-
1
-
-
84904514448
-
System wide analyses have underestimated protein abundances and the importance of transcription in mammals
-
Li, J. J., Bickel, P. J., and Biggin, M. D. (2014) System wide analyses have underestimated protein abundances and the importance of transcription in mammals. Peer J. 27, e270
-
(2014)
Peer J.
, vol.27
-
-
Li, J.J.1
Bickel, P.J.2
Biggin, M.D.3
-
2
-
-
48249103199
-
Structure of eukaryotic RNA polymerases
-
Cramer, P., Armache, K. J., Baumli, S., Benkert, S., Brueckner, F., Buchen, C., Damsma, G. E., Dengl, S., Geiger, S. R., Jasiak, A. J., Jawhari, A., Jennebach, S., Kamenski, T., Kettenberger, H., Kuhn, C. D., Lehmann, E., Leike, K., Sydow, J. F., and Vannini, A. (2008) Structure of eukaryotic RNA polymerases. Annu. Rev. Biophys. 37, 337-352
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 337-352
-
-
Cramer, P.1
Armache, K.J.2
Baumli, S.3
Benkert, S.4
Brueckner, F.5
Buchen, C.6
Damsma, G.E.7
Dengl, S.8
Geiger, S.R.9
Jasiak, A.J.10
Jawhari, A.11
Jennebach, S.12
Kamenski, T.13
Kettenberger, H.14
Kuhn, C.D.15
Lehmann, E.16
Leike, K.17
Sydow, J.F.18
Vannini, A.19
-
4
-
-
84855829663
-
RNA polymerase III transcription control elements: Themes and variations
-
Orioli, A., Pascali, C., Pagano, A., Teichmann, M., and Dieci, G. (2012) RNA polymerase III transcription control elements: themes and variations. Gene 493, 185-194
-
(2012)
Gene
, vol.493
, pp. 185-194
-
-
Orioli, A.1
Pascali, C.2
Pagano, A.3
Teichmann, M.4
Dieci, G.5
-
5
-
-
0003880161
-
-
Garland Science, New York
-
Alberts, B., J. A., Lewis, J., Raff, M., Roberts, K., and Walter, P. (2002) Molecular Biology of the Cell, 4th Ed., Garland Science, New York
-
(2002)
Molecular Biology of the Cell, 4th Ed.
-
-
Alberts, B.J.A.1
Lewis, J.2
Raff, M.3
Roberts, K.4
Walter, P.5
-
6
-
-
0142137250
-
The eukaryotic transcriptional machinery: Complexities and mechanisms unforeseen
-
Roeder, R. G. (2003) The eukaryotic transcriptional machinery: complexities and mechanisms unforeseen. Nat. Med. 9, 1239-1244
-
(2003)
Nat. Med.
, vol.9
, pp. 1239-1244
-
-
Roeder, R.G.1
-
7
-
-
84875261248
-
TFIIB-related factors in RNA polymerase I transcription
-
Knutson, B. A., and Hahn, S. (2013) TFIIB-related factors in RNA polymerase I transcription. Biochim. Biophys. Acta 1829, 265-273
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 265-273
-
-
Knutson, B.A.1
Hahn, S.2
-
8
-
-
84857423235
-
Conservation between the RNA polymerase I, II, and III transcription initiation machineries
-
Vannini, A., and Cramer, P. (2012) Conservation between the RNA polymerase I, II, and III transcription initiation machineries. Mol. Cell 45, 439-446
-
(2012)
Mol. Cell
, vol.45
, pp. 439-446
-
-
Vannini, A.1
Cramer, P.2
-
9
-
-
84875843747
-
Basic mechanisms in RNA polymerase I transcription of the ribosomal RNA genes
-
Goodfellow, S. J., and Zomerdijk, J. C. (2013) Basic mechanisms in RNA polymerase I transcription of the ribosomal RNA genes. Subcell. Biochem. 61, 211-236
-
(2013)
Subcell. Biochem.
, vol.61
, pp. 211-236
-
-
Goodfellow, S.J.1
Zomerdijk, J.C.2
-
10
-
-
0021943255
-
Eukaryotic RNA polymerases
-
Sentenac, A. (1985) Eukaryotic RNA polymerases. CRC Crit. Rev. Biochem. 18, 31-90
-
(1985)
CRC Crit. Rev. Biochem.
