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Volumn 28, Issue 12, 2014, Pages 1719-1728

Genome-wide analysis of histone modifications in latently HIV-1 infected T cells

Author keywords

chromatin; epigenetics; epigenome; histone modifications; HIV type 1; network analysis; viral latency

Indexed keywords

CYCLIN D2; CYCLIN DEPENDENT KINASE INHIBITOR 1A; HISTONE; HISTONES;

EID: 84904203975     PISSN: 02699370     EISSN: 14735571     Source Type: Journal    
DOI: 10.1097/QAD.0000000000000309     Document Type: Article
Times cited : (23)

References (31)
  • 2
    • 3543008920 scopus 로고    scopus 로고
    • High-resolution genome-wide mapping of histone modifications
    • Roh TY, Ngau WC, Cui K, Landsman D, Zhao K. High-resolution genome-wide mapping of histone modifications. Nat Biotechnol 2004 221013-1016.
    • (2004) Nat Biotechnol , vol.22 , pp. 1013-1016
    • Roh, T.Y.1    Ngau, W.C.2    Cui, K.3    Landsman, D.4    Zhao, K.5
  • 3
    • 14644406272 scopus 로고    scopus 로고
    • Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping
    • Roh TY, Cuddapah S, Zhao K. Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping. Genes Dev 2005 19542-552.
    • (2005) Genes Dev , vol.19 , pp. 542-552
    • Roh, T.Y.1    Cuddapah, S.2    Zhao, K.3
  • 4
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • Barski A, Cuddapah S, Cui KR, Roh TY, Schones DE, Wang ZB, et al. High-resolution profiling of histone methylations in the human genome. Cell 2007 129823-837.
    • (2007) Cell , vol.129 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.R.3    Roh, T.Y.4    Schones, D.E.5    Wang, Z.B.6
  • 5
    • 39749145198 scopus 로고    scopus 로고
    • Dynamic regulation of nucleosome positioning in the human genome
    • Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, et al. Dynamic regulation of nucleosome positioning in the human genome. Cell 2008 132887-898.
    • (2008) Cell , vol.132 , pp. 887-898
    • Schones, D.E.1    Cui, K.2    Cuddapah, S.3    Roh, T.Y.4    Barski, A.5    Wang, Z.6
  • 6
    • 84863986133 scopus 로고    scopus 로고
    • Functions of DNA methylation islands, start sites, gene bodies and beyond
    • Jones PA. Functions of DNA methylation islands, start sites, gene bodies and beyond. Nat Rev Genet 2012 13484-492.
    • (2012) Nat Rev Genet , vol.13 , pp. 484-492
    • Jones, P.A.1
  • 7
    • 84886743766 scopus 로고    scopus 로고
    • ENCODE a sourcebook of epigenomes and chromatin language
    • Yavartanoo M, Choi JK. ENCODE a sourcebook of epigenomes and chromatin language. Genomics Inform 2013 11 2-6.
    • (2013) Genomics Inform , vol.11 , pp. 2-6
    • Yavartanoo, M.1    Choi, J.K.2
  • 8
    • 84885470947 scopus 로고    scopus 로고
    • Characterization of chromatin structure-associated histone modifications in breast cancer cells
    • Hong CP, Choe MK, Roh TY. Characterization of chromatin structure-associated histone modifications in breast cancer cells. Genomics Inform 2012 10145-152.
    • (2012) Genomics Inform , vol.10 , pp. 145-152
    • Hong, C.P.1    Choe, M.K.2    Roh, T.Y.3
  • 9
    • 84870375316 scopus 로고    scopus 로고
    • Histone lysine methylation dynamics establishment, regulation, and biological impact
    • Black JC, Van Rechem C, Whetstine JR. Histone lysine methylation dynamics establishment, regulation, and biological impact. Molecular Cell 2012 48491-507.
    • (2012) Molecular Cell , vol.48 , pp. 491-507
    • Black, J.C.1    Van Rechem, C.2    Whetstine, J.R.3
  • 10
    • 66449113383 scopus 로고    scopus 로고
    • Histone acetylation where to go and how to get there
    • MacDonald VE, Howe LJ. Histone acetylation where to go and how to get there. Epigenetics 2009 4139-143.
    • (2009) Epigenetics , vol.4 , pp. 139-143
    • MacDonald, V.E.1    Howe, L.J.2
  • 11
    • 84886676923 scopus 로고    scopus 로고
