Alicyclobacillus cellulosilyticus sp. nov., a thermophilic, cellulolytic bacterium isolated from steamed Japanese cedar chips from a lumbermill

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 7, 2014, Pages 2257-2263

  Kusube, Masataka ^a   Sugihara, Asami ^a   Moriwaki, Yoshito ^a   Ueoka, Takahiro ^a   Shimane, Yasuhiro ^b   Minegishi, Hiroaki ^c  

^a WAKAYAMA NATIONAL COLLEGE OF TECHNOLOGY   (Japan)

^b JAPAN AGENCY FOR MARINE EARTH SCIENCE AND TECHNOLOGY   (Japan)

^c TOYO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CARBOXYMETHYLCELLULOSE; CYCLOHEXANE; QUINONE DERIVATIVE; RNA 16S;

ALICYCLOBACILLUS; ALICYCLOBACILLUS ACIDOCALDARIUS; ALICYCLOBACILLUS CELLULOSILYTICUS; ALICYCLOBACILLUS MACROSPORANGIIDUS; ALICYCLOBACILLUS POMORUM; ANAEROBIC GROWTH; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CARBON SOURCE; DNA BASE COMPOSITION; INCUBATION TEMPERATURE; JAPAN; JAPANESE CEDAR; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ALIGNMENT; TAXONOMIC RANK;

ALICYCLOBACILLUS; BACTERIAL TYPING TECHNIQUES; CRYPTOMERIA; DNA, BACTERIAL; FATTY ACIDS; JAPAN; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; VITAMIN K 2; WOOD;

EID: 84904498053     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.061440-0     Document Type: Article

References (34)