, vol.18
, pp. 31-90
-
-
Sentenac, A.1
-
11
-
-
84886948058
-
RNA polymerase I structure and transcription regulation
-
Engel, C., Sainsbury, S., Cheung, A. C., Kostrewa, D., and Cramer, P. (2013) RNA polymerase I structure and transcription regulation. Nature 502, 650-655
-
(2013)
Nature
, vol.502
, pp. 650-655
-
-
Engel, C.1
Sainsbury, S.2
Cheung, A.C.3
Kostrewa, D.4
Cramer, P.5
-
12
-
-
0030013203
-
Biochemistry and structural biology of transcription factor IID (TFIID)
-
Burley, S. K., and Roeder, R. G. (1996) Biochemistry and structural biology of transcription factor IID (TFIID). Annu. Rev. Biochem. 65, 769-799 (Pubitemid 26250625)
-
(1996)
Annual Review of Biochemistry
, vol.65
, pp. 769-799
-
-
Burley, S.K.1
Roeder, R.G.2
-
13
-
-
0026531863
-
The TATA-binding protein and associated factors are integral components of the RNA polymerase I transcription factor, SL1
-
Comai, L., Tanese, N., and Tjian, R. (1992) The TATA-binding protein and associated factors are integral components of the RNA polymerase I transcription factor, SL1. Cell 68, 965-976
-
(1992)
Cell
, vol.68
, pp. 965-976
-
-
Comai, L.1
Tanese, N.2
Tjian, R.3
-
14
-
-
0026465666
-
The role of the TATA-binding protein in the assembly and function of the multisubunit yeast RNA polymerase III transcription factor, TFIIIB
-
Kassavetis, G. A., Joazeiro, C. A., Pisano, M., Geiduschek, E. P., Colbert, T., Hahn, S., and Blanco, J. A. (1992) The role of the TATA-binding protein in the assembly and function of the multisubunit yeast RNA polymerase III transcription factor, TFIIIB. Cell 71, 1055-1064
-
(1992)
Cell
, vol.71
, pp. 1055-1064
-
-
Kassavetis, G.A.1
Joazeiro, C.A.2
Pisano, M.3
Geiduschek, E.P.4
Colbert, T.5
Hahn, S.6
Blanco, J.A.7
-
15
-
-
0027268306
-
TBP, a universal eukaryotic transcription factor?
-
Hernandez, N. (1993) TBP, a universal eukaryotic transcription factor? Genes Dev. 7, 1291-1308
-
(1993)
Genes Dev.
, vol.7
, pp. 1291-1308
-
-
Hernandez, N.1
-
16
-
-
0035026270
-
Events during initiation of Archaeal transcription: Open complex formation and DNA-protein interactions
-
DOI 10.1128/JB.183.10.3025-3031.2001
-
Hausner, W., and Thomm, M. (2001) Events during initiation of archaeal transcription: open complex formation and DNA-protein interactions. J. Bacteriol. 183, 3025-3031 (Pubitemid 32433518)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.10
, pp. 3025-3031
-
-
Hausner, W.1
Thomm, M.2
-
17
-
-
0028361219
-
The TATA-binding protein: A general transcription factor in eukaryotes and archaebacteria
-
Rowlands, T., Baumann, P., and Jackson, S. P. (1994) The TATA-binding protein: a general transcription factor in eukaryotes and archaebacteria. Science 264, 1326-1329 (Pubitemid 24219083)
-
(1994)
Science
, vol.264
, Issue.5163
, pp. 1326-1329
-
-
Rowlands, T.1
Baumann, P.2