    • Epigenetics of HIV infection promising research areas and implications for therapy
    • Ay E, Banati F, Mezei M, Bakos A, Niller HH, Buzas K, et al. Epigenetics of HIV infection promising research areas and implications for therapy. AIDS Rev 2013 15181-188.
    • (2013) AIDS Rev , vol.15 , pp. 181-188
    • Ay, E.1    Banati, F.2    Mezei, M.3    Bakos, A.4    Niller, H.H.5    Buzas, K.6
  • 12
    • 33644507479 scopus 로고    scopus 로고
    • Transcription factor YY1 structure, function, and therapeutic implications in cancer biology
    • Gordon S, Akopyan G, Garban H, Bonavida B. Transcription factor YY1 structure, function, and therapeutic implications in cancer biology. Oncogene 2006 251125-1142.
    • (2006) Oncogene , vol.25 , pp. 1125-1142
    • Gordon, S.1    Akopyan, G.2    Garban, H.3    Bonavida, B.4
  • 13
    • 4944266947 scopus 로고    scopus 로고
    • Polyamides reveal a role for repression in latency within resting T cells of HIV-infected donors
    • Ylisastigui L, Coull JJ, Rucker VC, Melander C, Bosch RJ, Brodie SJ, et al. Polyamides reveal a role for repression in latency within resting T cells of HIV-infected donors. J Infect Dis 2004 1901429-1437.
    • (2004) J Infect Dis , vol.190 , pp. 1429-1437
    • Ylisastigui, L.1    Coull, J.J.2    Rucker, V.C.3    Melander, C.4    Bosch, R.J.5    Brodie, S.J.6
  • 14
    • 30444431914 scopus 로고    scopus 로고
    • NF-kappaB p50 promotes HIV latency through HDAC recruitment and repression of transcriptional initiation
    • Williams SA, Chen LF, Kwon H, Ruiz-Jarabo CM, Verdin E, Greene WC. NF-kappaB p50 promotes HIV latency through HDAC recruitment and repression of transcriptional initiation. EMBO J 2006 25139-149.
    • (2006) EMBO J , vol.25 , pp. 139-149
    • Williams, S.A.1    Chen, L.F.2    Kwon, H.3    Ruiz-Jarabo, C.M.4    Verdin, E.5    Greene, W.C.6
  • 15
    • 35148858784 scopus 로고    scopus 로고
    • C-Myc and Sp1 contribute to proviral latency by recruiting histone deacetylase 1 to the human immunodeficiency virus type 1 promoter
    • Jiang G, Espeseth A, Hazuda DJ, Margolis DM. c-Myc and Sp1 contribute to proviral latency by recruiting histone deacetylase 1 to the human immunodeficiency virus type 1 promoter. J Virol 2007 8110914-10923.
    • (2007) J Virol , vol.81 , pp. 10914-10923
    • Jiang, G.1    Espeseth, A.2    Hazuda, D.J.3    Margolis, D.M.4
  • 16
    • 84857948627 scopus 로고    scopus 로고
    • The viral protein Tat can inhibit the establishment of HIV-1 latency
    • Donahue DA, Kuhl BD, Sloan RD, Wainberg MA. The viral protein Tat can inhibit the establishment of HIV-1 latency. J Virol 2012 863253-3263.
    • (2012) J Virol , vol.86 , pp. 3253-3263
    • Donahue, D.A.1    Kuhl, B.D.2    Sloan, R.D.3    Wainberg, M.A.4
  • 17
    • 33750488431 scopus 로고    scopus 로고
    • The genomic landscape of histone modifications in human T cells
    • Roh TY, Cuddapah S, Cui K, Zhao K. The genomic landscape of histone modifications in human T cells. Proc Natl Acad Sci USA 2006 10315782-15787.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 15782-15787
    • Roh, T.Y.1    Cuddapah, S.2    Cui, K.3    Zhao, K.4
  • 18
    • 33846006550 scopus 로고    scopus 로고
    • Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns
    • Roh TY, Wei G, Farrell CM, Zhao K. Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns. Genome Res 2007 1774-81.
    • (2007) Genome Res , vol.17 , pp. 74-81
    • Roh, T.Y.1    Wei, G.2    Farrell, C.M.3    Zhao, K.4
  • 20
    • 78651360646 scopus 로고    scopus 로고
    • The effect of CD4 receptor downregulation and its downstream signaling molecules on HIV-1 latency
    • Kim KC, Kim HG, Roh TY, Park J, Jung KM, Lee JS, et al. The effect of CD4 receptor downregulation and its downstream signaling molecules on HIV-1 latency. Biochem Biophys Res Commun 2011 404646-651.
    • (2011) Biochem Biophys Res Commun , vol.404 , pp. 646-651
