Application of a fast sorting algorithm to the assignment of mass spectrometric cross-linking data

Proteomics

Volumn 14, Issue 17-18, 2014, Pages 1987-1989

  Petrotchenko, Evgeniy V ^a   Borchers, Christoph H ^a,b  

^a UNIVERSITY OF VICTORIA   (Canada)

^b UNIVERSITY OF VICTORIA   (Canada)

Author keywords

Bioinformatics; Crosslinking; Peptides; Protein complexes; Proteins

Indexed keywords

ALGORITHM; ARTICLE; BIOINFORMATICS; DISULFIDE BOND; ESCHERICHIA COLI; FAST SORTING ALGORITHM; HUMAN; MASS SPECTROMETRY; NONHUMAN; PROTEIN CROSS LINKING; PROTEIN DATABASE; SEQUENCE DATABASE; CHEMISTRY; PROCEDURES; PROTEOMICS;

PEPTIDE; PROTEIN;

ALGORITHMS; DATABASES, PROTEIN; MASS SPECTROMETRY; PEPTIDES; PROTEINS; PROTEOMICS;

EID: 84904309824     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201300486     Document Type: Article

References (10)

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7. Petrotchenko, E. V., Serpa, J. J., Berjanskii, M., Suriyamongkol, B. P. et al., Use of proteinase K non-specific digestion for selective and comprehensive identification of interpeptide crosslinks: application to prion proteins. Mol. Cell. Proteomics 2012, 11, M111.013524.
8. Quan, S., Wang, L., Petrotchenko, E. V., Makepeace, K. A. et al., Super Spy variants implicate flexibility in chaperone action. eLIFE 2014, 3, e01584.
9. Serpa, J. J., Petrotchenko, E. V., Wishart, D. S., Borchers, C. H., Presented at the 61st Annual Conference on Mass Spectrometry and Allied Topics, Minneapolis, MN 2013.
10. 15N DXMSMS Match program for the automated analysis of LC/ESI-MS/MS crosslinking data from experiments using 15N metabolically labeled proteins. J. Proteomics, 2014, manuscript in revision.