Jackson, S.P.3
-
18
-
-
0026559072
-
TATA-binding protein is a classless factor
-
Sharp, P. A. (1992) TATA-binding protein is a classless factor. Cell 68, 819-821
-
(1992)
Cell
, vol.68
, pp. 819-821
-
-
Sharp, P.A.1
-
19
-
-
0027168947
-
Identification of a minimal set of proteins that is sufficient for accurate initiation of transcription by RNA polymerase II
-
Tyree, C. M., George, C. P., Lira-DeVito, L. M., Wampler, S. L., Dahmus, M. E., Zawel, L., and Kadonaga, J. T. (1993) Identification of a minimal set of proteins that is sufficient for accurate initiation of transcription byRNA polymerase II. Genes Dev. 7, 1254-1265 (Pubitemid 23207415)
-
(1993)
Genes and Development
, vol.7
, Issue.7 A
, pp. 1254-1265
-
-
Tyree, C.M.1
George, C.P.2
Lira-De, V.L.M.3
Wampler, S.L.4
Dahmus, M.E.5
Zawel, L.6
Kadonaga, J.T.7
-
20
-
-
84884543020
-
Differential utilization of TATA box-binding protein (TBP) and TBP-related factor 1 (TRF1) at different classes of RNA polymerase III promoters
-
Verma, N., Hung, K.-H., Kang, J. J., Barakat, N. H., and Stumph, W. E. (2013) Differential utilization of TATA box-binding protein (TBP) and TBP-related factor 1 (TRF1) at different classes of RNA polymerase III promoters. J. Biol. Chem. 288, 27564-27570
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 27564-27570
-
-
Verma, N.1
Hung, K.-H.2
Kang, J.J.3
Barakat, N.H.4
Stumph, W.E.5
-
21
-
-
84858444088
-
Perspectives on the RNA polymerase II core promoter
-
Kadonaga, J. T. (2012) Perspectives on the RNA polymerase II core promoter. Wiley Interdiscip. Rev. Dev. Biol. 1, 40-51
-
(2012)
Wiley Interdiscip. Rev. Dev. Biol.
, vol.1
, pp. 40-51
-
-
Kadonaga, J.T.1
-
22
-
-
44649193565
-
The RNA polymerase II core promoter: The gateway to transcription
-
Juven-Gershon, T., Hsu, J. Y., Theisen, J. W., and Kadonaga, J. T. (2008) The RNA polymerase II core promoter: the gateway to transcription. Curr. Opin. Cell Biol. 20, 253-259
-
(2008)
Curr. Opin. Cell Biol.
, vol.20
, pp. 253-259
-
-
Juven-Gershon, T.1
Hsu, J.Y.2
Theisen, J.W.3
Kadonaga, J.T.4
-
23
-
-
0037108150
-
Recruitment of RNA polymerase III to its target promoters
-
Schramm, L., and Hernandez, N. (2002) Recruitment of RNA polymerase III to its target promoters. Genes Dev. 16, 2593-2620
-
(2002)
Genes Dev.
, vol.16
, pp. 2593-2620
-
-
Schramm, L.1
Hernandez, N.2
-
24
-
-
84870671983
-
Genomic study of RNA polymerase II and III SNAPc-bound promoters reveals a gene transcribed by both enzymes and a broad use of common activators
-
James Faresse, N., Canella, D., Praz, V., Michaud, J., Romascano, D., and Hernandez, N. (2012) Genomic study of RNA polymerase II and III SNAPc-bound promoters reveals a gene transcribed by both enzymes and a broad use of common activators. PLoS Genet. 8, e1003028-e1003028
-
(2012)
PLoS Genet.
