Alicyclobacillus aeris sp. nov., a novel ferrous-and sulfur-oxidizing bacterium isolated from a copper mine

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 10, 2009, Pages 2415-2420

  Guo, Xu ^a   You, Xiao Yan ^a   Liu, Li Jun ^a   Zhang, Jia Yue ^a   Liu, Shung Jiang ^a   Jiang, Cheng Ying ^a  

^a INSTITUTE OF MICROBIOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; GLYCINE; MENAQUINONE; RNA 16S;

ALICYCLOBACILLUS; ALICYCLOBACILLUS AERIS; ARTICLE; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIUM ISOLATE; CONTROLLED STUDY; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; SULFUR OXIDIZING BACTERIUM;

BACTERIAL TYPING TECHNIQUES; CHINA; COPPER; FERROUS COMPOUNDS; GRAM-POSITIVE ENDOSPORE-FORMING RODS; MINING; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PHYLOGENY; SOIL MICROBIOLOGY; SULFUR;

ALICYCLOBACILLUS; BACTERIA (MICROORGANISMS); POSIBACTERIA;

EID: 70350719169     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.008870-0     Document Type: Article

References (29)

1. Albuquerque, L., Rainey, F. A., Chung, A. P., Sunna, A., Nobre, M. F., Grote, R., Antranikian, G. & Da Costa, M. S. (2000). Alicyclobacillus hesperidum sp. nov. and a related genomic species from solfataric soils of São Miguel in the Azores. Int J Syst Evol Microbiol 50, 451-457.
2. Claus, D. & Berkeley, R. C. W. (1986). Genus Bacillus Cohn 1872. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1105-1140. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
3. Deinhard, G., Blanz, P., Poralla, K. & Altan, E. (1987a). Bacillus acidoterrestris sp. nov., a new thermotolerant acidophile isolated from different soils. Syst Appl Microbiol 10, 47-53.
4. Deinhard, G., Saar, J., Krischke, W. & Poralla, K. (1987b). Bacillus cycloheptanicus sp. nov., a new thermoacidophile containing ω-cycloheptane fatty acids. Syst Appl Microbiol 10, 68-73.
5. Dong, X. & Cai, M. (2001). Determinative Manual for Routine Bacteriology (English translation). Beijing: Academic Press.
6. Dufresne, S., Bousquet, J., Boissinot, M. & Guay, R. (1996). Sulfobacillus disulfidooxidans sp. nov., a new acidophilic, disulfideoxidizing, Gram-positive, spore-forming bacterium. Int J Syst Bacteriol 46, 1056-1064.
7. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
8. Goto, K., Mochida, K. M., Asahara, M., Suzuki, M. & Yokota, A. (2002). Application of the hypervariable region of the 16S rDNA sequence as an index for the rapid identification of species in the genus Alicyclobacillus. J Gen Appl Microbiol 48, 243-250.
9. Goto, K., Mochida, K., Asahara, M., Suzuki, M., Kasai, H. & Yokota, K. (2003). Alicyclobacillus pomorum sp. nov., a novel thermo-acidophilic, endospore-forming bacterium that does not possess ω-alicyclic fatty acids, and emended description of the genus Alicyclobacillus. Int J Syst Evol Microbiol 53, 1537-1544.
10. Goto, K., Mochida, K., Kato, Y., Asahara, M., Ozawa, C., Kasai, H. & Yokota, A. (2006). Diversity of Alicyclobacillus isolated from fruit juices and their raw materials, and emended description of Alicyclobacillus acidocaldarius. Microbiol Cult Collect 22, 1-14.
11. Goto, K., Mochida, K., Kato, Y., Asahara, M., Fujita, R., An, S.-Y., Kasai, H. & Yokota, A. (2007). Proposal of six species of moderately thermophilic, acidophilic, endospore-forming bacteria: Alicyclobacillus contaminans sp. nov., Alicyclobacillus fastidiosus sp. nov., Alicyclobacillus kakegawensis sp. nov., Alicyclobacillus macrosporangiidus sp. nov., Alicyclobacillus sacchari sp. nov. and Alicyclobacillus shizuokensis sp. nov. Int J Syst Evol Microbiol 57, 1276-1285.
