메뉴 건너뛰기




Volumn 22, Issue , 2014, Pages 12-17

Positive roles of compartmentalization in internal reactions

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC RNA; LIPOSOME; VIRUS DNA; VIRUS RNA;

EID: 84904248271     PISSN: 13675931     EISSN: 18790402     Source Type: Journal    
DOI: 10.1016/j.cbpa.2014.06.011     Document Type: Review
Times cited : (20)

References (46)
  • 1
    • 46849106965 scopus 로고    scopus 로고
    • Functional organisation of Escherichia coli transcriptional regulatory network
    • Martinez-Antonio A., Janga S.C., Thieffry D. Functional organisation of Escherichia coli transcriptional regulatory network. J Mol Biol 2008, 381:238-247.
    • (2008) J Mol Biol , vol.381 , pp. 238-247
    • Martinez-Antonio, A.1    Janga, S.C.2    Thieffry, D.3
  • 2
    • 33846108672 scopus 로고    scopus 로고
    • Cell-free synthetic biology: a bottom-up approach to discovery by design
    • Simpson M.L. Cell-free synthetic biology: a bottom-up approach to discovery by design. Mol Syst Biol 2006, 2:69.
    • (2006) Mol Syst Biol , vol.2 , pp. 69
    • Simpson, M.L.1
  • 3
    • 33845965687 scopus 로고    scopus 로고
    • Synthetic biology projects in vitro
    • Forster A.C., Church G.M. Synthetic biology projects in vitro. Genome Res 2007, 17:1-6.
    • (2007) Genome Res , vol.17 , pp. 1-6
    • Forster, A.C.1    Church, G.M.2
  • 5
    • 84880933924 scopus 로고    scopus 로고
    • Semi-synthetic minimal cells: origin and recent developments
    • Stano P., Luisi P.L. Semi-synthetic minimal cells: origin and recent developments. Curr Opin Biotechnol 2013, 24:633-638.
    • (2013) Curr Opin Biotechnol , vol.24 , pp. 633-638
    • Stano, P.1    Luisi, P.L.2
  • 9
    • 37349017315 scopus 로고    scopus 로고
    • Artificial cells: building bioinspired systems using small-scale biology
    • Zhang Y., Ruder W.C., LeDuc P.R. Artificial cells: building bioinspired systems using small-scale biology. Trends Biotechnol 2008, 26:14-20.
    • (2008) Trends Biotechnol , vol.26 , pp. 14-20
    • Zhang, Y.1    Ruder, W.C.2    LeDuc, P.R.3
  • 10
  • 11
    • 0028961414 scopus 로고
    • Enzymatic RNA replication in self-reproducing vesicles: an approach to a minimal cell
    • Oberholzer T., Wick R., Luisi P.L., Biebricher C.K. Enzymatic RNA replication in self-reproducing vesicles: an approach to a minimal cell. Biochem Biophys Res Commun 1995, 207:250-257.
    • (1995) Biochem Biophys Res Commun , vol.207 , pp. 250-257
    • Oberholzer, T.1    Wick, R.2    Luisi, P.L.3    Biebricher, C.K.4
  • 13
    • 0035702167 scopus 로고    scopus 로고
    • Synthesis of functional protein in liposome
    • Yu W., Sato K., Wakabayashi M., et al. Synthesis of functional protein in liposome. J Biosci Bioeng 2001, 92:590-593.
    • (2001) J Biosci Bioeng , vol.92 , pp. 590-593
    • Yu, W.1    Sato, K.2    Wakabayashi, M.3
  • 14
    • 0345306658 scopus 로고    scopus 로고
    • Gene expression within cell-sized lipid vesicles
    • Nomura S.M., Tsumoto K., Hamada T., et al. Gene expression within cell-sized lipid vesicles. Chembiochem 2003, 4:1172-1175.
    • (2003) Chembiochem , vol.4 , pp. 1172-1175
    • Nomura, S.M.1    Tsumoto, K.2    Hamada, T.3
  • 15
    • 11144220854 scopus 로고    scopus 로고
    • A vesicle bioreactor as a step toward an artificial cell assembly
    • Noireaux V., Libchaber A. A vesicle bioreactor as a step toward an artificial cell assembly. Proc Natl Acad Sci USA 2004, 101:17669-17674.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 17669-17674
    • Noireaux, V.1    Libchaber, A.2
  • 16
    • 59249084001 scopus 로고    scopus 로고
    • A synthetic biology approach to the construction of membrane proteins in semi-synthetic minimal cells
    • Kuruma Y., Stano P., Ueda T., Luisi P.L. A synthetic biology approach to the construction of membrane proteins in semi-synthetic minimal cells. Biochim Biophys Acta 2009, 1788:567-574.
