada H, Tsuchimoto K. Microcirculatory alteration in low-grade gastric mucosa-associated lymphoma by Helicobacter heilmannii infection: its relation to vascular endothelial growth factor and cyclooxygenase-2. J Gastroenterol Hepatol 2008;23(Suppl 2):S157-60.
28. Nishikawa K, Nakamura M, Takahashi S, Matsui H, Murayama SY, Matsumoto T, Yamada H, Tsuchimoto K. Increased apoptosis and angiogenesis in gastric low-grade mucosa-associated lymphoid tissue-type lymphoma by Helicobacter heilmannii infection in C57/BL6 mice. FEMS Immunol Med Microbiol 2007;50:268-72.
29. Yonezawa H, Osaki T, Kurata S, Fukuda M, Kawakami H, Ochiai K, Hanawa T, Kamiya S. Outer membrane vesicles of Helicobacter pylori TK1402 are involved in biofilm formation. BMC Microbiol 2009;9:197.
30. Yonezawa H, Osaki T, Kurata S, Zaman C, Hanawa T, Kamiya S. Assessment of in vitro biofilm formation by Helicobacter pylori. J Gastroenterol Hepatol 2010;25(Suppl 1):S90-4.
31. Yonezawa H, Osaki T, Hanawa T, Kurata S, Zaman C, Woo TD, Takahashi M, Matsubara S, Kawakami H, Ochiai K, Kamiya S. Destructive effects of butyrate on the cell envelope of Helicobacter pylori. J Med Microbiol 2012;61:582-9.
32. Yonezawa H, Osaki T, Woo T, Kurata S, Zaman C, Hojo F, Hanawa T, Kato S, Kamiya S. Analysis of outer membrane vesicle protein involved in biofilm formation of Helicobacter pylori. Anaerobe 2011;17:388-90.
33. Vermoote M, Vandekerckhove TT, Flahou B, Pasmans F, Smet A, De Groote D, Van Criekinge W, Ducatelle R, Haesebrouck F. Genome sequence of Helicobacter suis supports its role in gastric pathology. Vet Res 2011;42:51.
34. Joosten M, Blaecher C, Flahou B, Ducatelle R, Haesebrouck F, Smet A. Diversity in bacterium-host interactions within the species Helicobacter heilmannii sensu stricto. Vet Res 2013;44:65.
35. Baele M, Decostere A, Vandamme P, Van den Bulck K, Gruntar I, Mehle J, Mast J, Ducatelle R, Haesebrouck F. Helicobacter baculiformis sp. nov., isolated from feline stomach mucosa. Int J Syst Evol Microbiol 2008;58:357-64.
36. Baele M, Van den Bulck K, Decostere A, Vandamme P, Hanninen ML, Ducatelle R, Haesebrouck F. Multiplex PCR assay for differentiation of Helicobacter felis, H. bizzozeronii, and H. salomonis. J Clin Microbiol 2004;42:1115-22.
37. Van den Bulck K, Decostere A, Baele M, Vandamme P, Mast J, Ducatelle R, Haesebrouck F. Helicobacter cynogastricus sp. nov., isolated from the canine gastric mucosa. Int J Syst Evol Microbiol 2006;56:1559-64.
38. Matsui H, Aikawa C, Sekiya Y, Takahashi S, Murayama SY, Nakamura M. Evaluation of antibiotic therapy for eradication of "Candidatus Helicobatcer heilmannii". Antimicrob Agents Chemother 2008;52:2988-9.
39. Muyzer G, de Waal EC, Uitterlinden AG. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 1993;59:695-700.
40. Hu JK, McGlinn E, Harfe BD, Kardon G, Tabin CJ. Autonomous and nonautonomous roles of Hedgehog signaling in regulating limb muscle formation. Genes Dev 2012;26:2088-102.
41. Matsui H, Sekiya Y, Nakamura M, et al. CD46 transgenic mouse model of necrotizing fasciitis caused by Streptococcus pyogenes infection. Infect Immun 2009;77:4806-14.
42. Nakamura M, Matsui H, Takahashi T, Ogawa S, Tamura R, Murayama SY, Takahashi S, Tsuchimoto K. Suppression of lymphangiogenesis induced by Flt-4 antibody in gastric low-grade mucosa-associated lymphoid tissue lymphoma by Helicobacter heilmannii infection. J Gastroenterol Hepatol 2010;25(Suppl 1):S1-6.
43. Nobutani K, Yoshida M, Nishiumi S, et al. Helicobacter heilmannii can induce gastric lymphoid follicles in mice via a Peyer's patch-independent pathway. FEMS Immunol Med Microbiol 2010;60:156-64.
44. Pena JA, Li SY, Wilson PH, Thibodeau SA, Szary AJ, Versalovic J. Genotypic and phenotypic studies of murine intestinal lactobacilli: species differences in mice with and without colitis. Appl Environ Microbiol 2004;70:558-68.
45. Hoshino A, Ohnishi N, Yasuhara M, Yamamoto K, Kondo A. Separation of murine neutrophils and macrophages by thermoresponsive magnetic nanoparticles. Biotechnol Prog 2007;23:1513-6.
46. O'Rourke JL, Solnick JV, Neilan BA, Seidel K, Hayter R, Hansen LM, Lee A. Description of 'Candidatus Helicobacter heilmannii' based on DNA sequence analysis of 16S rRNA and urease genes. Int J Syst Evol Microbiol 2004;54:2203-11.
47. Blaecher C, Smet A, Flahou B, et al. Significantly higher frequency of Helicobacter suis in patients with idiopathic parkinsonism than in control patients. Aliment Pharmacol Ther 2013;38:1347-53.
48. Chattopadhyay S, Mukherjee A, Ghosh S. Molecular cloning and sequencing of an operon, carRS of Azospirillum brasilense, that codes for a novel two-component regulatory system: demonstration of a positive regulatory role of carR for global control of carbohydrate catabolism. J Bacteriol 1994;176:7484-90.
49. Park JH, Seok SH, Baek MW, Lee HY, Kim DJ. Gastric lesions and immune responses caused by long-term infection with Helicobacter heilmannii in C57BL/6 mice. J Comp Pathol 2008;139:208-17.
50. Flahou B, Haesebrouck F, Pasmans F, D'Herde K, Driessen A, Van Deun K, Smet A, Duchateau L, Chiers K, Ducatelle R. Helicobacter suis causes severe gastric pathology in mouse and Mongolian gerbil models of human gastric disease. PLoS ONE 2010;5:e14083.