Microarray-based identification of lectins for the purification of human urinary extracellular vesicles directly from urine samples

ChemBioChem

Volumn 15, Issue 11, 2014, Pages 1621-1626

  Echevarria, Juan ^a   Royo, Felix ^b   Pazos, Raquel ^a   Salazar, Lorena ^c   Falcon Perez, Juan Manuel ^b,d   Reichardt, Niels Christian ^a,e  

^a CIC BIOMAGUNE   (Spain)

^b INSTITUTO DE SALUD CARLOS III   (Spain)

^c Osarten Klinikoa ^*  (Spain)

^d BASQUE FOUNDATION FOR SCIENCE   (Spain)

^e BIOMATERIALES Y NANOMEDICINA CIBER BBN   (Spain)

Author keywords

biomarkers; exosomes; glycosylation; microarrays; urine

Indexed keywords

AGGLUTININ; AQUAPORIN 1; AQUAPORIN 2; BAUHINIA PURPUREA LECTIN; CD63 ANTIGEN; CHITIN; CICER ARETINUM LECTIN; DATURA STRAMONIUM LECTIN; DOLICHOS BIFLORUS LECTIN; GLYCAN; GLYCOPHORIN; GLYCOPROTEIN; LACTOSAMINE OLIGOMER; LECTIN; LYCOPERSICON ESCULENTUM LECTIN; MATRIX PROTEIN; N ACETYLGALACTOSAMINE; N ACETYLGLUCOSAMINE; OLIGOMER; PHASEOLUS VULGARIS AGGLUTININ; RICINUS COMMUNIS AGGLUTININ; UNCLASSIFIED DRUG; WHEAT GERM AGGLUTININ; WISTERIA FLORIBUNDA LECTIN; MOLECULAR PROBE;

ARTICLE; BAUHINIA PURPUREA; BINDING AFFINITY; CICER; CICER ARETINUM; DATURA STRAMONIUM; DOLICHOS; DOLICHOS BIFLORUS; ELECTRON MICROSCOPY; EXOSOME; FEMALE; FLOW CYTOMETRY; FLUORESCENCE; HUMAN; LECTIN BINDING; MALE; MEMBRANE VESICLE; MICROARRAY ANALYSIS; NONHUMAN; NORMAL HUMAN; PHASEOLUS VULGARIS; POTATO; PRIORITY JOURNAL; PROTEIN URINE LEVEL; PURIFICATION; RECEPTOR POTENTIAL; RICINUS COMMUNIS; SOLANUM TUBEROSUM LECTIN; TOMATO; ULTRACENTRIFUGATION; URINALYSIS; URINARY EXTRACELLULAR VESICLE; WESTERN BLOTTING; WISTERIA; WISTERIA FLORIBUNDA; ANALYSIS; CHEMISTRY; CYTOLOGY; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR PROBE; PROTEIN MICROARRAY; URINE;

EXOSOMES; HUMANS; LECTINS; MOLECULAR PROBES; PROTEIN ARRAY ANALYSIS; URINE;

EID: 84904695436     PISSN: 14394227     EISSN: 14397633     Source Type: Journal    
DOI: 10.1002/cbic.201402058     Document Type: Article

References (34)