    • Kim, K.C.1    Kim, H.G.2    Roh, T.Y.3    Park, J.4    Jung, K.M.5    Lee, J.S.6
  • 21
    • 84862828921 scopus 로고    scopus 로고
    • Functional elements demarcated by histone modifications in breast cancer cells
    • Choe MK, Hong CP, Park J, Seo SH, Roh TY. Functional elements demarcated by histone modifications in breast cancer cells. Biochem Biophys Res Commun 2012 418475-482.
    • (2012) Biochem Biophys Res Commun , vol.418 , pp. 475-482
    • Choe, M.K.1    Hong, C.P.2    Park, J.3    Seo, S.H.4    Roh, T.Y.5
  • 22
    • 67650711619 scopus 로고    scopus 로고
    • A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
    • Zang C, Schones DE, Zeng C, Cui K, Zhao K, Peng W. A clustering approach for identification of enriched domains from histone modification ChIP-Seq data. Bioinformatics 2009 251952-1958.
    • (2009) Bioinformatics , vol.25 , pp. 1952-1958
    • Zang, C.1    Schones, D.E.2    Zeng, C.3    Cui, K.4    Zhao, K.5    Peng, W.6
  • 23
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • Bader GD, Hogue CW. An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 2003 42.
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.D.1    Hogue, C.W.2
  • 24
    • 24044440971 scopus 로고    scopus 로고
    • BiNGO a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
    • Maere S, Heymans K, Kuiper M. BiNGO a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 2005 213448-3449.
    • (2005) Bioinformatics , vol.21 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3
  • 25
    • 80052793248 scopus 로고    scopus 로고
    • Establishment of novel cell lines latently infected with human immunodeficiency virus 1
    • Oh YT, Kim KC, Hong KJ, Lee HS, Jang DH, Lee JS, et al. Establishment of novel cell lines latently infected with human immunodeficiency virus 1. Acta Virol 2011 55155-159.
    • (2011) Acta Virol , vol.55 , pp. 155-159
    • Oh, Y.T.1    Kim, K.C.2    Hong, K.J.3    Lee, H.S.4    Jang, D.H.5    Lee, J.S.6
  • 26
    • 68649099762 scopus 로고    scopus 로고
    • HIV integration site distributions in resting and activated CD4R T cells infected in culture
    • Brady T, Agosto LM, Malani N, Berry CC, O'Doherty U, Bushman F. HIV integration site distributions in resting and activated CD4R T cells infected in culture. AIDS 2009 231461-1471.
    • (2009) AIDS , vol.23 , pp. 1461-1471
    • Brady, T.1    Agosto, L.M.2    Malani, N.3    Berry, C.C.4    O'Doherty, U.5    Bushman, F.6
  • 27
    • 34547635063 scopus 로고    scopus 로고
    • HIV integration site selection analysis by massively parallel pyrosequencing reveals association with epigenetic modifications
    • Wang GP, Ciuffi A, Leipzig J, Berry CC, Bushman FD. HIV integration site selection analysis by massively parallel pyrosequencing reveals association with epigenetic modifications. Genome Res 2007 171186-1194.
    • (2007) Genome Res , vol.17 , pp. 1186-1194
    • Wang, G.P.1    Ciuffi, A.2    Leipzig, J.3    Berry, C.C.4    Bushman, F.D.5
  • 30
    • 77957730576 scopus 로고    scopus 로고
    • Cell line-dependent variability in HIV activation employing DNMT inhibitors
    • Fernandez G, Zeichner SL. Cell line-dependent variability in HIV activation employing DNMT inhibitors. Virol J 2010 7266.
    • (2010) Virol J , vol.7 , pp. 266
    • Fernandez, G.1    Zeichner, S.L.2
  • 31
    • 70350148394 scopus 로고    scopus 로고
    • Understanding HIV-1 latency provides clues for the eradication of long-term reservoirs
    • Coiras M, Lopez-Huertas MR, Perez-Olmeda M, Alcami J. Understanding HIV-1 latency provides clues for the eradication of long-term reservoirs. Nat Rev Microbiol 2009 7798-812. Institute of Health
    • (2009) Nat Rev Microbiol , vol.7 , pp. 798-812
    • Coiras, M.1    Lopez-Huertas, M.R.2    Perez-Olmeda, M.3    Alcami, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.