, vol.8
-
-
James Faresse, N.1
Canella, D.2
Praz, V.3
Michaud, J.4
Romascano, D.5
Hernandez, N.6
-
25
-
-
0024308989
-
A 7 bp mutation converts a human RNA polymerase II snRNA promoter into an RNA polymerase III promoter
-
DOI 10.1016/0092-8674(89)90402-9
-
Lobo, S. M., and Hernandez, N. (1989) A 7 bp mutation converts a human RNA polymerase II snRNA promoter into an RNA polymerase III promoter. Cell 58, 55-67 (Pubitemid 19180079)
-
(1989)
Cell
, vol.58
, Issue.1
, pp. 55-67
-
-
Lobo, S.M.1
Hernandez, N.2
-
26
-
-
0029068497
-
RNA polymerase II/III transcription specificity determined by TATA box orientation
-
Wang, Y., and Stumph, W. E. (1995) RNA polymerase II/III transcription specificity determined by TATA box orientation. Proc. Natl. Acad. Sci. U.S.A. 92, 8606-8610
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 8606-8610
-
-
Wang, Y.1
Stumph, W.E.2
-
27
-
-
0026508883
-
TATA box-mediated polymerase III transcription in vitro
-
Mitchell, M. T., Hobson, G. M., and Benfield, P. A. (1992) TATA box-mediated polymerase III transcription in vitro. J. Biol. Chem. 267, 1995-2005
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 1995-2005
-
-
Mitchell, M.T.1
Hobson, G.M.2
Benfield, P.A.3
-
28
-
-
0032553335
-
hTFIIIB-beta stably binds to pol II promoters and recruits RNA polymerase III in a hTFIIIC1 dependent way
-
DOI 10.1006/jmbi.1998.2165
-
Kober, I., Teichmann, M., and Seifart, K. H. (1998) hTFIIIB-beta stably binds to pol II promoters and recruits RNA polymerase III in a hTFIIIC1 dependent way. J. Mol. Biol. 284, 7-20 (Pubitemid 28523993)
-
(1998)
Journal of Molecular Biology
, vol.284
, Issue.1
, pp. 7-20
-
-
Kober, I.1
Teichmann, M.2
Seifart, K.H.3
-
29
-
-
0026470733
-
Specific transcription from the adenovirus E2E promoter by RNA polymerase III requires a subpopulation of TFIID
-
Pruzan, R., Chatterjee, P. K., and Flint, S. J. (1992) Specific transcription from the adenovirus E2E promoter by RNA polymerase III requires a subpopulation of TFIID. Nucleic Acids Res. 20, 5705-5712
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 5705-5712
-
-
Pruzan, R.1
Chatterjee, P.K.2
Flint, S.J.3
-
30
-
-
0034081817
-
The downstream promoter element DPE appears to be as widely used as the TATA box in Drosophila core promoters
-
DOI 10.1128/MCB.20.13.4754-4764.2000
-
Kutach, A. K., and Kadonaga, J. T. (2000) The downstream promoter element DPE appears to be as widely used as the TATA box in Drosophila core promoters. Mol. Cell. Biol. 20, 4754-4764 (Pubitemid 30396122)
-
(2000)
Molecular and Cellular Biology
, vol.20
, Issue.13
, pp. 4754-4764
-
-
Kutach, A.K.1
Kadonaga, J.T.2
-
31
-
-
84874838646
-
Biochemical analysis of histone deacetylase-independent transcriptional repression by MeCP2
-
Theisen, J. W., Gucwa, J. S., Yusufzai, T., Khuong, M. T., and Kadonaga, J. T. (2013) Biochemical analysis of histone deacetylase-independent transcriptional repression by MeCP2. J. Biol. Chem. 288, 7096-7104
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 7096-7104
-
-
Theisen, J.W.1
Gucwa, J.S.2
Yusufzai, T.3
Khuong, M.T.4
Kadonaga, J.T.5
-
32
-
-
0021100690
-
Accurate transcription initiation byRNApolymerase II in a soluble extract from isolated mammalian nuclei
-
Dignam, J. D., Lebovitz, R. M., and Roeder, R. G. (1983) Accurate transcription initiation byRNApolymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11, 1475-1489
-
(1983)
Nucleic Acids Res.