    • (2009) Biochim Biophys Acta , vol.1788 , pp. 567-574
    • Kuruma, Y.1    Stano, P.2    Ueda, T.3    Luisi, P.L.4
  • 17
    • 84903137672 scopus 로고    scopus 로고
    • In vitro membrane protein synthesis inside cell-sized vesicles reveals the dependence of membrane protein integration on vesicle volume
    • Soga H., Fujii S., Yomo T., et al. In vitro membrane protein synthesis inside cell-sized vesicles reveals the dependence of membrane protein integration on vesicle volume. ACS Synth Biol 2014, 3:372-379.
    • (2014) ACS Synth Biol , vol.3 , pp. 372-379
    • Soga, H.1    Fujii, S.2    Yomo, T.3
  • 18
    • 54349108394 scopus 로고    scopus 로고
    • Replication of genetic information with self-encoded replicase in liposomes
    • Kita H., Matsuura T., Sunami T., et al. Replication of genetic information with self-encoded replicase in liposomes. Chembiochem 2008, 9:2403-2410.
    • (2008) Chembiochem , vol.9 , pp. 2403-2410
    • Kita, H.1    Matsuura, T.2    Sunami, T.3
  • 19
    • 59649092601 scopus 로고    scopus 로고
    • Importance of translation-replication balance for efficient replication by the self-encoded replicase
    • Ichihashi N., Matsuura T., Kita H., et al. Importance of translation-replication balance for efficient replication by the self-encoded replicase. Chembiochem 2008, 9:3023-3028.
    • (2008) Chembiochem , vol.9 , pp. 3023-3028
    • Ichihashi, N.1    Matsuura, T.2    Kita, H.3
  • 20
    • 80052950343 scopus 로고    scopus 로고
    • Cell-like systems with riboswitch controlled gene expression
    • Martini L., Mansy S.S. Cell-like systems with riboswitch controlled gene expression. Chem Commun (Camb) 2011, 47:10734-10736.
    • (2011) Chem Commun (Camb) , vol.47 , pp. 10734-10736
    • Martini, L.1    Mansy, S.S.2
  • 21
    • 84877775888 scopus 로고    scopus 로고
    • A controllable gene expression system in liposomes that includes a positive feedback loop
    • Kobori S., Ichihashi N., Kazuta Y., Yomo T. A controllable gene expression system in liposomes that includes a positive feedback loop. Mol Biosyst 2013, 9:1282-1285.
    • (2013) Mol Biosyst , vol.9 , pp. 1282-1285
    • Kobori, S.1    Ichihashi, N.2    Kazuta, Y.3    Yomo, T.4
  • 22
    • 37549063632 scopus 로고    scopus 로고
    • Lecithin-based water-in-oil compartments as dividing bioreactors
    • Fiordemondo D., Stano P. Lecithin-based water-in-oil compartments as dividing bioreactors. Chembiochem 2007, 8:1965-1973.
    • (2007) Chembiochem , vol.8 , pp. 1965-1973
    • Fiordemondo, D.1    Stano, P.2
  • 23
    • 0031854986 scopus 로고    scopus 로고
    • Man-made cell-like compartments for molecular evolution
    • Tawfik D.S., Griffiths A.D. Man-made cell-like compartments for molecular evolution. Nat Biotechnol 1998, 16:652-656.
    • (1998) Nat Biotechnol , vol.16 , pp. 652-656
    • Tawfik, D.S.1    Griffiths, A.D.2
  • 24
    • 0035836707 scopus 로고    scopus 로고
    • Directed evolution of polymerase function by compartmentalized self-replication
    • Ghadessy F.J., Ong J.L., Holliger P. Directed evolution of polymerase function by compartmentalized self-replication. Proc Natl Acad Sci USA 2001, 98:4552-4557.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 4552-4557
    • Ghadessy, F.J.1    Ong, J.L.2    Holliger, P.3
  • 25
    • 0037464428 scopus 로고    scopus 로고
    • Single-molecule PCR using water-in-oil emulsion
    • Nakano M., Komatsu J., Matsuura S., et al. Single-molecule PCR using water-in-oil emulsion. J Biotechnol 2003, 102:117-124.
