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Volumn 4, Issue , 2014, Pages

Long-range PCR in next-generation sequencing: Comparison of six enzymes and evaluation on the MiSeq sequencer

Author keywords

[No Author keywords available]

Indexed keywords

DNA DIRECTED DNA POLYMERASE;

EID: 84904699202     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep05737     Document Type: Article
Times cited : (62)

References (27)
  • 1
    • 0022372670 scopus 로고
    • Enzymatic amplification of β-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia
    • Saiki, R. et al. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230, 1350-1354 (1985). (Pubitemid 16105164)
    • (1985) Science , vol.230 , Issue.4732 , pp. 1350-1354
    • Saiki, R.K.1    Scharf, S.2    Faloona, F.3
  • 2
    • 0023753018 scopus 로고
    • Diagnosis of sickle cell anemia and beta-thalassemia with enzymatically amplified DNA and nonradioactive allele-specific oligonucleotide probes
    • Saiki, R. et al. Diagnosis of sickle cell anemia and beta-thalassemia with enzymatically amplified DNA and nonradioactive allele-specific oligonucleotide probes. N. Engl. J. Med. 19, 537-541 (1988).
    • (1988) N. Engl. J. Med. , vol.19 , pp. 537-541
    • Saiki, R.1
  • 3
    • 0026534432 scopus 로고
    • The fidelity of Taq polymerase catalyzing PCR is improved by an Nterminal deletion
    • Barnes, W. The fidelity of Taq polymerase catalyzing PCR is improved by an Nterminal deletion. Gene 112, 29-35 (1992).
    • (1992) Gene , vol.112 , pp. 29-35
    • Barnes, W.1
  • 5
    • 84875457774 scopus 로고    scopus 로고
    • Detection of novel mutations that cause autosomal dominant retinitis pigmentosa in candidate genes by long-range PCR amplification and next generation sequencing
    • Dias, M. D. S. et al. Detection of novel mutations that cause autosomal dominant retinitis pigmentosa in candidate genes by long-range PCR amplification and next generation sequencing. Mol. Vis. 19, 654-664 (2013).
    • (2013) Mol. Vis. , vol.19 , pp. 654-664
    • Dias, M.D.S.1
  • 6
    • 84862685238 scopus 로고    scopus 로고
    • A novel long-range PCR sequencing method for genetic analysis of the entire PKD1 gene
    • Tan, Y. et al. A novel long-range PCR sequencing method for genetic analysis of the entire PKD1 gene. J. Mol. Diagn. 14, 305-313 (2012).
    • (2012) J. Mol. Diagn. , vol.14 , pp. 305-313
    • Tan, Y.1
  • 7
    • 82355193803 scopus 로고    scopus 로고
    • Systematic comparison of three methods for fragmentation of long-range PCR products for next generation sequencing
    • Knierim, E., Lucke, B., Schwarz, J. M., Schuelke, M. & Seelow, D. Systematic comparison of three methods for fragmentation of long-range PCR products for next generation sequencing. PLoS ONE 6, e28240 (2011).
    • (2011) PLoS ONE , vol.6
    • Knierim, E.1    Lucke, B.2    Schwarz, J.M.3    Schuelke, M.4    Seelow, D.5
  • 8
    • 84865070623 scopus 로고    scopus 로고
    • Long-range PCR and next-generation sequencing of BRCA1 and BRCA2 in breast cancer
    • Ozcelik, H. et al. Long-range PCR and next-generation sequencing of BRCA1 and BRCA2 in breast cancer. J. Mol. Diagn. 14, 467-475 (2012).
    • (2012) J. Mol. Diagn. , vol.14 , pp. 467-475
    • Ozcelik, H.1
  • 9
    • 0033990048 scopus 로고    scopus 로고
    • Primer 3 on the WWW for general users and for biologist programmers
    • Rozen, S.,Skaletsky, H. Primer3 on theWWWfor general users and for biologist programmers. Methods Mol. Biol. 132, 365-386 (2000).
    • (2000) Methods Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 10
    • 84904644113 scopus 로고    scopus 로고
    • Date of Access:01/12/2013
    • Guo, Y., Lyon,G. J.,Wang, K. SeqMule,http://seqmule.usc.edu/.(2013) (Date of Access:01/12/2013).
    • (2013) Seq Mule
    • Guo, Y.1    Lyon, G.J.2    Wang, K.3
  • 11
    • 84864294140 scopus 로고    scopus 로고
    • WANNOVAR: Annotating genetic variants for personal genomes via the web
    • Chang, X. & Wang, K. wANNOVAR: annotating genetic variants for personal genomes via the web. J. Med. Genet. 49, 433-436 (2012).
    • (2012) J. Med. Genet. , vol.49 , pp. 433-436
    • Chang, X.1    Wang, K.2
  • 12