, vol.11
, pp. 1475-1489
-
-
Dignam, J.D.1
Lebovitz, R.M.2
Roeder, R.G.3
-
33
-
-
0026092947
-
Accurate and efficient RNA polymerase II transcription with a soluble nuclear fraction derived from Drosophila embryos
-
Kamakaka, R. T., Tyree, C. M., and Kadonaga, J. T. (1991) Accurate and efficient RNA polymerase II transcription with a soluble nuclear fraction derived from Drosophila embryos. Proc. Natl. Acad. Sci. U.S.A. 88, 1024-1028 (Pubitemid 21916157)
-
(1991)
Proceedings of the National Academy of Sciences of the United States of America
, vol.88
, Issue.3
, pp. 1024-1028
-
-
Kamakaka, R.T.1
Tyree, C.M.2
Kadonaga, J.T.3
-
34
-
-
0024360443
-
Transcription factor IIIB generates extended DNA interactions in RNA polymerase III transcription complexes on tRNA genes
-
Kassavetis, G. A., Riggs, D. L., Negri, R., Nguyen, L. H., and Geiduschek, E. P. (1989) Transcription factor IIIB generates extended DNA interactions inRNApolymerase III transcription complexes on tRNA genes. Mol. Cell. Biol. 9, 2551-2566 (Pubitemid 19148133)
-
(1989)
Molecular and Cellular Biology
, vol.9
, Issue.6
, pp. 2551-2566
-
-
Kassavetis, G.A.1
Riggs, D.L.2
Negri, R.3
Nguyen, L.H.4
Geiduschek, E.P.5
-
35
-
-
0025103263
-
Tagetitoxin: A new inhibitor of eukaryotic transcription by RNA polymerase III
-
Steinberg, T. H., Mathews, D. E., Durbin, R. D., and Burgess, R. R. (1990) Tagetitoxin: a new inhibitor of eukaryotic transcription by RNA polymerase III. J. Biol. Chem. 265, 499-505
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 499-505
-
-
Steinberg, T.H.1
Mathews, D.E.2
Durbin, R.D.3
Burgess, R.R.4
-
36
-
-
0017140199
-
Transcription in yeast: Alpha-amanitin sensitivity and other properties which distinguish between RNA polymerases I and III
-
Schultz, L. D., and Hall, B. D. (1976) Transcription in yeast: alpha-amanitin sensitivity and other properties which distinguish between RNA polymerases I and III. Proc. Natl. Acad. Sci. U.S.A. 73, 1029-1033
-
(1976)
Proc. Natl. Acad. Sci. U.S.A.
, vol.73
, pp. 1029-1033
-
-
Schultz, L.D.1
Hall, B.D.2
-
37
-
-
0016271044
-
Role of DNA-dependent RNA polymerases II and III in transcription of the adenovirus genome late in productive infection
-
Weinmann, R., Raskas, H. J., and Roeder, R. G. (1974) Role of DNA-dependent RNA polymerases II and III in transcription of the adenovirus genome late in productive infection. Proc. Natl. Acad. Sci. U.S.A. 71, 3426-3439
-
(1974)
Proc. Natl. Acad. Sci. U.S.A.
, vol.71
, pp. 3426-3439
-
-
Weinmann, R.1
Raskas, H.J.2
Roeder, R.G.3
-
38
-
-
0010455690
-
Primer-extension analysis of RNA
-
Krieg, P. A., ed, John Wiley & Sons, Inc., New York
-
George, C. P., and Kadonaga, J. T. (1996) Primer-extension analysis of RNA. in A Laboratory Guide to RNA: Isolation, Analysis, and Synthesis. (Krieg, P. A., ed), pp. 133-139, John Wiley & Sons, Inc., New York
-
(1996)
A Laboratory Guide to RNA: Isolation, Analysis, and Synthesis
, pp. 133-139
-
-
George, C.P.1
Kadonaga, J.T.2
-
39
-
-
0023804820
-
In vitro transcription of the Drosophila engrailed gene
-
Soeller, W. C., Poole, S. J., and Kornberg, T. (1988) In vitro transcription of the Drosophila engrailed gene. Genes Dev. 2, 68-81
-
(1988)
Genes Dev.
, vol.2
, pp. 68-81
-
-
Soeller, W.C.1
Poole, S.J.2
Kornberg, T.3
-
40
-
-
0026644141
-
Functional analysis of Drosophila transcription factor IIB
-
Wampler, S. L., and Kadonaga, J. T. (1992) Functional analysis of Drosophila transcription factor IIB. Genes Dev. 6, 1542-1552
-
(1992)
Genes Dev.