1. Albuquerque, L., Rainey, F. A., Chung, A. P., Sunna, A., Nobre, M. F., Grote, R., Antranikian, G. & Da Costa, M. S. (2000). Alicyclobacillus hesperidum sp. nov. and a related genomic species from solfataric soils of São Miguel in the Azores. Int J Syst Evol Microbiol 50, 451-457.
2. Bai, Y., Wang, J., Zhang, Z., Shi, P., Luo, H., Huang, H., Luo, C. & Yao, B. (2010). A novel family 9 b-1,3(4)-glucanase from thermoacidophilic Alicyclobacillus sp. A4 with potential applications in the brewing industry. Appl Microbiol Biotechnol 87, 251-259.
3. Darland, G. & Brock, T. D. (1971). Bacillus acidocaldarius sp. nov., an acidophilic thermophilic spore-forming bacterium. J Gen Microbiol 67, 9-15.
4. Deinhard, G., Blanz, P., Poralla, K. & Altan, E. (1987a). Bacillus acidoterrestris sp. nov., a new thermotolerant acidophile isolated from different soils. Syst Appl Microbiol 10, 47-53.
5. Deinhard, G., Saar, J., Krischke, W. & Poralla, K. (1987b). Bacillus cycloheptanicus sp. nov., a new thermoacidophile containing vcycloheptane fatty acids. Syst Appl Microbiol 10, 68-73.
6. Dufresne, S., Bousquet, J., Boissinot, M. & Guay, R. (1996). Sulfobacillus disulfidooxidans sp. nov., a new acidophilic, disulfideoxidizing, gram-positive, spore-forming bacterium. Int J Syst Bacteriol 46, 1056-1064.
7. Dussalt, H. P. (1955). An improved technique for staining redhalophilic bacteria. Jour Bact 10, 484-485.
8. Glaeser, S. P., Falsen, E., Martin, K. & Kämpfer, P. (2013). Alicyclobacillus consociatus sp. nov., isolated from a human clinical specimen. Int J Syst Evol Microbiol 63, 3623-3627.
9. Goto, K., Matsubara, H., Mochida, K., Matsumura, T., Hara, Y., Niwa, M. & Yamasato, K. (2002a). Alicyclobacillus herbarius sp. nov., a novel bacterium containing v-cycloheptane fatty acids, isolated from herbal tea. Int J Syst Evol Microbiol 52, 109-113.
10. Goto, K., Tanimoto, Y., Tamura, T., Mochida, K., Arai, D., Asahara, M., Suzuki, M., Tanaka, H. & Inagaki, K. (2002b). Identification of thermoacidophilic bacteria and a new Alicyclobacillus genomic species isolated from acidic environments in Japan. Extremophiles 6, 333-340.
11. Goto, K., Mochida, K. M., Asahara, M., Suzuki, M. & Yokota, A. (2002c). Application of the hypervariable region of the 16S rDNA sequence as an index for the rapid identification of species in the genus Alicyclobacillus. J Gen Appl Microbiol 48, 243-250.
12. Goto, K., Mochida, K., Asahara, M., Suzuki, M., Kasai, H. & Yokota, A. (2003). Alicyclobacillus pomorum sp. nov., a novel thermo-acidophilic, endospore-forming bacterium that does not possess v-alicyclic fatty acids, and emended description of the genus Alicyclobacillus. Int J Syst Evol Microbiol 53, 1537-1544.
13. Guo, X., You, X. Y., Liu, L. J., Zhang, J. Y., Liu, S. J. & Jiang, C. Y. (2009). Alicyclobacillus aeris sp. nov., a novel ferrous-and sulfur-oxidizing bacterium isolated from a copper mine. Int J Syst Evol Microbiol 59, 2415-2420.
14. Hudson, J. A., Morgan, H. W. & Daniel, R. M. (1985). A numerical classification of some thermus isolates. Microbiol 132, 531-540.
15. Huelsenbeck, J. P. (1995). The robustness of two phylogenetic methods: four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining. Mol Biol Evol 12, 843-849.
16. Janssen, P. H., Schuhmann, A., Mörschel, E. & Rainey, F. A. (1997). Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil. Appl Environ Microbiol 63, 1382-1388.
17. Karavaiko, G. I., Bogdanova, T. I., Tourova, T. P., Kondrat'eva, T. F., Tsaplina, I. A., Egorova, M. A., Krasil'nikova, E. N. & Zakharchuk, L. M. (2005). Reclassification of 'Sulfobacillus thermosulfidooxidans subsp. thermotolerans' strain K1 as Alicyclobacillus tolerans sp. nov. and Sulfobacillus disulfidooxidans Dufresne et al. 1996 as Alicyclobacillus disulfidooxidans comb. nov., and emended description of the genus Alicyclobacillus. Int J Syst Evol Microbiol 55, 941-947.
18. Katayama-Fujimura, Y., Komatsu, Y., Kuraishi, H. & Kaneko, T. (1984). Estimation of DNA base composition by high performance liquid chromatography of its nuclease P1 hydrolysate. Agric Biol Chem 48, 3169-3172.
19. Koga, Y. (2012). Thermal adaptation of the archaeal and bacterial lipid membranes. Archaea 2012, 789652.
20. Komagata, K. & Suzuki, K. (1987). Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19, 161-206.
21. Kuhner, M. K. & Felsenstein, J. (1994). A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol Biol Evol 11, 459-468.
22. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic acid techniques in bacterial systematis, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
23. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A. & other authors (2007). CLUSTAL W and CLUSTAL_X version 2.0. Bioinformatics 23, 2947-2948.
24. Matsubara, H., Goto, K., Matsumura, T., Mochida, K., Iwaki, M., Niwa, M. & Yamasato, K. (2002). Alicyclobacillus acidiphilus sp. nov., a novel thermo-acidophilic, omega-alicyclic fatty acid-containing bacterium isolated from acidic beverages. Int J Syst Evol Microbiol 52, 1681-1685.
25. Morana, A., Esposito, A., Maurelli, L., Ruggiero, G., Ionata, E., Rossi, M. & Cara, F. L. (2008). A novel thermoacidophilic cellulase from Alicyclobacillus acidocaldarius. Protein Pept Lett 15, 1017-1021.
26. Nicolaus, B., Improta, R., Manca, C. M., Lama, L., Esposito, E. & Gambacorta, A. (1998). Alicyclobacilli from an unexplored geothermal soil in Antarctica: Mount Rittmann. Polar Biol 19, 133-141.
27. Oshima, M. & Ariga, T. (1975). v-cyclohexyl fatty acids in acidophilic thermophilic bacteria. Jour Biol Chem 250, 6963-6966.
28. Simbahan, J., Drijber, R. & Blum, P. (2004). Alicyclobacillus vulcanalis sp. nov., a thermophilic, acidophilic bacterium isolated from Coso Hot Springs, California, USA. Int J Syst Evol Microbiol 54, 1703-1707.
29. Smibert, R. M. & Krieg, N. R. (1981). General characterization. In Methods for General and Molecular Bacteriology, pp. 409-443. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, W. A. Nester, N. R. Wood, R. N. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology.
30. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-655. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & R. N. Krieg. Washington, DC: American Society for Microbiology.
31. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
32. Tamaoka, J. (1986). Analysis of bacterial menaquinone mixtures by reverse-phase high-performance liquid chromatography. Methods Enzymol 123, 251-256.
33. Tsuruoka, N., Isono, Y., Shida, O., Hemmi, H., Nakayama, T. & Nishino, T. (2003). Alicyclobacillus sendaiensis sp. nov., a novel acidophilic, slightly thermophilic species isolated from soil in Sendai, Japan. Int J Syst Evol Microbiol 53, 1081-1084.
34. Wisotzkey, J. D., Jurtshuk, P., Jr, Fox, G. E., Deinhard, G. & Poralla, K. (1992). Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov. Int J Syst Bacteriol 42, 263-269.