12. Hippchen, B., Röll, A. & Poralla, K. (1981). Occurrence in soil of thermo-acidophilic bacilli possessing ω-cyclohexane fatty acids and hopanoids. Arch Microbiol 129, 53-55.
13. Hiraishi, A., Inagaki, K., Tanimoto, Y., Iwasaki, M., Kishimoto, N. & Tanaka, H. (1997). Phylogenetic characterization of a new thermoacidophilic bacterium isolated from hot springs in Japan. J Gen Appl Microbiol 43, 295-304.
14. Imperio, T., Viti, C. & Marri, L. (2008). Alicyclobacillus pohliae sp. nov., a thermophilic, endospore-forming bacterium isolated from geothermal soil of the north-west slope of Mount Melbourne (Antarctica). Int J Syst Evol Microbiol 58, 221-225.
15. Jiang, C.-Y., Liu, Y., Liu, Y.-Y., You, X.-Y., Guo, X. & Liu, S.-J. (2008). Alicyclobacillus ferrooxydans sp. nov., a ferrous-oxidizing bacterium from solfataric soil. Int J Syst Evol Microbiol 58, 2898-2903.
16. Johnson, D. B. & Hallberg, K. B. (2007). Techniques for detecting and identifying acidophilic mineral-oxidizing microorganisms. In Biomining, pp. 237-262. Edited by D. E. Rawlings & D. B. Johnson. Heidelberg: Springer-Verlag.
17. Karavaiko, G. I., Bogdanova, T. I., Tourova, T. P., Kondrat'eva, T. F., Tsaplina, I. A., Egorova, M. A., Krasil'nikova, E. N. & Zakharchuk, L. M. (2005). Reclassification of 'Sulfobacillus thermosulfidooxidans subsp. thermotolerans' strain K1 as Alicyclobacillus tolerans sp. nov. and Sulfobacillus disulfidooxidans Dufresne et al. 1996 as Alicyclobacillus disulfidooxidans comb. nov., and emended description of the genus Alicyclobacillus. Int J Syst Evol Microbiol 55, 941-947.
18. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
19. Kovalenko, E. V. & Malakhova, P. T. (1983). The spore-forming iron-oxidizing bacterium Sulfobacillus thermosulfidooxidans. Mikrobiologiia 52, 962-966 (in Russian).
20. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
21. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
22. Nicolaus, B., Improta, R., Manca, M. C., Lama, L., Esposito, E. & Gambacorta, A. (1998). Alicyclobacilli from an unexplored geothermal soil in Antarctica: Mount Rittmann. Polar Biol 19, 133-141.
23. Norris, P. R., Clark, D. A., Owen, J. P. & Waterhouse, S. (1996). Characteristics of Sulfobacillus acidophilus sp. nov. and other moderately thermophilic mineral-sulphide-oxidizing bacteria. Microbiology 142, 775-783.
24. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
25. Simbahan, J., Drijber, R. & Blum, P. (2004). Alicyclobacillus vulcanalis sp. nov., a thermophilic, acidophilic bacterium isolated from Coso Hot Springs, California, USA. Int J Syst Evol Microbiol 54, 1703-1707.
26. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
27. Tsuruoka, N., Isono, Y., Shida, O., Hemmi, H., Nakayama, T. & Nishino, T. (2003). Alicyclobacillus sendaiensis sp. nov., a novel acidophilic, slightly thermophilic species isolated from soil in Sendai, Japan. Int J Syst Evol Microbiol 53, 1081-1084.
28. Wakeman, K., Auvinen, H. & Johnson, D. B. (2008). Microbiological and geochemical dynamics in simulated-heap leaching of a polymetallic sulfide ore. Biotechnol Bioeng, doi:10.1002/bit.21951
29. Wisotzkey, J. D., Jurtshuk, P., Jr, Fox, G. E., Deinhard, G. & Poralla, K. (1992). Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov. Int J Syst Bacteriol 42, 263-269.