, vol.6
, pp. 1542-1552
-
-
Wampler, S.L.1
Kadonaga, J.T.2
-
41
-
-
0026688325
-
Tagetitoxin inhibition of RNA polymerase III transcription results from enhanced pausing at discrete sites and is template-dependent
-
Steinberg, T. H., and Burgess, R. R. (1992) Tagetitoxin inhibition of RNA polymerase III transcription results from enhanced pausing at discrete sites and is template-dependent. J. Biol. Chem. 267, 20204-20211
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 20204-20211
-
-
Steinberg, T.H.1
Burgess, R.R.2
-
42
-
-
80052253616
-
Widespread occurrence of non-canonical transcription termination by human RNA polymerase III
-
Orioli, A., Pascali, C., Quartararo, J., Diebel, K. W., Praz, V., Romascano, D., Percudani, R., van Dyk, L. F., Hernandez, N., Teichmann, M., and Dieci, G. (2011) Widespread occurrence of non-canonical transcription termination by human RNA polymerase III. Nucleic Acids Res. 39, 5499-5512
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 5499-5512
-
-
Orioli, A.1
Pascali, C.2
Quartararo, J.3
Diebel, K.W.4
Praz, V.5
Romascano, D.6
Percudani, R.7
Van Dyk, L.F.8
Hernandez, N.9
Teichmann, M.10
Dieci, G.11
-
44
-
-
33750345805
-
Rational design of a super core promoter that enhances gene expression
-
DOI 10.1038/nmeth937, PII NMETH937
-
Juven-Gershon, T., Cheng, S., and Kadonaga, J. T. (2006) Rational design of a super core promoter that enhances gene expression. Nat. Methods 3, 917-922 (Pubitemid 44614727)
-
(2006)
Nature Methods
, vol.3
, Issue.11
, pp. 917-922
-
-
Juven-Gershon, T.1
Cheng, S.2
Kadonaga, J.T.3
-
45
-
-
84902313440
-
Contributions of in vitro transcription to the understanding of human RNA polymerase III transcription
-
in press
-
Dumay-Odelot, H., Durrieu-Gaillard, S., El Ayoubi, L., Parrot, C., and Teichmann, M. (2014) Contributions of in vitro transcription to the understanding of human RNA polymerase III transcription. Transcription, in press
-
(2014)
Transcription
-
-
Dumay-Odelot, H.1
Durrieu-Gaillard, S.2
El Ayoubi, L.3
Parrot, C.4
Teichmann, M.5
-
46
-
-
0027980430
-
Transcription of the human T-cell lymphotropic virus type I promoter by an α-amanitin-resistant polymerase
-
Piras, G., Kashanchi, F., Radonovich, M. F., Duvall, J. F., and Brady, J. N. (1994) Transcription of the human T-cell lymphotropic virus type I promoter by an α-amanitin-resistant polymerase. J. Virol. 68, 6170-6179 (Pubitemid 24294866)
-
(1994)
Journal of Virology
, vol.68
, Issue.10
, pp. 6170-6179
-
-
Piras, G.1
Kashanchi, F.2
Radonovich, M.F.3
Duvall, J.F.4
Brady, J.N.5
-
47
-
-
0031052030
-
In vitro transcription of human T-cell leukemia virus type 1 is RNA polymerase II dependent
-
Lenzmeier, B. A., and Nyborg, J. K. (1997) In vitro transcription of human T-cell leukemia virus type 1 is RNA polymerase II dependent. J. Virol. 71, 2577-2580 (Pubitemid 27078650)
-
(1997)
Journal of Virology
, vol.71
, Issue.3
, pp. 2577-2580
-
-
Lenzmeier, B.A.1
Nyborg, J.K.2
-
48
-
-
0015949863
-
Multiple forms of deoxyribonucleic acid-dependent ribonucleic acid polymerase in Xenopus laevis: Isolation and partial characterization
-
Roeder, R. G. (1974) Multiple forms of deoxyribonucleic acid-dependent ribonucleic acid polymerase in Xenopus laevis: isolation and partial characterization. J. Biol. Chem. 249, 241-248
-
(1974)