    • (2003) J Biotechnol , vol.102 , pp. 117-124
    • Nakano, M.1    Komatsu, J.2    Matsuura, S.3
  • 27
    • 84885092862 scopus 로고    scopus 로고
    • Darwinian evolution in a translation-coupled RNA replication system within a cell-like compartment
    • Ichihashi N., Usui K., Kazuta Y., et al. Darwinian evolution in a translation-coupled RNA replication system within a cell-like compartment. Nat Commun 2013, 4:2494.
    • (2013) Nat Commun , vol.4 , pp. 2494
    • Ichihashi, N.1    Usui, K.2    Kazuta, Y.3
  • 28
    • 65549091378 scopus 로고    scopus 로고
    • The minimal size of liposome-based model cells brings about a remarkably enhanced entrapment and protein synthesis
    • Pereira de Souza T., Stano P., Luisi P.L. The minimal size of liposome-based model cells brings about a remarkably enhanced entrapment and protein synthesis. Chembiochem 2009, 10:1056-1063.
    • (2009) Chembiochem , vol.10 , pp. 1056-1063
    • Pereira de Souza, T.1    Stano, P.2    Luisi, P.L.3
  • 29
    • 84868223498 scopus 로고    scopus 로고
    • Effects of compartment size on the kinetics of intracompartmental multimeric protein synthesis
    • Matsuura T., Hosoda K., Kazuta Y., et al. Effects of compartment size on the kinetics of intracompartmental multimeric protein synthesis. ACS Synth Biol 2012, 1:431-437.
    • (2012) ACS Synth Biol , vol.1 , pp. 431-437
    • Matsuura, T.1    Hosoda, K.2    Kazuta, Y.3
  • 30
    • 84859740853 scopus 로고    scopus 로고
    • Cell-Sized confinement in microspheres accelerates the reaction of gene expression
    • Kato A., Yanagisawa M., Sato Y.T., et al. Cell-Sized confinement in microspheres accelerates the reaction of gene expression. Sci Rep 2012, 2:283.
    • (2012) Sci Rep , vol.2 , pp. 283
    • Kato, A.1    Yanagisawa, M.2    Sato, Y.T.3
  • 31
    • 77749289998 scopus 로고    scopus 로고
    • Compartmentalization in a water-in-oil emulsion repressed the spontaneous amplification of RNA by Q beta replicase
    • Urabe H., Ichihashi N., Matsuura T., et al. Compartmentalization in a water-in-oil emulsion repressed the spontaneous amplification of RNA by Q beta replicase. Biochemistry 2010, 49:1809-1813.
    • (2010) Biochemistry , vol.49 , pp. 1809-1813
    • Urabe, H.1    Ichihashi, N.2    Matsuura, T.3
  • 32
    • 84860168280 scopus 로고    scopus 로고
    • Importance of parasite RNA species repression for prolonged translation-coupled RNA self-replication
    • Bansho Y., Ichihashi N., Kazuta Y., et al. Importance of parasite RNA species repression for prolonged translation-coupled RNA self-replication. Chem Biol 2012, 19:478-487.
    • (2012) Chem Biol , vol.19 , pp. 478-487
    • Bansho, Y.1    Ichihashi, N.2    Kazuta, Y.3
  • 33
    • 0026338012 scopus 로고
    • The hypercycle. Coupling of RNA and protein biosynthesis in the infection cycle of an RNA bacteriophage
    • Eigen M., Biebricher C.K., Gebinoga M., Gardiner W.C. The hypercycle. Coupling of RNA and protein biosynthesis in the infection cycle of an RNA bacteriophage. Biochemistry 1991, 30:11005-11018.
    • (1991) Biochemistry , vol.30 , pp. 11005-11018
    • Eigen, M.1    Biebricher, C.K.2    Gebinoga, M.3    Gardiner, W.C.4
  • 34
  • 35
    • 79953652239 scopus 로고    scopus 로고
    • On the origin of DNA genomes: evolution of the division of labor between template and catalyst in model replicator systems
    • Takeuchi N., Hogeweg P., Koonin E.V. On the origin of DNA genomes: evolution of the division of labor between template and catalyst in model replicator systems. PLoS Comput Biol 2011, 7:e1002024.
    • (2011) PLoS Comput Biol , vol.7
    • Takeuchi, N.1    Hogeweg, P.2    Koonin, E.V.3
  • 36
    • 84885395990 scopus 로고    scopus 로고
    • A remarkable self-organization process as the origin of primitive functional cells
    • Stano P., D'Aguanno E., Bolz J., et al. A remarkable self-organization process as the origin of primitive functional cells. Angew Chem Int Ed Engl 2013, 52:13397-13400.
