Functional analysis of histone deacetylase and its role in stress response, drug resistance and solid-state cultivation in Aspergillus oryzae

Journal of Bioscience and Bioengineering

Volumn 118, Issue 2, 2014, Pages 172-176

  Kawauchi, Moriyuki ^a,b   Iwashita, Kazuhiro ^a,b  

^a HIROSHIMA UNIVERSITY   (Japan)

^b NATIONAL RESEARCH INSTITUTE OF BREWING   (Japan)

Author keywords

Aspergillus oryzae; Drug resistance; Histone deacetylase; Rice koji; Stress response

Indexed keywords

METABOLISM;

ASPERGILLUS ORYZAE; DRUG RESISTANCE; HISTONE DEACETYLASES; RICE-KOJI; STRESS RESPONSE;

ASPERGILLUS;

AMYLASE; BREFELDIN A; CAMPTOTHECIN; CONGO RED; DITHIOTHREITOL; HDAA PROTEIN; HDAB PROTEIN; HDAD PROTEIN; HISTONE DEACETYLASE; HST4 PROTEIN; HYDROXYUREA; MESYLIC ACID METHYL ESTER; MICAFUNGIN; NOCODAZOLE; TUNICAMYCIN; UNCLASSIFIED DRUG; ANTIFUNGAL AGENT; CULTURE MEDIUM; FUNGAL PROTEIN;

ADAPTATION; ANTIFUNGAL RESISTANCE; ARTICLE; ASPERGILLUS ORYZAE; CHROMATIN STRUCTURE; CONTROLLED STUDY; ENVIRONMENTAL EXPOSURE; ENZYME ANALYSIS; ENZYME SYNTHESIS; FERMENTATION MEDIUM; FUNGAL CELL CULTURE; FUNGAL CELL WALL; LIQUID CULTURE; NONHUMAN; OSMOTIC STRESS; PHENOTYPE; PLATE COUNT; SOLID STATE FERMENTATION; CULTURE MEDIUM; CULTURE TECHNIQUE; DRUG EFFECTS; ENZYMOLOGY; FERMENTATION; MYCELIUM; PHYSIOLOGICAL STRESS; PHYSIOLOGY;

ASPERGILLUS ORYZAE; EUKARYOTA; FUNGI;

ADAPTATION, PHYSIOLOGICAL; ANTIFUNGAL AGENTS; ASPERGILLUS ORYZAE; CULTURE MEDIA; CULTURE TECHNIQUES; DRUG RESISTANCE, FUNGAL; FERMENTATION; FUNGAL PROTEINS; HISTONE DEACETYLASES; MYCELIUM; STRESS, PHYSIOLOGICAL;

EID: 84904395623     PISSN: 13891723     EISSN: 13474421     Source Type: Journal    
DOI: 10.1016/j.jbiosc.2014.02.004     Document Type: Article

References (34)