J. Biol. Chem.
, vol.249
, pp. 241-248
-
-
Roeder, R.G.1
-
49
-
-
0028978670
-
Crystal structure of a TFIIB-TBP-TATA-element ternary complex
-
Nikolov, D. B., Chen, H., Halay, E. D., Usheva, A. A., Hisatake, K., Lee, D. K., Roeder, R. G., and Burley, S. K. (1995) Crystal structure of a TFIIB-TBP-TATA-element ternary complex. Nature 377, 119-128
-
(1995)
Nature
, vol.377
, pp. 119-128
-
-
Nikolov, D.B.1
Chen, H.2
Halay, E.D.3
Usheva, A.A.4
Hisatake, K.5
Lee, D.K.6
Roeder, R.G.7
Burley, S.K.8
-
50
-
-
0030669466
-
The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAF(II)60 of Drosophila
-
Burke, T. W., and Kadonaga, J. T. (1997) The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAF(II)60 of Drosophila. Genes Dev. 11, 3020-3031 (Pubitemid 27508512)
-
(1997)
Genes and Development
, vol.11
, Issue.22
, pp. 3020-3031
-
-
Burke, T.W.1
Kadonaga, J.T.2
-
51
-
-
0029044409
-
Functional mRNA can be generated by RNA polymerase III
-
Gunnery, S., and Mathews, M. B. (1995) Functional mRNA can be generated by RNA polymerase III. Mol. Cell. Biol. 15, 3597-3607
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 3597-3607
-
-
Gunnery, S.1
Mathews, M.B.2
-
52
-
-
0034716931
-
A TRF1: BRF complex directs Drosophila RNA polymerase III transcription
-
Takada, S., Lis, J. T., Zhou, S., and Tjian, R. (2000) A TRF1: BRF complex directs Drosophila RNA polymerase III transcription. Cell 101, 459-469
-
(2000)
Cell
, vol.101
, pp. 459-469
-
-
Takada, S.1
Lis, J.T.2
Zhou, S.3
Tjian, R.4
-
53
-
-
77951943463
-
Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors
-
Oler, A. J., Alla, R. K., Roberts, D. N., Wong, A., Hollenhorst, P. C., Chandler, K. J., Cassiday, P. A., Nelson, C. A., Hagedorn, C. H., Graves, B. J., and Cairns, B. R. (2010) Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors. Nat. Struct. Mol. Biol. 17, 620-628
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 620-628
-
-
Oler, A.J.1
Alla, R.K.2
Roberts, D.N.3
Wong, A.4
Hollenhorst, P.C.5
Chandler, K.J.6
Cassiday, P.A.7
Nelson, C.A.8
Hagedorn, C.H.9
Graves, B.J.10
Cairns, B.R.11
-
54
-
-
77649268269
-
Close association of RNA polymerase II and many transcription factors with Pol III genes
-
Raha, D., Wang, Z., Moqtaderi, Z., Wu, L., Zhong, G., Gerstein, M., Struhl, K., and Snyder, M. (2010) Close association of RNA polymerase II and many transcription factors with Pol III genes. Proc. Natl. Acad. Sci. U.S.A. 107, 3639-3644
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 3639-3644
-
-
Raha, D.1
Wang, Z.2
Moqtaderi, Z.3
Wu, L.4
Zhong, G.5
Gerstein, M.6
Struhl, K.7
Snyder, M.8
-
55
-
-
37349006883
-
Extragenic accumulation of RNA polymerase II enhances transcription by RNA polymerase III
-
DOI 10.1371/journal.pgen.0030212
-
Listerman, I., Bledau, A. S., Grishina, I., and Neugebauer, K. M. (2007) Extragenic accumulation of RNA polymerase II enhances transcription by RNA polymerase III. PLoS Genet. 3, 2268-2277 (Pubitemid 350291586)
-
(2007)
PLoS Genetics
, vol.3
, Issue.11
, pp. 2268-2277
-
-
Listerman, I.1
Bledau, A.S.2
Grishina, I.3
Neugebauer, K.M.4
-
56
-
-
84888057006
-
DNMT1-interacting RNAs block gene-specific DNA methylation
-
Di Ruscio, A., Ebralidze, A. K., Benoukraf, T., Amabile, G., Goff, L. A., Terragni, J., Figueroa, M. E., De Figueiredo Pontes, L. L., Alberich-Jorda, M., Zhang, P., Wu, M., D'Alò, F., Melnick, A., Leone, G., Ebralidze, K. K., Pradhan, S., Rinn, J. L., and Tenen, D. G. (2013) DNMT1-interacting RNAs block gene-specific DNA methylation. Nature 503, 371-376