    • (2013) Angew Chem Int Ed Engl , vol.52 , pp. 13397-13400
    • Stano, P.1    D'Aguanno, E.2    Bolz, J.3
  • 37
    • 77957197223 scopus 로고    scopus 로고
    • Spontaneous protein crowding in liposomes: a new vista for the origin of cellular metabolism
    • Luisi P.L., Allegretti M., Pereira de Souza T., et al. Spontaneous protein crowding in liposomes: a new vista for the origin of cellular metabolism. Chembiochem 2010, 11:1989-1992.
    • (2010) Chembiochem , vol.11 , pp. 1989-1992
    • Luisi, P.L.1    Allegretti, M.2    Pereira de Souza, T.3
  • 38
    • 84903161323 scopus 로고    scopus 로고
    • Cell-free protein synthesis in a microchamber revealed the presence of an optimum compartment volume for high-order reactions
    • Okano T., Matsuura T., Suzuki H., Yomo T. Cell-free protein synthesis in a microchamber revealed the presence of an optimum compartment volume for high-order reactions. ACS Synth Biol 2014, 3:347-352.
    • (2014) ACS Synth Biol , vol.3 , pp. 347-352
    • Okano, T.1    Matsuura, T.2    Suzuki, H.3    Yomo, T.4
  • 39
    • 67749089288 scopus 로고    scopus 로고
    • Coupled growth and division of model protocell membranes
    • Zhu T.F., Szostak J.W. Coupled growth and division of model protocell membranes. J Am Chem Soc 2009, 131:5705-5713.
    • (2009) J Am Chem Soc , vol.131 , pp. 5705-5713
    • Zhu, T.F.1    Szostak, J.W.2
  • 40
    • 80053292274 scopus 로고    scopus 로고
    • Self-reproduction of supramolecular giant vesicles combined with the amplification of encapsulated DNA
    • Kurihara K., Tamura M., Shohda K., et al. Self-reproduction of supramolecular giant vesicles combined with the amplification of encapsulated DNA. Nat Chem 2011, 3:775-781.
    • (2011) Nat Chem , vol.3 , pp. 775-781
    • Kurihara, K.1    Tamura, M.2    Shohda, K.3
  • 41
    • 81755185882 scopus 로고    scopus 로고
    • In vitro reconstitution and steady-state analysis of the fatty acid synthase from Escherichia coli
    • Yu X., Liu T., Zhu F., Khosla C. In vitro reconstitution and steady-state analysis of the fatty acid synthase from Escherichia coli. Proc Natl Acad Sci USA 2011, 108:18643-18648.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 18643-18648
    • Yu, X.1    Liu, T.2    Zhu, F.3    Khosla, C.4
  • 42
    • 44049091371 scopus 로고    scopus 로고
    • Reconstitution of contractile FtsZ rings in liposomes
    • Osawa M., Anderson D.E., Erickson H.P. Reconstitution of contractile FtsZ rings in liposomes. Science 2008, 320:792-794.
    • (2008) Science , vol.320 , pp. 792-794
    • Osawa, M.1    Anderson, D.E.2    Erickson, H.P.3
  • 43
    • 0015133749 scopus 로고
    • Selforganization of matter and the evolution of biological macromolecules
    • Eigen M. Selforganization of matter and the evolution of biological macromolecules. Naturwissenschaften 1971, 58:465-523.
    • (1971) Naturwissenschaften , vol.58 , pp. 465-523
    • Eigen, M.1
  • 44
    • 0023661947 scopus 로고
    • Group selection of early replicators and the origin of life
    • Szathmary E., Demeter L. Group selection of early replicators and the origin of life. J Theor Biol 1987, 128:463-486.
    • (1987) J Theor Biol , vol.128 , pp. 463-486
    • Szathmary, E.1    Demeter, L.2
  • 45
    • 78650817268 scopus 로고    scopus 로고
    • Reproduction of a protocell by replication of a minority molecule in a catalytic reaction network
    • Kamimura A., Kaneko K. Reproduction of a protocell by replication of a minority molecule in a catalytic reaction network. Phys Rev Lett 2010, 105.
    • (2010) Phys Rev Lett , vol.105
    • Kamimura, A.1    Kaneko, K.2
  • 46
    • 77949843031 scopus 로고    scopus 로고
    • Kinetic models for autopoietic chemical systems: the role of fluctuations in a homeostatic regime
    • Mavelli F., Stano P. Kinetic models for autopoietic chemical systems: the role of fluctuations in a homeostatic regime. Phys Biol 2010, 7:16010.
    • (2010) Phys Biol , vol.7 , pp. 16010
    • Mavelli, F.1    Stano, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.