    • 84904695899 scopus 로고    scopus 로고
    • Date of Access:01/12/2013
    • Andrews, S. FastQC ,http://www.bioinformatics.babraham.ac.uk/projects/ fastqc/. (2010) (Date of Access:01/12/2013).
    • (2010) Fast QC
    • Andrews, S.1
  • 14
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 15
    • 84904604740 scopus 로고    scopus 로고
    • Agilent Technologies I Date of Access:01/12/2013
    • Agilent Technologies, I. SureDesign ,https://earray.chem.agilent.com/ suredesign/. (2013) (Date of Access:01/12/2013).
    • (2013) Sure Design
  • 16
    • 84904613641 scopus 로고    scopus 로고
    • Roche Nimble Gen I Date of Access:01/12/2013
    • RocheNimbleGen, I. NimbleGen SeqCap EZ design,http://www.nimblegen.com/ products/seqcap/ez/designs/index.html. (2013) (Date of Access:01/12/2013).
    • (2013) Nimble Gen Seq Cap EZ Design
  • 17
    • 77449121614 scopus 로고    scopus 로고
    • Target-enrichment strategies for next-generation sequencing
    • Mamanova, L. et al. Target-enrichment strategies for next-generation sequencing. Nat. Methods 7, 111-118 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 111-118
    • Mamanova, L.1
  • 18
    • 77956534324 scopus 로고    scopus 로고
    • ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
    • Wang, K., Li, M. & Hakonarson, H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 38, e164 (2010).
    • (2010) Nucleic Acids Res , vol.38
    • Wang, K.1    Li, M.2    Hakonarson, H.3
  • 19
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J. T. et al. Integrative genomics viewer. Nat. Biotechnol. 29, 24-26 (2011).
    • (2011) Nat. Biotechnol. , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 20
    • 84904615607 scopus 로고    scopus 로고
    • Date of Access:14/06/2014
    • Andrews, S. SeqMonk ,http://www.bioinformatics.babraham.ac.uk/projects/ seqmonk/. (2007) (Date of Access:14/06/2014).
    • (2007) Seq Monk
    • Andrews, S.1
  • 21
    • 79952277288 scopus 로고    scopus 로고
    • Long-range PCR with a DNA polymerase fusion
    • Hogrefe, H. H. & Borns, M. C. Long-range PCR with a DNA polymerase fusion. Methods Mol. Biol. 687, 17-23 (2011).
    • (2011) Methods Mol. Biol. , vol.687 , pp. 17-23
    • Hogrefe, H.H.1    Borns, M.C.2
  • 22
    • 84555187724 scopus 로고    scopus 로고
    • Targeted enrichment of genomic DNA regions for nextgeneration sequencing
    • Mertes, F. et al. Targeted enrichment of genomic DNA regions for nextgeneration sequencing. Briefings in Functional Genomics 10, 374-386 (2011).
    • (2011) Briefings in Functional Genomics , vol.10 , pp. 374-386
    • Mertes, F.1
  • 23
    • 84879634155 scopus 로고    scopus 로고
    • Comparison of commercially available target enrichment methods for next-generation sequencing
    • Bodi, K. et al. Comparison of commercially available target enrichment methods for next-generation sequencing. J. Biomol. Tech. 24, 73-86 (2013).
    • (2013) J. Biomol. Tech. , vol.24 , pp. 73-86
    • Bodi, K.1
  • 24
    • 77953565946 scopus 로고    scopus 로고
    • Whole exome capture in solution with 3 Gbp of data
    • Bainbridge, M. N. et al. Whole exome capture in solution with 3 Gbp of data. Genome Biol. 11, R62 (2010).
    • (2010) Genome Biol , vol.11
    • Bainbridge, M.N.1
  • 26
    • 80053132475 scopus 로고    scopus 로고
    • Identification of novel intronic BRCA1 variants of uncertain significance in a Thai hereditary breast cancer family
    • Ratanaphan, A., Panomwan, P., Canyuk, B. ,Maipang, T. Identification of novel intronic BRCA1 variants of uncertain significance in a Thai hereditary breast cancer family. J Genet 90, 327-331 (2011).
    • (2011) J Genet , vol.90 , pp. 327-331
    • Ratanaphan, A.1    Panomwan, P.2    Canyuk, B.3    Maipang, T.4
  • 27
    • 84866391666 scopus 로고    scopus 로고
    • BRCA2 deep intronic mutation causing activation of a cryptic exon: Opening toward a new preventive therapeutic strategy
    • Anczukow, O. et al. BRCA2 deep intronic mutation causing activation of a cryptic exon: opening toward a new preventive therapeutic strategy. Clin. Cancer Res. 18, 4903-4909 (2012).
    • (2012) Clin. Cancer Res. , vol.18 , pp. 4903-4909
    • Anczukow, O.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.