1. Cairns B.R. The logic of chromatin architecture and remodelling at promoters. Nature 2009, 461:193-198.
2. Shahbazian M.D., Grunstein M. Functions of site-specific histone acetylation and deacetylation. Annu. Rev. Biochem 2007, 76:75-100.
3. Nishida H. Evolutionary conservation levels of subunits of histone-modifying protein complexes in fungi. Comp. Funct. Genomics 2009, 379317.
4. Frye R.A. Phylogenetic classification of prokaryotic and eukaryotic Sir2-like proteins. Biochem. Biophys. Res. Commun. 2000, 273:793-798.
5. Gregoretti I., Lee Y.-M., Goodson H.V. Molecular evolution of the histone deacetylase family: functional implications of phylogenetic analysis. J.Mol. Biol. 2004, 338:17-31.
6. Yang X.-J., Seto E. The Rpd3/Hda1 family of lysine deacetylases: from bacteria and yeast to mice and men. Nat. Rev. Mol. Cell Biol. 2008, 9:206-218.
7. Iwashita K. Recent studies of protein secretion by filamentous fungi. J.Biosci. Bioeng. 2002, 94:530-535.
8. Hoffmeister D., Keller N.P. Natural products of filamentous fungi: enzymes, genes, and their regulation. Nat. Prod. Rep. 2007, 24:393-416.
9. Raffaele S., Kamoun S. Genome evolution in filamentous plant pathogens: why bigger can be better. Nat. Rev. Microbiol. 2012, 10:417-430.
10. Pagiotti R., Angelini P., Rubini A., Tirillini B., Granetti B., Venanzoni R. Identification and characterisation of human pathogenic filamentous fungi and susceptibility to Thymus schimperi essential oil. Mycoses 2011, 54:e364-e376.
11. Gacek A., Strauss J. The chromatin code of fungal secondary metabolite gene clusters. Appl. Microbiol. Biotechnol. 2012, 95:1389-1404.
12. Ding S.-L., Liu W., Iliuk A., Ribot C., Vallet J., Tao A., Wang Y., Lebrun M.-H., Xu J.-R. The Tig1 histone deacetylase complex regulates infectious growth in the rice blast fungus Magnaporthe oryzae. Plant Cell 2010, 22:2495-2508.
13. Li Y., Wang C., Liu W., Wang G., Kang Z., Kistler H.C., Xu J.-R. The HDF1 histone deacetylase gene is important for conidiation, sexual reproduction, and pathogenesis in Fusarium graminearum. Mol. Plant Microbe Interact. 2010, 24:487-496.
14. Tribus M., Bauer I., Galehr J., Rieser G., Trojer P., Brosch G., Loidl P., Haas H., Graessle S. Anovel motif in fungal class 1 histone deacetylases is essential for growth and development of Aspergillus. Mol. Biol. Cell 2010, 21:345-353.
15. Tribus M., Galehr J., Trojer P., Brosch G., Loidl P., Marx F., Haas H., Graessle S. HdaA, a major class 2 histone deacetylase of Aspergillus nidulans, affects growth under conditions of oxidative stress. Eukaryot. Cell 2005, 4:1736-1745.
16. Shimizu M., Masuo S., Fujita Y., Doi Y., Kamimura Y., Takaya N. Hydrolase controls cellular NAD, sirtuin, and secondary metabolism. Mol. Cell. Biol. 2012, 32:3743-3755.
17. Machida M., Yamada O., Gomi K. Genomics of Aspergillus oryzae: learning from the history of koji mold and exploration of its future. DNA Res. 2008, 15:173-183.
18. Christensen T., Woeldike H., Boel E., Mortensen S.B., Hjortshoej K., Thim L., Hansen M.T. High level expression of recombinant genes in Aspergillus oryzae. Nat. Biotechnol. 1988, 6:1419-1422.
19. Imamura K., Tsuyama Y., Hirata T., Shiraishi S., Sakamoto K., Yamada O., Akita O., Shimoi H. Identification of a gene involved in the synthesis of a dipeptidyl peptidase IV inhibitor in Aspergillus oryzae. Appl. Environ. Microbiol. 2012, 78:6996-7002.
20. Terabayashi Y., Sano M., Yamane N., Marui J., Tamano K., Sagara J., Dohmoto M., Oda K., Ohshima E., Tachibana K., other 4 authors Identification and characterization of genes responsible for biosynthesis of kojic acid, an industrially important compound from Aspergillus oryzae. Fungal Genet. Biol. 2010, 47:953-961.
21. Kawauchi M., Nishiura M., Iwashita K. Fungus-specific sirtuin HstD coordinates secondary metabolism and development through control of LaeA. Eukaryot. Cell 2013, 12:1087-1096.
22. Iemura Y., Yamada T., Takahashi T., Furukawa K., Hara S. Properties of the peptides liberated from rice protein in Sokujo-moto. J.Biosci. Bioeng. 1999, 88:276-280.
23. Free S.J. Chapter two - fungal cell wall organization and biosynthesis. Advances in genetics 2013, vol. 81:33-82. Academic Press, Waltham, MA.
24. Huertas D., Sendra R., Muñoz P. Chromatin dynamics coupled to DNA repair. Epigenetics 2009, 4:31-42.
25. Kitamoto K. Molecular biology of the Koji molds. Adv. Appl. Microbiol. 2002, 51:129-153.
26. Arima K., Uozumi T. Anew method for estimation of mycelial weight in koji. Agric. Biol. Chem. 1967, 31:119-123.
27. Horio Y., Hayashi T., Kuno A., Kunimoto R. Cellular and molecular effects of sirtuins in health and disease. Clin. Sci. (Lond.) 2011, 121:191-203.
28. Brosch G., Loidl P., Graessle S. Histone modifications and chromatin dynamics: a focus on filamentous fungi. FEMS Microbiol. Rev. 2008, 32:409-439.
29. Biesebeke R., Ruijter G., Rahardjo Y.S.P., Hoogschagen M.J., Heerikhuisen M., Levin A., Driel K.G.A., Schutyser M.A.I., Dijksterhuis J., Zhu Y., other 4 authors Aspergillus oryzae in solid-state and submerged fermentations. FEMS Yeast Res. 2002, 2:245-248.
30. Oda K., Kakizono D., Yamada O., Iefuji H., Akita O., Iwashita K. Proteomic analysis of extracellular proteins from Aspergillus oryzae grown under submerged and solid-state culture conditions. Appl. Environ. Microbiol. 2006, 72:3448-3457.
31. Wang B., Guo G., Wang C., Lin Y., Wang X., Zhao M., Guo Y., He M., Zhang Y., Pan L. Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing. Nucleic Acids Res. 2010, 38:5075-5087.
32. Latgé J.P. Tasting the fungal cell wall. Cell. Microbiol. 2010, 12:863-872.
33. Miller K., Maas N., Toczyski D. Taking it off: regulation of H3 K56 acetylation by Hst3 and Hst4. Cell Cycle 2006, 5:2561-2565.
34. Shoji J., Arioka M., Kitamoto K. Dissecting cellular components of secretory pathway in filamentous fungi: insights into their application for protein production. Biotechnol. Lett. 2008, 30:7-14.