1. T. Pisitkun, R. Johnstone, M. A. Knepper, Mol. Cell. Proteomics 2006, 5, 1760-1771
2. V. Thongboonkerd, Mol. BioSyst. 2008, 4, 810-815.
3. T. Pisitkun, R.-F. Shen, M. A. Knepper, Proc. Natl. Acad. Sci. USA 2004, 101, 13368-13373
4. J. Conde-Vancells, J. M. Falcon-Perez, in Methods in Molecular Biology, Vol. 909: Liver Proteomics, Methods in Molecular Biology (Eds.:, D. Josic, D. C. Hixson,), Humana, Totowa, 2012, pp. 321-340.
5. S. Mathivanan, H. Ji, R. J. Simpson, J. Proteomics 2010, 73, 1907-1920.
6. J. Nilsson, J. Skog, A. Nordstrand, V. Baranov, L. Mincheva-Nilsson, X. O. Breakefield, A. Widmark, Br. J. Cancer 2009, 100, 1603-1607.
7. H. Zhou, T. Pisitkun, A. Aponte, P. S. T. Yuen, J. D. Hoffert, H. Yasuda, X. Hu, L. Chawla, R.-F. Shen, M. A. Knepper, R. A. Star, Kidney Int. 2006, 70, 1847-1857
8. J. L. Welton, S. Khanna, P. J. Giles, P. Brennan, I. A. Brewis, J. Staffurth, M. D. Mason, A. Clayton, Mol. Cell. Proteomics 2010, 9, 1324-1338
9. A. Perez, A. Loizaga, R. Arceo, I. Lacasa, A. Rabade, K. Zorroza, D. Mosen-Ansorena, E. Gonzalez, A. M. Aransay, J. M. Falcon-Perez, M. Unda-Urzaiz, F. Royo, Cancers 2014, 6, 179-192.
10. M. C. Hogan, L. Manganelli, J. R. Woollard, A. I. Masyuk, T. V. Masyuk, R. Tammachote, B. Q. Huang, A. A. Leontovich, T. G. Beito, B. J. Madden, M. C. Charlesworth, V. E. Torres, N. F. LaRusso, P. C. Harris, C. J. Ward, J. Am. Soc. Nephrol. 2009, 20, 278-288
11. J. Adachi, C. Kumar, Y. Zhang, J. V. Olsen, M. Mann, Genome Biol. 2006, 7, R 80.
12. B. S. Batista, W. S. Eng, K. T. Pilobello, K. D. Hendricks-Muñoz, L. K. Mahal, J. Proteome Res. 2011, 10, 4624-4633.
13. J. Q. Gerlach, A. Kruger, S. Gallogly, S. A. Hanley, M. C. Hogan, C. J. Ward, L. Joshi, M. D. Griffin, PLoS One 2013, 8, e 74801.
14. N. Sharon, H. Lis, Glycobiology 2004, 14, 53R-62R.
15. M. Kullolli, W. S. Hancock, M. Hincapie, Anal. Chem. 2010, 82, 115-120.
16. J. Hirabayashi, A. Kuno, H. Tateno, Electrophoresis 2011, 32, 1118-1128
17. G. Gupta, A. Surolia, S. G. Sampathkumar, OMICS 2010, 14, 419-436
18. J. Hirabayashi, M. Yamada, A. Kuno, H. Tateno, Chem. Soc. Rev. 2013, 42, 4443-4458
19. J. P. Ribeiro, L. K. Mahal, Curr. Opin. Chem. Biol. 2013, 17, 827-831.
20. J. Etxebarria, J. Calvo, M. Martin-Lomas, N.-C. Reichardt, ACS Chem. Biol. 2012, 7, 1729-1737.
21. A. M. Marleau, C.-S. Chen, J. A. Joyce, R. H. Tullis, J. Transl. Med. 2012, 10, 134.
22. P.-G. Moon, S. You, J.-E. Lee, D. Hwang, M.-C. Baek, Mass Spectrom. Rev. 2011, 30, 1185-1202
23. H. Zhou, P. S. T. Yuen, T. Pisitkun, P. A. Gonzales, H. Yasuda, J. W. Dear, P. Gross, M. A. Knepper, R. A. Star, Kidney Int. 2006, 69, 1471-1476
24. C. Y. Chen, M. C. Hogan, C. J. Ward, Methods Enzymol. 2013, 524, 225-241.
25. P. Fernández-Llama, S. Khositseth, P. A. Gonzales, R. A. Star, T. Pisitkun, M. A. Knepper, Kidney Int. 2010, 77, 736-742.
26. L. Musante, M. Saraswat, E. Duriez, B. Byrne, A. Ravidà, B. Domon, H. Holthofer, PLoS One 2012, 7, e 37279.
27. D. A. A. Raj, I. Fiume, G. Capasso, G. Pocsfalvi, Kidney Int. 2012, 81, 1263-1272.
28. M. L. Alvarez, M. Khosroheidari, R. Kanchi Ravi, J. K. DiStefano, Kidney Int. 2012, 82, 1024-1032
29. A. Cheruvanky, H. Zhou, T. Pisitkun, J. B. Kopp, M. A. Knepper, P. S. T. Yuen, R. A. Star, Am. J. Physiol. Renal. Physiol. 2007, 292, F 1657 -F 1661.
30. A. K. Allen, G. P. Bolwell, D. S. Brown, C. Sidebottom, A. R. Slabas, Int. J. Biochem. Cell Biol. 1996, 28, 1285-1291
31. H. Kawashima, S. Sueyoshi, H. Li, K. Yamamoto, T. Osawa, Glycoconjugate J. 1990, 7, 323-334.
32. M. S. Nachbar, J. D. Oppenheim, J. O. Thomas, J. Biol. Chem. 1980, 255, 2056-2061.
33. M. Simons, G. Raposo, Curr. Opin. Cell Biol. 2009, 21, 575-581.
34. A. I. Saeed, V. Sharov, J. White, J. Li, W. Liang, N. Bhagabati, J. Braisted, M. Klapa, T. Currier, M. Thiagarajan, A. Sturn, M. Snuffin, A. Rezantsev, D. Popov, A. Ryltsov, E. Kostukovich, I. Borisovsky, Z. Liu, A. Vinsavich, V. Trush, J. Quackenbush, BioTechniques 2003, 34, 374-378.