-
(2013)
Nature
, vol.503
, pp. 371-376
-
-
Di Ruscio, A.1
Ebralidze, A.K.2
Benoukraf, T.3
Amabile, G.4
Goff, L.A.5
Terragni, J.6
Figueroa, M.E.7
De Figueiredo Pontes, L.L.8
Alberich-Jorda, M.9
Zhang, P.10
Wu, M.11
D'Alò, F.12
Melnick, A.13
Leone, G.14
Ebralidze, K.K.15
Pradhan, S.16
Rinn, J.L.17
Tenen, D.G.18
-
57
-
-
0025780870
-
In vitro and in vivo analysis of the c-myc RNA polymerase III promoter
-
Sussman, D. J., Chung, J., and Leder, P. (1991) In vitro and in vivo analysis of the c-myc RNA polymerase III promoter. Nucleic Acids Res. 19, 5045-5052 (Pubitemid 21912895)
-
(1991)
Nucleic Acids Research
, vol.19
, Issue.18
, pp. 5045-5052
-
-
Sussman, D.J.1
Chung, J.2
Leder, P.3
-
58
-
-
0024710863
-
Accurate, TATA box-dependent polymerase III transcription from promoters of the c-myc gene in injected Xenopus oocytes
-
Bentley, D. L., Brown, W. L., and Groudine, M. (1989) Accurate, TATA box-dependent polymerase III transcription from promoters of the c-myc gene in injected Xenopus oocytes. Genes Dev. 3, 1179-1189
-
(1989)
Genes Dev.
, vol.3
, pp. 1179-1189
-
-
Bentley, D.L.1
Brown, W.L.2
Groudine, M.3
-
59
-
-
84863117914
-
Histone density is maintained during transcription mediated by the chromatin remodeler RSC and histone chaperone NAP1 in vitro
-
Kuryan, B. G., Kim, J., Tran, N. N., Lombardo, S. R., Venkatesh, S., Workman, J. L., and Carey, M. (2012) Histone density is maintained during transcription mediated by the chromatin remodeler RSC and histone chaperone NAP1 in vitro. Proc. Natl. Acad. Sci. U.S.A. 109, 1931-1936
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 1931-1936
-
-
Kuryan, B.G.1
Kim, J.2
Tran, N.N.3
Lombardo, S.R.4
Venkatesh, S.5
Workman, J.L.6
Carey, M.7
-
60
-
-
80051748137
-
Identification of a rapidly formed nonnucleosomal histone-DNA intermediate that is converted into chromatin by ACF
-
Torigoe, S. E., Urwin, D. L., Ishii, H., Smith, D. E., and Kadonaga, J. T. (2011) Identification of a rapidly formed nonnucleosomal histone-DNA intermediate that is converted into chromatin by ACF. Mol. Cell 43, 638-648
-
(2011)
Mol. Cell
, vol.43
, pp. 638-648
-
-
Torigoe, S.E.1
Urwin, D.L.2
Ishii, H.3
Smith, D.E.4
Kadonaga, J.T.5
-
61
-
-
84866114872
-
Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange
-
Smolle, M., Venkatesh, S., Gogol, M. M., Li, H., Zhang, Y., Florens, L., Washburn, M. P., and Workman, J. L. (2012) Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange. Nat. Struct. Mol. Biol. 19, 884-892
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 884-892
-
-
Smolle, M.1
Venkatesh, S.2
Gogol, M.M.3
Li, H.4
Zhang, Y.5
Florens, L.6
Washburn, M.P.7
Workman, J.L.8
-
62
-
-
27744577727
-
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
-
DOI 10.1016/j.cell.2005.10.023, PII S0092867405011566
-
Carrozza, M. J., Li, B., Florens, L., Suganuma, T., Swanson, S. K., Lee, K. K., Shia, W. J., Anderson, S., Yates, J., Washburn, M. P., and Workman, J. L. (2005) Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 123, 581-592 (Pubitemid 41608462)
-
(2005)
Cell
, vol.123
, Issue.4
, pp. 581-592
-
-
Carrozza, M.J.1
Li, B.2
Florens, L.3
Suganuma, T.4
Swanson, S.K.5
Lee, K.K.6
Shia, W.-J.7
Anderson, S.8
Yates, J.9
Washburn, M.P.10
Workman, J.L.11
|